PDB Chemical Component 9YP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9YP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OAB |
CAV |
1.375 |
1.219 |
| OAH |
PBB |
1.555 |
1.480 |
| NAQ |
CAI |
1.346 |
1.301 |
| NAQ |
CAX |
1.385 |
1.355 |
| OAD |
PBB |
1.495 |
1.610 |
| CAV |
CAX |
1.428 |
1.414 |
| CAV |
NAR |
1.349 |
1.352 |
| PBB |
CAO |
1.829 |
1.824 |
| PBB |
OAG |
1.555 |
1.610 |
| CAI |
NAZ |
1.344 |
1.365 |
| CAX |
CAW |
1.381 |
1.399 |
| CAO |
OAT |
1.379 |
1.430 |
| NAR |
CAU |
1.347 |
1.363 |
| NAZ |
CAW |
1.384 |
1.367 |
| NAZ |
CAP |
1.433 |
1.466 |
| CAW |
NAJ |
1.377 |
1.338 |
| CAN |
OAT |
1.380 |
1.428 |
| CAN |
CAY |
1.490 |
1.531 |
| CAU |
NAJ |
1.339 |
1.314 |
| CAU |
NAA |
1.429 |
1.373 |
| CAP |
CAY |
1.497 |
1.530 |
| CAY |
CAM |
1.488 |
1.530 |
| CAM |
OAS |
1.375 |
1.430 |
| OAS |
CAK |
1.376 |
1.429 |
| CAK |
CAL |
1.488 |
1.529 |
| OAF |
PBA |
1.559 |
1.480 |
| CAL |
PBA |
1.824 |
1.823 |
| OAE |
PBA |
1.558 |
1.610 |
| PBA |
OAC |
1.497 |
1.610 |
| OAE |
H1 |
0.950 |
0.967 |
| OAC |
H2 |
0.950 |
0.968 |
| CAL |
H3 |
1.100 |
1.090 |
| CAL |
H4 |
1.100 |
1.090 |
| CAK |
H5 |
1.100 |
1.090 |
| CAK |
H6 |
1.100 |
1.090 |
| CAM |
H7 |
1.100 |
1.090 |
| CAM |
H8 |
1.100 |
1.090 |
| CAY |
H9 |
1.100 |
1.090 |
| CAN |
H10 |
1.100 |
1.090 |
| CAN |
H11 |
1.100 |
1.089 |
| CAO |
H12 |
1.100 |
1.090 |
| CAO |
H13 |
1.100 |
1.090 |
| OAG |
H14 |
0.950 |
0.967 |
| OAD |
H15 |
0.950 |
0.967 |
| CAP |
H16 |
1.100 |
1.090 |
| CAP |
H17 |
1.100 |
1.091 |
| NAA |
H18 |
1.000 |
0.970 |
| NAA |
H19 |
1.000 |
0.970 |
| NAR |
H20 |
1.000 |
0.970 |
| CAI |
H21 |
1.080 |
1.080 |
Bond Angles for 9YP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAB |
CAV |
CAX |
121.4 |
120.8 |
| NAQ |
CAI |
H21 |
125.9 |
125.1 |
| CAV |
NAR |
H20 |
119.0 |
119.9 |
| PBB |
CAO |
H12 |
106.7 |
109.5 |
| PBB |
CAO |
H13 |
106.7 |
109.5 |
| PBB |
OAG |
H14 |
109.5 |
114.0 |
| NAZ |
CAW |
NAJ |
133.6 |
134.2 |
| NAZ |
CAP |
H16 |
108.0 |
109.5 |
| NAZ |
CAP |
H17 |
108.0 |
109.4 |
| OAT |
CAN |
H10 |
107.0 |
109.4 |
| OAT |
CAN |
H11 |
107.0 |
109.5 |
| CAN |
CAY |
H9 |
108.4 |
109.5 |
| CAU |
NAA |
H18 |
120.0 |
120.0 |
| CAU |
NAA |
H19 |
120.0 |
120.0 |
| CAP |
CAY |
H9 |
108.4 |
109.4 |
| CAY |
CAM |
H7 |
107.4 |
109.5 |
| CAY |
CAM |
H8 |
107.4 |
109.5 |
| OAS |
CAK |
H5 |
107.8 |
109.5 |
| OAS |
CAK |
H6 |
107.8 |
109.4 |
| CAK |
CAL |
H3 |
107.5 |
109.5 |
| CAK |
CAL |
H4 |
107.5 |
109.5 |
| OAF |
PBA |
OAC |
109.5 |
109.4 |
| OAE |
PBA |
OAC |
109.6 |
109.5 |
| PBA |
OAE |
H1 |
109.5 |
114.0 |
| PBA |
OAC |
H2 |
109.5 |
113.9 |
| H3 |
CAL |
H4 |
109.5 |
109.4 |
| H5 |
CAK |
H6 |
109.5 |
109.4 |
| H7 |
CAM |
H8 |
109.5 |
109.5 |
| H10 |
CAN |
H11 |
109.5 |
109.5 |
| H12 |
CAO |
H13 |
109.5 |
109.5 |
| H16 |
CAP |
H17 |
109.5 |
109.5 |
| H18 |
NAA |
H19 |
120.0 |
120.0 |
Torsion Angles for 9YP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAB |
CAV |
NAR |
H20 |
0.0 |
0.0 |
| OAH |
PBB |
CAO |
H12 |
295.7 |
180.0 |
| OAH |
PBB |
CAO |
H13 |
52.6 |
60.0 |
| OAH |
PBB |
OAG |
H14 |
360.0 |
60.0 |
| OAD |
PBB |
CAO |
H12 |
55.1 |
300.0 |
| OAD |
PBB |
CAO |
H13 |
172.1 |
180.0 |
| OAD |
PBB |
OAG |
H14 |
240.8 |
300.0 |
| CAX |
CAV |
NAR |
H20 |
180.0 |
180.0 |
| H12 |
CAO |
PBB |
H13 |
243.1 |
120.0 |
| OAG |
PBB |
CAO |
H12 |
175.4 |
60.0 |
| OAG |
PBB |
CAO |
H13 |
292.3 |
300.0 |
| CAI |
NAZ |
CAP |
H16 |
25.5 |
144.7 |
| CAI |
NAZ |
CAP |
H17 |
143.8 |
24.7 |
| CAO |
OAT |
CAN |
H10 |
299.1 |
60.0 |
| CAO |
OAT |
CAN |
H11 |
56.4 |
300.0 |
| NAR |
CAU |
NAA |
H18 |
179.8 |
180.1 |
| NAR |
CAU |
NAA |
H19 |
359.8 |
0.0 |
| CAW |
NAZ |
CAP |
H16 |
204.1 |
325.0 |
| CAW |
NAZ |
CAP |
H17 |
322.4 |
205.0 |
| NAZ |
CAP |
CAY |
H9 |
304.0 |
305.0 |
| H16 |
CAP |
NAZ |
H17 |
241.7 |
120.0 |
| OAT |
CAN |
CAY |
H9 |
216.9 |
305.0 |
| H10 |
CAN |
OAT |
H11 |
242.7 |
120.1 |
| CAP |
CAY |
CAN |
H9 |
241.6 |
240.0 |
| CAN |
CAY |
CAM |
H7 |
253.4 |
175.0 |
| CAN |
CAY |
CAM |
H8 |
11.1 |
55.0 |
| H18 |
NAA |
CAU |
H19 |
180.1 |
180.0 |
| CAN |
CAY |
CAP |
H9 |
118.4 |
120.0 |
| CAP |
CAY |
CAM |
H7 |
131.1 |
55.0 |
| CAP |
CAY |
CAM |
H8 |
248.8 |
295.0 |
| H7 |
CAM |
CAY |
H8 |
242.3 |
120.0 |
| CAM |
OAS |
CAK |
H5 |
16.9 |
60.0 |
| CAM |
OAS |
CAK |
H6 |
134.9 |
300.0 |
| OAS |
CAK |
CAL |
H3 |
212.7 |
59.9 |
| OAS |
CAK |
CAL |
H4 |
330.4 |
300.0 |
| H5 |
CAK |
OAS |
H6 |
242.0 |
119.9 |
| H3 |
CAL |
CAK |
H4 |
242.3 |
120.0 |
| OAE |
PBA |
OAF |
OAC |
239.8 |
120.0 |
| OAF |
PBA |
OAE |
H1 |
360.0 |
300.0 |
| OAF |
PBA |
OAC |
H2 |
0.0 |
180.0 |
| CAL |
PBA |
OAE |
H1 |
120.6 |
180.0 |
| CAL |
PBA |
OAC |
H2 |
240.0 |
300.0 |
| OAF |
PBA |
OAE |
OAC |
120.1 |
240.0 |
| OAE |
PBA |
OAC |
H2 |
120.2 |
60.0 |
| OAC |
PBA |
OAE |
H1 |
239.8 |
60.0 |
| H1 |
OAE |
PBA |
OAC |
239.8 |
60.0 |
| CAK |
CAL |
H3 |
H4 |
116.5 |
240.0 |
| CAK |
CAL |
H4 |
H3 |
243.6 |
120.0 |
| OAS |
CAK |
H5 |
H6 |
116.9 |
240.1 |
| H5 |
CAK |
CAL |
H3 |
91.7 |
180.0 |
| H5 |
CAK |
CAL |
H4 |
209.4 |
60.0 |
| OAS |
CAK |
H6 |
H5 |
243.1 |
120.0 |
| H6 |
CAK |
CAL |
H3 |
333.7 |
300.0 |
| H6 |
CAK |
CAL |
H4 |
91.4 |
180.0 |
| CAY |
CAM |
H7 |
H8 |
116.3 |
240.0 |
| CAY |
CAM |
H8 |
H7 |
243.7 |
120.0 |
| H9 |
CAY |
CAM |
H7 |
11.7 |
295.0 |
| H9 |
CAY |
CAM |
H8 |
129.4 |
175.0 |
| OAT |
CAN |
H10 |
H11 |
115.6 |
240.0 |
| H10 |
CAN |
CAY |
H9 |
95.5 |
64.9 |
| OAT |
CAN |
H11 |
H10 |
244.3 |
120.0 |
| H11 |
CAN |
CAY |
H9 |
338.3 |
185.0 |
| PBB |
CAO |
H12 |
H13 |
115.1 |
240.0 |
| PBB |
CAO |
H13 |
H12 |
244.9 |
120.0 |
| NAZ |
CAP |
H16 |
H17 |
117.3 |
240.1 |
| H16 |
CAP |
CAY |
H9 |
183.2 |
65.0 |
| NAZ |
CAP |
H17 |
H16 |
242.7 |
120.0 |
| H17 |
CAP |
CAY |
H9 |
64.9 |
185.1 |
| CAU |
NAA |
H18 |
H19 |
179.9 |
180.0 |
| CAU |
NAA |
H19 |
H18 |
180.1 |
180.0 |