Atom Nomenclature for 9YW

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9YW

Atom Name (V3) Atom Name (V2)
C10 C10
C6 C01
C5 C02
C4 C03
C3 C04
C2 C05
C1 C06
C09 C09
O5 O07
O1 O08
O11 O11
O12 O12
O2 O13
O3 O14
O4 O15
O6 O16
H61 H1
H62 H2
H5 H3
H4 H4
H3 H5
H2 H6
H1 H7
H8 H8
H9 H9
H10 H10
HO2 H11
HO3 H12
HO4 H13
HO6 H14