PDB Chemical Component 9Z1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9Z1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O19 |
C18 |
1.224 |
1.216 |
| O21 |
C20 |
1.337 |
1.360 |
| C11 |
C8 |
1.526 |
1.530 |
| C12 |
C8 |
1.525 |
1.530 |
| C18 |
C20 |
1.490 |
1.481 |
| C18 |
N17 |
1.386 |
1.347 |
| C20 |
C22 |
1.351 |
1.324 |
| C24 |
C25 |
1.493 |
1.469 |
| C24 |
C23 |
1.495 |
1.355 |
| C25 |
C26 |
1.377 |
1.367 |
| C25 |
N29 |
1.344 |
1.358 |
| C26 |
N27 |
1.356 |
1.362 |
| N29 |
C28 |
1.357 |
1.302 |
| N27 |
C28 |
1.362 |
1.359 |
| C8 |
C7 |
1.557 |
1.530 |
| C8 |
C9 |
1.509 |
1.508 |
| C22 |
C7 |
1.524 |
1.509 |
| N17 |
C23 |
1.356 |
1.397 |
| N17 |
C13 |
1.475 |
1.458 |
| C23 |
C30 |
1.402 |
1.469 |
| C7 |
C13 |
1.562 |
1.538 |
| C7 |
C6 |
1.520 |
1.515 |
| C9 |
C10 |
1.318 |
1.310 |
| C13 |
N32 |
1.470 |
1.460 |
| C13 |
N14 |
1.465 |
1.477 |
| C30 |
O31 |
1.287 |
1.217 |
| C30 |
N32 |
1.351 |
1.351 |
| C6 |
C5 |
1.391 |
1.378 |
| C6 |
C1 |
1.369 |
1.401 |
| N14 |
O15 |
1.284 |
1.463 |
| N14 |
C1 |
1.401 |
1.393 |
| O15 |
C16 |
1.435 |
1.430 |
| C5 |
C4 |
1.393 |
1.391 |
| C1 |
C2 |
1.391 |
1.395 |
| C4 |
C3 |
1.391 |
1.380 |
| C2 |
C3 |
1.388 |
1.387 |
| C11 |
H1 |
1.100 |
1.091 |
| C11 |
H2 |
1.100 |
1.090 |
| C11 |
H3 |
1.100 |
1.090 |
| C10 |
H4 |
1.080 |
1.080 |
| C10 |
H5 |
1.080 |
1.080 |
| C12 |
H6 |
1.100 |
1.091 |
| C12 |
H7 |
1.100 |
1.089 |
| C12 |
H8 |
1.100 |
1.091 |
| C16 |
H9 |
1.100 |
1.090 |
| C16 |
H10 |
1.100 |
1.090 |
| C16 |
H11 |
1.100 |
1.090 |
| C2 |
H12 |
1.080 |
1.080 |
| C22 |
H13 |
1.080 |
1.080 |
| C24 |
H14 |
1.080 |
1.079 |
| C26 |
H15 |
1.080 |
1.080 |
| C28 |
H16 |
1.080 |
1.080 |
| C3 |
H17 |
1.080 |
1.080 |
| C4 |
H18 |
1.080 |
1.080 |
| C5 |
H19 |
1.080 |
1.079 |
| C9 |
H20 |
1.080 |
1.080 |
| N27 |
H21 |
1.000 |
0.969 |
| N32 |
H23 |
1.000 |
0.970 |
| O21 |
H24 |
0.950 |
0.967 |
Bond Angles for 9Z1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C8 |
C12 |
106.9 |
109.5 |
| C11 |
C8 |
C7 |
109.5 |
109.5 |
| C11 |
C8 |
C9 |
106.2 |
109.5 |
| C8 |
C11 |
H1 |
109.5 |
109.4 |
| C8 |
C11 |
H2 |
109.5 |
109.4 |
| C8 |
C11 |
H3 |
109.4 |
109.5 |
| C12 |
C8 |
C7 |
112.1 |
109.4 |
| C12 |
C8 |
C9 |
105.7 |
109.5 |
| C8 |
C12 |
H6 |
109.5 |
109.5 |
| C8 |
C12 |
H7 |
109.5 |
109.5 |
| C8 |
C12 |
H8 |
109.4 |
109.4 |
| C20 |
C18 |
N17 |
118.7 |
116.1 |
| C18 |
C20 |
C22 |
121.9 |
120.5 |
| C18 |
N17 |
C23 |
132.6 |
129.3 |
| C20 |
C22 |
C7 |
123.4 |
124.3 |
| C20 |
C22 |
H13 |
118.3 |
117.9 |
| C24 |
C25 |
C26 |
120.9 |
126.2 |
| C24 |
C25 |
N29 |
126.1 |
126.3 |
| C25 |
C24 |
H14 |
117.8 |
120.0 |
| C24 |
C23 |
C30 |
129.0 |
126.3 |
| C26 |
C25 |
N29 |
112.9 |
107.5 |
| C25 |
C26 |
N27 |
103.7 |
106.7 |
| C25 |
C26 |
H15 |
128.2 |
126.6 |
| C25 |
N29 |
C28 |
104.3 |
109.0 |
| C26 |
N27 |
C28 |
109.3 |
107.6 |
| N27 |
C26 |
H15 |
128.1 |
126.7 |
| C26 |
N27 |
H21 |
125.4 |
126.2 |
| N29 |
C28 |
H16 |
125.1 |
125.4 |
| N27 |
C28 |
H16 |
125.1 |
125.4 |
| C8 |
C9 |
H20 |
119.8 |
120.0 |
| C22 |
C7 |
C6 |
105.3 |
107.1 |
| C7 |
C22 |
H13 |
118.3 |
117.9 |
| N17 |
C13 |
N32 |
106.8 |
106.7 |
| C23 |
C30 |
O31 |
124.0 |
125.3 |
| C23 |
C30 |
N32 |
115.2 |
109.4 |
| C7 |
C13 |
N32 |
124.7 |
112.8 |
| C7 |
C13 |
N14 |
102.3 |
103.2 |
| C9 |
C10 |
H4 |
120.0 |
120.0 |
| C9 |
C10 |
H5 |
120.0 |
120.0 |
| N14 |
C13 |
N32 |
93.3 |
109.9 |
| C13 |
N32 |
C30 |
103.1 |
107.5 |
| C13 |
N32 |
H23 |
128.5 |
126.2 |
| C13 |
N14 |
O15 |
123.4 |
111.0 |
| N32 |
C30 |
O31 |
120.8 |
125.3 |
| C30 |
N32 |
H23 |
128.5 |
126.3 |
| C6 |
C5 |
H19 |
120.5 |
121.5 |
| O15 |
C16 |
H9 |
109.5 |
109.5 |
| O15 |
C16 |
H10 |
109.5 |
109.5 |
| O15 |
C16 |
H11 |
109.5 |
109.5 |
| C5 |
C4 |
H18 |
119.5 |
119.3 |
| C1 |
C2 |
C3 |
118.5 |
117.1 |
| C1 |
C2 |
H12 |
120.8 |
121.5 |
| C4 |
C3 |
H17 |
120.2 |
119.0 |
| C3 |
C2 |
H12 |
120.7 |
121.4 |
| C2 |
C3 |
H17 |
120.2 |
119.0 |
| H1 |
C11 |
H2 |
109.4 |
109.5 |
| H1 |
C11 |
H3 |
109.5 |
109.5 |
| H2 |
C11 |
H3 |
109.5 |
109.5 |
| H4 |
C10 |
H5 |
120.0 |
120.0 |
| H6 |
C12 |
H7 |
109.4 |
109.5 |
| H6 |
C12 |
H8 |
109.5 |
109.4 |
| H7 |
C12 |
H8 |
109.5 |
109.5 |
| H9 |
C16 |
H10 |
109.5 |
109.5 |
| H9 |
C16 |
H11 |
109.4 |
109.5 |
| H10 |
C16 |
H11 |
109.5 |
109.4 |
Torsion Angles for 9Z1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O21 |
C20 |
C22 |
H13 |
0.8 |
359.3 |
| C12 |
C8 |
C11 |
C7 |
121.7 |
240.0 |
| C12 |
C8 |
C11 |
C9 |
247.5 |
120.0 |
| C11 |
C8 |
C12 |
H6 |
180.0 |
79.0 |
| C11 |
C8 |
C12 |
H7 |
300.0 |
199.0 |
| C11 |
C8 |
C12 |
H8 |
60.0 |
319.1 |
| C11 |
C8 |
C9 |
H20 |
357.6 |
180.0 |
| H1 |
C11 |
C8 |
H2 |
240.0 |
240.0 |
| H1 |
C11 |
C8 |
H3 |
120.0 |
120.0 |
| H2 |
C11 |
C8 |
H3 |
240.0 |
240.0 |
| C11 |
C8 |
C12 |
C7 |
240.0 |
120.0 |
| C11 |
C8 |
C12 |
C9 |
112.9 |
239.9 |
| C12 |
C8 |
C11 |
H1 |
180.0 |
55.3 |
| C12 |
C8 |
C11 |
H2 |
300.0 |
175.3 |
| C12 |
C8 |
C11 |
H3 |
60.0 |
295.3 |
| C12 |
C8 |
C9 |
H20 |
110.9 |
60.0 |
| H6 |
C12 |
C8 |
H7 |
240.0 |
239.9 |
| H6 |
C12 |
C8 |
H8 |
120.0 |
119.9 |
| H7 |
C12 |
C8 |
H8 |
240.0 |
240.0 |
| C20 |
C18 |
N17 |
C23 |
181.4 |
195.4 |
| C18 |
C20 |
C22 |
C7 |
360.0 |
359.5 |
| C18 |
C20 |
C22 |
H13 |
180.0 |
179.3 |
| N17 |
C18 |
C20 |
C22 |
10.4 |
6.9 |
| C18 |
N17 |
C13 |
N32 |
184.0 |
198.2 |
| C22 |
C20 |
C18 |
N17 |
10.4 |
6.9 |
| C20 |
C22 |
C7 |
C6 |
232.8 |
227.8 |
| C7 |
C22 |
C20 |
H13 |
180.0 |
180.1 |
| C25 |
C24 |
C23 |
C30 |
1.5 |
7.9 |
| C26 |
C25 |
C24 |
N29 |
179.1 |
180.2 |
| C24 |
C25 |
C26 |
N27 |
180.3 |
180.0 |
| C24 |
C25 |
C26 |
H15 |
0.3 |
0.1 |
| C24 |
C25 |
N29 |
C28 |
179.6 |
179.8 |
| C18 |
N17 |
C23 |
C24 |
0.2 |
344.9 |
| C24 |
C23 |
C30 |
O31 |
359.4 |
5.6 |
| C24 |
C23 |
C30 |
N32 |
177.9 |
185.7 |
| C24 |
C25 |
C26 |
N29 |
180.8 |
179.8 |
| C26 |
C25 |
C24 |
H14 |
312.7 |
355.5 |
| C26 |
C25 |
N29 |
C28 |
0.4 |
359.7 |
| C25 |
C26 |
N27 |
C28 |
0.3 |
0.0 |
| N27 |
C26 |
C25 |
H15 |
180.0 |
179.9 |
| C25 |
C26 |
N27 |
H21 |
180.3 |
180.0 |
| C24 |
C25 |
N29 |
C26 |
179.2 |
180.2 |
| N29 |
C25 |
C24 |
H14 |
133.6 |
175.3 |
| N29 |
C25 |
C26 |
N27 |
359.5 |
0.2 |
| N29 |
C25 |
C26 |
H15 |
179.5 |
180.3 |
| C25 |
N29 |
C28 |
H16 |
179.8 |
180.2 |
| N27 |
C26 |
C25 |
N29 |
359.5 |
0.2 |
| C25 |
C26 |
N27 |
H15 |
180.0 |
180.1 |
| C26 |
N27 |
C28 |
H16 |
179.9 |
179.9 |
| N27 |
C28 |
N29 |
H16 |
180.0 |
180.2 |
| C25 |
N29 |
C28 |
N27 |
359.8 |
0.4 |
| C28 |
N27 |
C26 |
H15 |
180.3 |
179.9 |
| C26 |
N27 |
C28 |
H21 |
180.0 |
180.0 |
| N29 |
C28 |
N27 |
H16 |
180.0 |
179.8 |
| C11 |
C8 |
C7 |
C12 |
118.4 |
240.0 |
| C11 |
C8 |
C7 |
C9 |
239.9 |
120.0 |
| C7 |
C8 |
C11 |
H1 |
58.4 |
175.3 |
| C7 |
C8 |
C11 |
H2 |
178.4 |
295.3 |
| C7 |
C8 |
C11 |
H3 |
298.3 |
55.3 |
| C12 |
C8 |
C7 |
C9 |
121.4 |
240.0 |
| C7 |
C8 |
C12 |
H6 |
300.0 |
319.0 |
| C7 |
C8 |
C12 |
H7 |
60.0 |
79.0 |
| C7 |
C8 |
C12 |
H8 |
180.0 |
199.1 |
| C8 |
C7 |
C22 |
H13 |
286.9 |
283.1 |
| C8 |
C7 |
C13 |
N32 |
53.1 |
33.1 |
| C8 |
C7 |
C13 |
N14 |
156.0 |
151.5 |
| C11 |
C8 |
C9 |
C12 |
246.7 |
120.1 |
| C11 |
C8 |
C9 |
C7 |
121.9 |
240.0 |
| C9 |
C8 |
C11 |
H1 |
292.5 |
295.2 |
| C9 |
C8 |
C11 |
H2 |
52.5 |
55.2 |
| C9 |
C8 |
C11 |
H3 |
172.5 |
175.2 |
| C12 |
C8 |
C9 |
C7 |
235.2 |
119.9 |
| C9 |
C8 |
C12 |
H6 |
67.2 |
199.0 |
| C9 |
C8 |
C12 |
H7 |
187.1 |
319.1 |
| C9 |
C8 |
C12 |
H8 |
307.1 |
79.1 |
| C8 |
C9 |
C10 |
H4 |
360.0 |
0.0 |
| C8 |
C9 |
C10 |
H5 |
180.0 |
179.9 |
| C11 |
C8 |
C7 |
C22 |
18.5 |
292.6 |
| C12 |
C8 |
C7 |
C22 |
260.1 |
52.7 |
| C20 |
C22 |
C7 |
H13 |
180.0 |
179.9 |
| C22 |
C7 |
C13 |
N32 |
176.4 |
159.0 |
| C22 |
C7 |
C13 |
N14 |
279.4 |
277.5 |
| C23 |
N17 |
C13 |
N32 |
6.2 |
17.2 |
| N17 |
C23 |
C30 |
O31 |
180.2 |
185.6 |
| N17 |
C23 |
C30 |
N32 |
358.7 |
5.7 |
| C7 |
C13 |
N17 |
N32 |
147.7 |
123.6 |
| N14 |
C13 |
N17 |
N32 |
261.6 |
239.3 |
| N17 |
C13 |
N32 |
C30 |
353.4 |
346.1 |
| N17 |
C13 |
N32 |
H23 |
173.4 |
166.1 |
| N17 |
C13 |
N14 |
O15 |
19.7 |
328.7 |
| C18 |
N17 |
C23 |
C30 |
179.5 |
164.9 |
| C13 |
N32 |
C30 |
C23 |
5.1 |
5.3 |
| N32 |
C30 |
C23 |
O31 |
178.5 |
180.1 |
| C23 |
C30 |
N32 |
H23 |
185.1 |
185.3 |
| C11 |
C8 |
C7 |
C13 |
141.8 |
57.3 |
| C12 |
C8 |
C7 |
C13 |
23.4 |
177.3 |
| N17 |
C13 |
C7 |
N32 |
218.5 |
239.9 |
| N14 |
C13 |
C7 |
N32 |
102.9 |
118.5 |
| C7 |
C13 |
N32 |
C30 |
208.1 |
223.1 |
| C7 |
C13 |
N32 |
H23 |
28.1 |
43.1 |
| C7 |
C13 |
N14 |
O15 |
144.5 |
89.3 |
| C11 |
C8 |
C7 |
C6 |
259.6 |
171.2 |
| C12 |
C8 |
C7 |
C6 |
141.2 |
291.3 |
| C6 |
C7 |
C22 |
H13 |
52.8 |
47.9 |
| C6 |
C7 |
C13 |
N32 |
286.2 |
272.0 |
| C6 |
C7 |
C13 |
N14 |
29.1 |
30.5 |
| C7 |
C6 |
C5 |
H19 |
0.6 |
359.5 |
| C11 |
C8 |
C9 |
C10 |
177.6 |
0.0 |
| H4 |
C10 |
C9 |
H5 |
180.0 |
180.1 |
| C23 |
C30 |
N32 |
C13 |
5.1 |
5.3 |
| C7 |
C13 |
N32 |
N14 |
107.5 |
114.5 |
| N32 |
C13 |
N14 |
O15 |
271.2 |
209.8 |
| C13 |
N32 |
C30 |
O31 |
183.6 |
185.4 |
| C30 |
N32 |
C13 |
H23 |
180.0 |
180.0 |
| N17 |
C13 |
N14 |
N32 |
108.5 |
118.9 |
| C7 |
C13 |
N14 |
N32 |
233.4 |
239.5 |
| N14 |
C13 |
N32 |
C30 |
100.6 |
108.7 |
| N14 |
C13 |
N32 |
H23 |
280.6 |
288.6 |
| C23 |
C30 |
O31 |
N32 |
178.4 |
180.1 |
| O31 |
C30 |
N32 |
H23 |
3.6 |
5.4 |
| C23 |
C30 |
N32 |
O31 |
181.4 |
179.9 |
| C13 |
N32 |
C30 |
H23 |
180.0 |
180.0 |
| C22 |
C7 |
C6 |
C5 |
274.9 |
275.6 |
| C6 |
C5 |
C4 |
H18 |
178.3 |
180.0 |
| C6 |
C1 |
C2 |
H12 |
180.8 |
179.8 |
| O15 |
N14 |
C13 |
N32 |
271.2 |
209.8 |
| N14 |
O15 |
C16 |
H9 |
180.0 |
180.0 |
| N14 |
O15 |
C16 |
H10 |
300.0 |
300.0 |
| N14 |
O15 |
C16 |
H11 |
60.0 |
60.0 |
| N14 |
C1 |
C2 |
H12 |
0.5 |
359.4 |
| H9 |
C16 |
O15 |
H10 |
240.0 |
240.0 |
| H9 |
C16 |
O15 |
H11 |
120.0 |
120.0 |
| H10 |
C16 |
O15 |
H11 |
240.0 |
240.0 |
| C5 |
C4 |
C3 |
H17 |
181.1 |
180.1 |
| C3 |
C2 |
C1 |
H12 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H17 |
179.4 |
180.0 |
| C4 |
C3 |
C2 |
H12 |
179.4 |
180.0 |
| C2 |
C3 |
C4 |
H17 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H12 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H17 |
180.0 |
180.0 |
| H1 |
C11 |
C8 |
C12 |
180.0 |
55.3 |
| H1 |
C11 |
C8 |
C7 |
58.4 |
175.3 |
| H1 |
C11 |
C8 |
C9 |
292.5 |
295.2 |
| C8 |
C11 |
H1 |
H2 |
120.0 |
120.0 |
| C8 |
C11 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C11 |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
C11 |
C8 |
C12 |
300.0 |
175.3 |
| H2 |
C11 |
C8 |
C7 |
178.4 |
295.3 |
| H2 |
C11 |
C8 |
C9 |
52.5 |
55.2 |
| C8 |
C11 |
H2 |
H1 |
240.0 |
240.0 |
| C8 |
C11 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C11 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C11 |
C8 |
C12 |
60.0 |
295.3 |
| H3 |
C11 |
C8 |
C7 |
298.3 |
55.3 |
| H3 |
C11 |
C8 |
C9 |
172.5 |
175.2 |
| C8 |
C11 |
H3 |
H1 |
120.0 |
120.0 |
| C8 |
C11 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C11 |
H3 |
H2 |
120.0 |
120.0 |
| C9 |
C10 |
H4 |
H5 |
180.0 |
179.9 |
| C9 |
C10 |
H5 |
H4 |
180.0 |
180.1 |
| H6 |
C12 |
C8 |
C7 |
300.0 |
319.0 |
| H6 |
C12 |
C8 |
C9 |
67.2 |
199.0 |
| C8 |
C12 |
H6 |
H7 |
120.0 |
120.1 |
| C8 |
C12 |
H6 |
H8 |
240.0 |
240.1 |
| H7 |
C12 |
H6 |
H8 |
120.0 |
120.0 |
| H7 |
C12 |
C8 |
C7 |
60.0 |
79.0 |
| H7 |
C12 |
C8 |
C9 |
187.1 |
319.1 |
| C8 |
C12 |
H7 |
H6 |
240.0 |
239.9 |
| C8 |
C12 |
H7 |
H8 |
120.0 |
120.0 |
| H6 |
C12 |
H7 |
H8 |
240.0 |
240.1 |
| H8 |
C12 |
C8 |
C7 |
180.0 |
199.1 |
| H8 |
C12 |
C8 |
C9 |
307.1 |
79.1 |
| C8 |
C12 |
H8 |
H6 |
120.0 |
120.0 |
| C8 |
C12 |
H8 |
H7 |
240.0 |
240.0 |
| H6 |
C12 |
H8 |
H7 |
120.0 |
120.0 |
| O15 |
C16 |
H9 |
H10 |
120.0 |
120.0 |
| O15 |
C16 |
H9 |
H11 |
240.0 |
240.0 |
| H10 |
C16 |
H9 |
H11 |
120.0 |
120.0 |
| O15 |
C16 |
H10 |
H9 |
239.9 |
240.0 |
| O15 |
C16 |
H10 |
H11 |
120.0 |
120.0 |
| H9 |
C16 |
H10 |
H11 |
240.1 |
240.0 |
| O15 |
C16 |
H11 |
H9 |
120.0 |
120.0 |
| O15 |
C16 |
H11 |
H10 |
240.0 |
240.0 |
| H9 |
C16 |
H11 |
H10 |
120.0 |
120.0 |
| C1 |
C2 |
H12 |
C3 |
180.0 |
180.0 |
| H12 |
C2 |
C3 |
H17 |
359.4 |
0.0 |
| C20 |
C22 |
H13 |
C7 |
180.0 |
180.1 |
| H13 |
C22 |
C7 |
C6 |
52.8 |
47.9 |
| H14 |
C24 |
C25 |
C26 |
312.7 |
355.5 |
| H14 |
C24 |
C25 |
N29 |
133.6 |
175.3 |
| H14 |
C24 |
C23 |
C30 |
181.5 |
188.0 |
| H15 |
C26 |
C25 |
N29 |
179.5 |
180.3 |
| C25 |
C26 |
H15 |
N27 |
180.0 |
179.9 |
| H15 |
C26 |
N27 |
C28 |
180.3 |
179.9 |
| H15 |
C26 |
N27 |
H21 |
0.3 |
359.9 |
| H17 |
C3 |
C2 |
H12 |
359.4 |
0.0 |
| H18 |
C4 |
C3 |
H17 |
1.1 |
0.1 |
| H19 |
C5 |
C4 |
H18 |
358.3 |
360.0 |
| H20 |
C9 |
C10 |
H4 |
180.0 |
180.0 |
| H20 |
C9 |
C10 |
H5 |
360.0 |
359.9 |
| C26 |
N27 |
H21 |
C28 |
180.0 |
180.0 |
| H21 |
N27 |
C26 |
H15 |
0.3 |
359.9 |
| H21 |
N27 |
C28 |
H16 |
359.9 |
359.9 |
| C13 |
N32 |
H23 |
C30 |
180.0 |
180.0 |
| H23 |
N32 |
C30 |
O31 |
3.6 |
5.4 |