Atom Nomenclature for 9Z6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9Z6

Atom Name (V3) Atom Name (V2)
C11 C6
O12 O5
C10 C5
O32 O11
C02 C2
C04 C4
C01 C1
C03 C3
P06 P1
O09 O4
O05 O1
O07 O2
O08 O3
N13 N1
C14 C7
C15 C8
C16 C9
O17 O6
N18 N2
C19 C10
C20 C11
O21 O7
C23 C12
S24 S1
O22 O8
N28 N3
C27 C14
C29 C15
O31 O10
C26 C13
S25 S2
O30 O9
H11 H11
H29 H29
H7 H7
H8 H8
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H10 H10
H9 H9
H12 H12
H14 H14
H13 H13
H15 H15
H16 H16
H17 H17
H18 H18
H20 H20
H21 H21
H19 H19
H25 H25
H26 H26
H24 H24
H22 H22
H23 H23
H28 H28