PDB Chemical Component 9Z6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9Z6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O09 |
P06 |
1.474 |
1.480 |
| O07 |
P06 |
1.461 |
1.610 |
| P06 |
O08 |
1.637 |
1.610 |
| P06 |
O05 |
1.630 |
1.610 |
| C04 |
O05 |
1.396 |
1.429 |
| C04 |
C02 |
1.529 |
1.530 |
| C10 |
O32 |
1.407 |
1.429 |
| C10 |
C02 |
1.527 |
1.530 |
| C10 |
C11 |
1.524 |
1.507 |
| O31 |
C29 |
1.258 |
1.208 |
| N13 |
C11 |
1.438 |
1.348 |
| N13 |
C14 |
1.440 |
1.464 |
| C01 |
C02 |
1.557 |
1.530 |
| S24 |
S25 |
2.099 |
2.050 |
| S24 |
C23 |
1.812 |
1.814 |
| S25 |
C26 |
1.826 |
1.815 |
| C02 |
C03 |
1.543 |
1.530 |
| C11 |
O12 |
1.193 |
1.212 |
| C14 |
C15 |
1.517 |
1.530 |
| C29 |
O30 |
1.259 |
1.343 |
| C29 |
C27 |
1.534 |
1.507 |
| C15 |
C16 |
1.526 |
1.507 |
| C23 |
C19 |
1.532 |
1.531 |
| C16 |
N18 |
1.455 |
1.348 |
| C16 |
O17 |
1.184 |
1.213 |
| C26 |
C27 |
1.523 |
1.529 |
| N18 |
C19 |
1.454 |
1.465 |
| C27 |
N28 |
1.452 |
1.469 |
| C19 |
C20 |
1.540 |
1.506 |
| C20 |
O21 |
1.263 |
1.209 |
| C20 |
O22 |
1.262 |
1.342 |
| C01 |
H1 |
1.100 |
1.090 |
| C01 |
H2 |
1.100 |
1.090 |
| C01 |
H3 |
1.100 |
1.089 |
| C03 |
H4 |
1.100 |
1.090 |
| C03 |
H5 |
1.100 |
1.091 |
| C03 |
H6 |
1.100 |
1.090 |
| C04 |
H7 |
1.100 |
1.090 |
| C04 |
H8 |
1.101 |
1.091 |
| O07 |
H9 |
0.950 |
0.967 |
| O08 |
H10 |
0.950 |
0.966 |
| C10 |
H11 |
1.099 |
1.091 |
| N13 |
H12 |
1.000 |
0.970 |
| C14 |
H13 |
1.100 |
1.090 |
| C14 |
H14 |
1.100 |
1.090 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H16 |
1.100 |
1.090 |
| N18 |
H17 |
1.000 |
0.970 |
| C19 |
H18 |
1.100 |
1.090 |
| O22 |
H19 |
0.950 |
0.967 |
| C23 |
H20 |
1.100 |
1.090 |
| C23 |
H21 |
1.100 |
1.089 |
| C26 |
H22 |
1.100 |
1.090 |
| C26 |
H23 |
1.100 |
1.090 |
| C27 |
H24 |
1.100 |
1.089 |
| N28 |
H25 |
1.000 |
1.009 |
| N28 |
H26 |
1.001 |
1.008 |
| O30 |
H28 |
0.950 |
0.967 |
| O32 |
H29 |
0.950 |
0.968 |
Bond Angles for 9Z6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O09 |
P06 |
O08 |
111.6 |
109.5 |
| O09 |
P06 |
O05 |
110.9 |
109.5 |
| O07 |
P06 |
O08 |
113.3 |
109.5 |
| O05 |
P06 |
O08 |
107.6 |
109.4 |
| P06 |
O08 |
H10 |
109.5 |
114.1 |
| C04 |
O05 |
P06 |
114.7 |
123.0 |
| O05 |
C04 |
H7 |
109.5 |
109.5 |
| O05 |
C04 |
H8 |
109.6 |
109.4 |
| C04 |
C02 |
C03 |
108.8 |
109.4 |
| O32 |
C10 |
C02 |
112.7 |
109.5 |
| O32 |
C10 |
H11 |
109.3 |
109.4 |
| C10 |
O32 |
H29 |
109.5 |
113.9 |
| C10 |
C02 |
C03 |
110.1 |
109.5 |
| C02 |
C10 |
H11 |
107.7 |
109.4 |
| O31 |
C29 |
O30 |
132.5 |
120.0 |
| N13 |
C14 |
C15 |
110.5 |
109.5 |
| C14 |
N13 |
H12 |
119.7 |
120.0 |
| N13 |
C14 |
H13 |
109.2 |
109.5 |
| N13 |
C14 |
H14 |
109.2 |
109.5 |
| C01 |
C02 |
C03 |
111.7 |
109.5 |
| S24 |
S25 |
C26 |
114.3 |
103.0 |
| S24 |
C23 |
H20 |
108.9 |
109.5 |
| S24 |
C23 |
H21 |
108.9 |
109.5 |
| S25 |
C26 |
H22 |
108.5 |
109.4 |
| S25 |
C26 |
H23 |
108.5 |
109.4 |
| C02 |
C03 |
H4 |
109.5 |
109.5 |
| C02 |
C03 |
H5 |
109.5 |
109.5 |
| C02 |
C03 |
H6 |
109.4 |
109.4 |
| C14 |
C15 |
C16 |
114.9 |
109.5 |
| C15 |
C14 |
H13 |
109.2 |
109.5 |
| C15 |
C14 |
H14 |
109.2 |
109.5 |
| C14 |
C15 |
H15 |
108.1 |
109.4 |
| C14 |
C15 |
H16 |
108.1 |
109.4 |
| C29 |
O30 |
H28 |
109.5 |
117.0 |
| C29 |
C27 |
H24 |
108.6 |
109.5 |
| C15 |
C16 |
N18 |
117.8 |
120.0 |
| C15 |
C16 |
O17 |
120.4 |
120.0 |
| C16 |
C15 |
H15 |
108.1 |
109.5 |
| C16 |
C15 |
H16 |
108.1 |
109.5 |
| C23 |
C19 |
H18 |
109.1 |
109.5 |
| O17 |
C16 |
N18 |
121.8 |
120.0 |
| C16 |
N18 |
C19 |
124.3 |
120.0 |
| C16 |
N18 |
H17 |
117.9 |
120.0 |
| C26 |
C27 |
H24 |
108.8 |
109.5 |
| N18 |
C19 |
C20 |
111.7 |
109.5 |
| C19 |
N18 |
H17 |
117.8 |
120.0 |
| N18 |
C19 |
H18 |
110.2 |
109.4 |
| C27 |
N28 |
H25 |
109.5 |
111.0 |
| C27 |
N28 |
H26 |
109.5 |
111.1 |
| C19 |
C20 |
O21 |
122.1 |
120.0 |
| C19 |
C20 |
O22 |
123.2 |
120.0 |
| C20 |
C19 |
H18 |
109.0 |
109.5 |
| O21 |
C20 |
O22 |
114.7 |
120.0 |
| C20 |
O22 |
H19 |
109.5 |
117.0 |
| H1 |
C01 |
H2 |
109.4 |
109.5 |
| H1 |
C01 |
H3 |
109.5 |
109.5 |
| H2 |
C01 |
H3 |
109.5 |
109.6 |
| H4 |
C03 |
H5 |
109.5 |
109.4 |
| H4 |
C03 |
H6 |
109.5 |
109.5 |
| H5 |
C03 |
H6 |
109.5 |
109.5 |
| H7 |
C04 |
H8 |
109.5 |
109.5 |
| H14 |
C14 |
H13 |
109.4 |
109.4 |
| H15 |
C15 |
H16 |
109.5 |
109.5 |
| H20 |
C23 |
H21 |
109.4 |
109.5 |
| H22 |
C26 |
H23 |
109.5 |
109.5 |
| H25 |
N28 |
H26 |
109.5 |
111.0 |
Torsion Angles for 9Z6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O07 |
P06 |
O09 |
O08 |
237.3 |
240.0 |
| O05 |
P06 |
O09 |
O08 |
120.0 |
120.0 |
| O09 |
P06 |
O08 |
H10 |
360.0 |
180.0 |
| C04 |
O05 |
P06 |
O09 |
68.4 |
305.0 |
| O09 |
P06 |
O07 |
O08 |
121.6 |
120.0 |
| O05 |
P06 |
O07 |
O08 |
240.1 |
240.0 |
| O07 |
P06 |
O08 |
H10 |
117.3 |
300.0 |
| O09 |
P06 |
O08 |
O05 |
121.9 |
120.0 |
| C04 |
O05 |
P06 |
O08 |
190.7 |
65.1 |
| O09 |
P06 |
O05 |
O08 |
237.7 |
240.0 |
| O07 |
P06 |
O05 |
O08 |
123.4 |
120.0 |
| O05 |
P06 |
O08 |
H10 |
238.1 |
60.0 |
| P06 |
O05 |
C04 |
H7 |
322.9 |
60.0 |
| P06 |
O05 |
C04 |
H8 |
83.0 |
300.0 |
| O09 |
P06 |
O05 |
C04 |
68.4 |
305.0 |
| O05 |
C04 |
C02 |
C03 |
298.3 |
300.0 |
| H7 |
C04 |
O05 |
H8 |
239.9 |
120.0 |
| C10 |
C02 |
C04 |
C03 |
241.8 |
240.0 |
| C04 |
C02 |
C10 |
H11 |
300.0 |
174.3 |
| C01 |
C02 |
C04 |
C03 |
121.5 |
120.0 |
| C04 |
C02 |
C03 |
H4 |
180.0 |
306.4 |
| C04 |
C02 |
C03 |
H5 |
300.0 |
66.4 |
| C04 |
C02 |
C03 |
H6 |
60.0 |
186.4 |
| O32 |
C10 |
C02 |
C03 |
303.3 |
174.3 |
| C02 |
C10 |
O32 |
H11 |
240.3 |
240.1 |
| C04 |
C02 |
C10 |
C03 |
117.4 |
119.9 |
| O32 |
C10 |
C02 |
H11 |
120.7 |
119.9 |
| C02 |
C10 |
O32 |
H29 |
107.2 |
60.1 |
| C01 |
C02 |
C10 |
C03 |
234.9 |
239.9 |
| C10 |
C02 |
C03 |
H4 |
295.5 |
66.4 |
| C10 |
C02 |
C03 |
H5 |
55.5 |
186.4 |
| C10 |
C02 |
C03 |
H6 |
175.5 |
306.3 |
| O31 |
C29 |
O30 |
H28 |
0.0 |
0.0 |
| O31 |
C29 |
C27 |
H24 |
29.1 |
220.0 |
| N13 |
C14 |
C15 |
C16 |
156.8 |
180.0 |
| C15 |
C14 |
N13 |
H13 |
239.8 |
120.0 |
| C15 |
C14 |
N13 |
H14 |
120.2 |
240.0 |
| N13 |
C14 |
C15 |
H15 |
277.6 |
300.0 |
| N13 |
C14 |
C15 |
H16 |
36.0 |
60.0 |
| H14 |
C14 |
N13 |
H13 |
119.7 |
240.0 |
| C04 |
C02 |
C01 |
C03 |
240.3 |
240.0 |
| C10 |
C02 |
C01 |
C03 |
124.2 |
120.0 |
| C01 |
C02 |
C10 |
H11 |
57.6 |
294.3 |
| C01 |
C02 |
C03 |
H4 |
60.8 |
186.5 |
| C01 |
C02 |
C03 |
H5 |
180.9 |
306.4 |
| C01 |
C02 |
C03 |
H6 |
300.8 |
66.4 |
| S25 |
S24 |
C23 |
H20 |
1.0 |
310.0 |
| S25 |
S24 |
C23 |
H21 |
120.2 |
190.0 |
| S24 |
S25 |
C26 |
H22 |
239.3 |
310.0 |
| S24 |
S25 |
C26 |
H23 |
358.2 |
190.0 |
| S24 |
C23 |
C19 |
H18 |
24.9 |
60.0 |
| H20 |
C23 |
S24 |
H21 |
240.8 |
120.0 |
| S25 |
C26 |
C27 |
H24 |
292.8 |
60.0 |
| H22 |
C26 |
S25 |
H23 |
241.1 |
120.0 |
| C03 |
C02 |
C10 |
H11 |
182.6 |
54.4 |
| H4 |
C03 |
C02 |
H5 |
240.0 |
240.0 |
| H4 |
C03 |
C02 |
H6 |
120.0 |
120.0 |
| H5 |
C03 |
C02 |
H6 |
240.0 |
240.0 |
| C15 |
C14 |
N13 |
H12 |
274.4 |
0.0 |
| N13 |
C14 |
C15 |
H13 |
120.2 |
240.0 |
| N13 |
C14 |
C15 |
H14 |
239.8 |
120.0 |
| C14 |
C15 |
C16 |
N18 |
27.6 |
180.0 |
| C14 |
C15 |
C16 |
O17 |
206.2 |
360.0 |
| C16 |
C15 |
C14 |
H15 |
239.2 |
240.0 |
| C16 |
C15 |
C14 |
H16 |
120.8 |
120.0 |
| H14 |
C14 |
C15 |
H13 |
240.3 |
120.0 |
| H15 |
C15 |
C14 |
H16 |
241.6 |
240.0 |
| O30 |
C29 |
C27 |
H24 |
208.7 |
40.1 |
| C26 |
C27 |
C29 |
H24 |
240.2 |
239.9 |
| C29 |
C27 |
N28 |
H25 |
180.0 |
296.0 |
| C29 |
C27 |
N28 |
H26 |
300.0 |
60.0 |
| C16 |
C15 |
C14 |
H13 |
36.7 |
300.0 |
| C16 |
C15 |
C14 |
H14 |
277.0 |
60.0 |
| C14 |
C15 |
C16 |
H15 |
120.8 |
120.0 |
| C14 |
C15 |
C16 |
H16 |
239.2 |
240.0 |
| O17 |
C16 |
C15 |
N18 |
178.6 |
180.0 |
| C15 |
C16 |
N18 |
C19 |
179.7 |
180.0 |
| C15 |
C16 |
N18 |
H17 |
359.7 |
0.0 |
| H15 |
C15 |
C16 |
H16 |
118.5 |
120.1 |
| C23 |
C19 |
N18 |
H17 |
343.5 |
335.0 |
| N18 |
C19 |
C23 |
H18 |
240.9 |
240.1 |
| C23 |
C19 |
C20 |
O22 |
349.2 |
300.0 |
| C20 |
C19 |
C23 |
H18 |
119.5 |
120.0 |
| C15 |
C16 |
N18 |
O17 |
178.6 |
180.0 |
| N18 |
C16 |
C15 |
H15 |
266.8 |
60.0 |
| N18 |
C16 |
C15 |
H16 |
148.4 |
299.9 |
| C16 |
N18 |
C19 |
C20 |
283.8 |
275.0 |
| C19 |
N18 |
C16 |
H17 |
180.0 |
179.9 |
| C16 |
N18 |
C19 |
H18 |
45.1 |
35.1 |
| C15 |
C16 |
O17 |
N18 |
181.5 |
180.0 |
| O17 |
C16 |
C15 |
H15 |
85.4 |
240.0 |
| O17 |
C16 |
C15 |
H16 |
326.9 |
120.0 |
| O17 |
C16 |
N18 |
C19 |
1.1 |
359.9 |
| O17 |
C16 |
N18 |
H17 |
181.1 |
180.0 |
| S24 |
S25 |
C26 |
C27 |
118.8 |
70.0 |
| C29 |
C27 |
C26 |
H24 |
119.7 |
120.1 |
| C26 |
C27 |
N28 |
H25 |
58.1 |
176.1 |
| C26 |
C27 |
N28 |
H26 |
178.1 |
300.0 |
| C23 |
C19 |
N18 |
H18 |
118.4 |
119.9 |
| C16 |
N18 |
C19 |
H17 |
180.0 |
180.1 |
| N18 |
C19 |
C20 |
O21 |
50.9 |
0.0 |
| N18 |
C19 |
C20 |
O22 |
230.7 |
180.0 |
| C20 |
C19 |
N18 |
H18 |
238.7 |
240.0 |
| H25 |
N28 |
C27 |
H26 |
240.0 |
236.0 |
| C23 |
C19 |
C20 |
H18 |
240.5 |
240.0 |
| C20 |
C19 |
N18 |
H17 |
103.7 |
95.0 |
| N18 |
C19 |
C20 |
H18 |
122.0 |
120.0 |
| O21 |
C20 |
C19 |
O22 |
180.2 |
180.0 |
| C19 |
C20 |
O22 |
H19 |
180.2 |
180.0 |
| C19 |
C20 |
O21 |
O22 |
179.8 |
180.0 |
| O21 |
C20 |
C19 |
H18 |
289.0 |
240.0 |
| O21 |
C20 |
O22 |
H19 |
0.0 |
359.9 |
| C19 |
C20 |
O22 |
O21 |
180.2 |
180.0 |
| O22 |
C20 |
C19 |
H18 |
108.7 |
60.0 |
| H1 |
C01 |
C02 |
C03 |
299.7 |
303.4 |
| H2 |
C01 |
H1 |
H3 |
120.0 |
120.1 |
| H2 |
C01 |
C02 |
C03 |
59.6 |
63.3 |
| H1 |
C01 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C01 |
C02 |
C03 |
179.7 |
183.4 |
| H1 |
C01 |
H3 |
H2 |
119.9 |
120.0 |
| C02 |
C03 |
H4 |
H5 |
120.0 |
120.0 |
| C02 |
C03 |
H4 |
H6 |
240.0 |
240.0 |
| H5 |
C03 |
H4 |
H6 |
120.0 |
120.0 |
| C02 |
C03 |
H5 |
H4 |
239.9 |
240.0 |
| C02 |
C03 |
H5 |
H6 |
120.0 |
120.0 |
| H4 |
C03 |
H5 |
H6 |
240.0 |
240.0 |
| C02 |
C03 |
H6 |
H4 |
120.0 |
120.0 |
| C02 |
C03 |
H6 |
H5 |
240.0 |
240.0 |
| H4 |
C03 |
H6 |
H5 |
120.0 |
120.0 |
| H7 |
C04 |
O05 |
P06 |
322.9 |
60.0 |
| O05 |
C04 |
H7 |
H8 |
120.2 |
240.1 |
| H7 |
C04 |
C02 |
C03 |
178.3 |
60.0 |
| H8 |
C04 |
O05 |
P06 |
83.0 |
300.0 |
| O05 |
C04 |
H8 |
H7 |
239.8 |
120.0 |
| H8 |
C04 |
C02 |
C03 |
58.2 |
180.0 |
| H9 |
O07 |
P06 |
O08 |
238.4 |
300.0 |
| O32 |
C10 |
H11 |
C02 |
237.3 |
240.1 |
| H11 |
C10 |
O32 |
H29 |
227.0 |
180.0 |
| H11 |
C10 |
C02 |
C03 |
182.6 |
54.4 |
| H12 |
N13 |
C14 |
C15 |
274.4 |
0.0 |
| H12 |
N13 |
C14 |
H13 |
34.6 |
240.0 |
| H12 |
N13 |
C14 |
H14 |
154.3 |
120.0 |
| N13 |
C14 |
H13 |
C15 |
239.0 |
120.0 |
| H13 |
C14 |
N13 |
H12 |
34.6 |
240.0 |
| N13 |
C14 |
H13 |
H14 |
119.5 |
240.0 |
| H13 |
C14 |
C15 |
C16 |
36.7 |
300.0 |
| C15 |
C14 |
H13 |
H14 |
240.5 |
120.0 |
| H13 |
C14 |
C15 |
H15 |
157.5 |
60.0 |
| H13 |
C14 |
C15 |
H16 |
275.9 |
180.0 |
| N13 |
C14 |
H14 |
C15 |
120.9 |
240.0 |
| H14 |
C14 |
N13 |
H12 |
154.3 |
120.0 |
| N13 |
C14 |
H14 |
H13 |
240.5 |
120.0 |
| H14 |
C14 |
C15 |
C16 |
277.0 |
60.0 |
| C15 |
C14 |
H14 |
H13 |
119.5 |
240.0 |
| H14 |
C14 |
C15 |
H15 |
37.8 |
179.9 |
| H14 |
C14 |
C15 |
H16 |
156.2 |
299.9 |
| C14 |
C15 |
H15 |
C16 |
235.1 |
240.0 |
| H15 |
C15 |
C14 |
H13 |
157.5 |
60.0 |
| H15 |
C15 |
C14 |
H14 |
37.8 |
179.9 |
| C14 |
C15 |
H15 |
H16 |
117.5 |
120.0 |
| H15 |
C15 |
C16 |
N18 |
266.8 |
60.0 |
| H15 |
C15 |
C16 |
O17 |
85.4 |
240.0 |
| C16 |
C15 |
H15 |
H16 |
242.4 |
239.9 |
| C14 |
C15 |
H16 |
C16 |
124.9 |
120.0 |
| H16 |
C15 |
C14 |
H13 |
275.9 |
180.0 |
| H16 |
C15 |
C14 |
H14 |
156.2 |
299.9 |
| C14 |
C15 |
H16 |
H15 |
242.5 |
240.0 |
| H16 |
C15 |
C16 |
N18 |
148.4 |
299.9 |
| H16 |
C15 |
C16 |
O17 |
326.9 |
120.0 |
| C16 |
C15 |
H16 |
H15 |
117.6 |
120.0 |
| C16 |
N18 |
H17 |
C19 |
180.0 |
179.9 |
| H17 |
N18 |
C19 |
C20 |
103.7 |
95.0 |
| H17 |
N18 |
C19 |
H18 |
225.0 |
215.0 |
| N18 |
C19 |
H18 |
C20 |
237.1 |
240.0 |
| H18 |
C19 |
N18 |
H17 |
225.0 |
215.0 |
| H18 |
C19 |
C20 |
O21 |
289.0 |
240.0 |
| H18 |
C19 |
C20 |
O22 |
108.7 |
60.0 |
| S24 |
C23 |
H20 |
H21 |
118.9 |
240.0 |
| H20 |
C23 |
C19 |
H18 |
264.5 |
179.9 |
| S24 |
C23 |
H21 |
H20 |
241.1 |
120.0 |
| H21 |
C23 |
C19 |
H18 |
145.3 |
299.9 |
| S25 |
C26 |
H22 |
H23 |
118.2 |
240.0 |
| H22 |
C26 |
C27 |
H24 |
172.2 |
179.9 |
| S25 |
C26 |
H23 |
H22 |
241.8 |
119.9 |
| H23 |
C26 |
C27 |
H24 |
53.4 |
300.0 |
| H24 |
C27 |
N28 |
H25 |
300.8 |
56.0 |
| H24 |
C27 |
N28 |
H26 |
60.8 |
180.0 |
| C27 |
N28 |
H25 |
H26 |
120.0 |
124.0 |
| C27 |
N28 |
H26 |
H25 |
240.0 |
236.0 |
| H29 |
O32 |
C10 |
C02 |
107.2 |
60.1 |
| H29 |
O32 |
C10 |
H11 |
227.0 |
180.0 |