Atom Nomenclature for 9Z8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9Z8

Atom Name (V3) Atom Name (V2)
O01 O01
C02 C02
C03 C03
S04 S04
N05 N05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
C11 C11
O12 O12
N13 N13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
H031 H031
H032 H032
H05 H05
H061 H061
H062 H062
H071 H071
H072 H072
H081 H081
H082 H082
H091 H091
H092 H092
H101 H101
H102 H102
H13 H13
H15 H15
H19 H19
H16 H16
H17 H17
H18 H18
H32 H32