PDB Chemical Component 9YN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9YN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CD2 CG1 1.532 1.530
CG1 CB 1.530 1.530
CG1 CD1 1.527 1.530
CB CA 1.534 1.530
O C 1.224 1.213
CA N 1.477 1.469
CA C 1.507 1.507
OAL CAK 1.432 1.429
C NAI 1.336 1.348
CAK CAJ 1.525 1.544
CAK CAM 1.525 1.545
NAI CAJ 1.463 1.465
CAJ CAQ 1.530 1.545
CAM CAN 1.525 1.529
CAM OAP 1.430 1.444
CAN OAO 1.431 1.429
CAQ OAP 1.430 1.444
CAQ N9 1.488 1.465
C8 N9 1.351 1.363
C8 N7 1.354 1.302
N9 C4 1.335 1.372
N7 C5 1.344 1.354
C4 C5 1.475 1.405
C4 N3 1.360 1.329
C5 C6 1.483 1.406
N3 C2 1.475 1.316
C6 N6 1.353 1.383
C6 N1 1.356 1.329
C2 N1 1.476 1.321
CA H1 1.100 1.090
CB H2 1.100 1.091
CB H3 1.100 1.089
CG1 H4 1.100 1.090
CD1 H5 1.100 1.091
CD1 H6 1.100 1.090
CD1 H7 1.100 1.090
CD2 H8 1.100 1.089
CD2 H9 1.100 1.090
CD2 H10 1.100 1.091
N H11 1.000 1.009
N H12 1.000 1.009
NAI H14 1.000 0.970
CAJ H15 1.100 1.090
CAK H16 1.100 1.090
OAL H17 0.950 0.967
CAM H18 1.100 1.090
CAN H19 1.100 1.090
CAN H20 1.100 1.090
OAO H21 0.950 0.967
CAQ H22 1.100 1.090
C8 H23 1.080 1.081
N6 H24 1.000 0.971
N6 H25 1.000 0.970
C2 H26 1.080 1.079

Bond Angles for 9YN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CD2 CG1 H4 107.3 109.4
CG1 CB H2 108.8 109.4
CG1 CB H3 108.8 109.5
CD1 CG1 H4 107.3 109.5
CG1 CD1 H5 109.5 109.4
CG1 CD1 H6 109.5 109.5
CG1 CD1 H7 109.4 109.5
CB CA N 109.1 109.5
CB CA H1 108.4 109.4
O C NAI 124.3 120.0
N CA H1 109.1 109.5
CA N H11 109.5 111.0
CA N H12 109.4 111.0
CA C NAI 115.6 120.0
OAL CAK CAM 110.2 110.5
OAL CAK H16 109.9 110.5
C NAI CAJ 123.8 120.0
C NAI H14 118.1 120.0
CAK CAJ CAQ 106.0 104.1
CAK CAJ H15 110.5 110.6
CAK CAM CAN 112.6 110.4
CAK CAM OAP 108.0 104.8
CAM CAK H16 108.6 110.5
CAK CAM H18 108.5 110.3
NAI CAJ CAQ 106.7 110.5
CAJ NAI H14 118.1 120.0
NAI CAJ H15 111.4 110.5
CAJ CAQ OAP 107.7 104.8
CAJ CAQ N9 112.9 110.4
CAQ CAJ H15 110.5 110.5
CAJ CAQ H22 108.6 110.3
CAN CAM OAP 109.4 110.4
CAM CAN OAO 109.5 109.5
CAN CAM H18 108.5 110.3
CAM CAN H19 109.5 109.5
CAM CAN H20 109.5 109.5
OAP CAM H18 109.8 110.5
OAO CAN H19 109.5 109.4
OAO CAN H20 109.5 109.5
CAN OAO H21 109.5 114.0
CAQ N9 C4 124.1 126.3
N9 CAQ H22 109.1 110.5
C8 N9 C4 108.7 107.5
C8 N7 C5 107.8 109.4
N7 C8 H23 124.5 125.0
N9 C4 C5 106.1 106.0
N9 C4 N3 133.9 134.9
N7 C5 C6 134.8 134.7
C4 C5 C6 118.6 118.1
C4 N3 C2 123.1 120.7
C5 C6 N6 119.8 120.8
C5 C6 N1 119.3 118.5
N3 C2 H26 122.4 118.8
N6 C6 N1 120.9 120.7
C6 N6 H24 109.5 120.0
C6 N6 H25 109.5 120.0
H2 CB H3 109.5 109.5
H5 CD1 H6 109.4 109.5
H5 CD1 H7 109.5 109.4
H6 CD1 H7 109.5 109.5
H8 CD2 H9 109.5 109.5
H8 CD2 H10 109.5 109.5
H9 CD2 H10 109.5 109.5
H11 N H12 109.5 111.0
H19 CAN H20 109.4 109.5
H24 N6 H25 109.4 120.0

Torsion Angles for 9YN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CD2 CG1 CB H2 290.9 175.1
CD2 CG1 CB H3 50.0 55.0
CD1 CG1 CD2 H4 118.1 240.0
CD2 CG1 CD1 H5 180.0 299.9
CD2 CG1 CD1 H6 300.0 60.0
CD2 CG1 CD1 H7 60.0 180.0
CG1 CB CA N 228.6 295.0
CG1 CB CA H1 347.3 55.0
H2 CB CG1 H3 240.9 120.0
CD2 CG1 CD1 H4 241.9 119.9
CD1 CG1 CB H2 57.3 55.0
CD1 CG1 CB H3 176.4 295.0
H5 CD1 CG1 H6 240.0 240.0
H5 CD1 CG1 H7 120.0 119.9
H6 CD1 CG1 H7 240.0 240.0
N CA CB H1 241.3 240.0
CB CA N H11 180.0 300.0
CB CA N H12 300.0 64.0
CB CA C NAI 237.4 280.3
CA C O NAI 178.9 180.3
O C NAI CAJ 0.1 0.0
O C NAI H14 180.0 180.0
CB CA N H1 118.3 120.0
N CA C NAI 116.3 160.3
H11 N CA H12 240.0 236.1
O C CA NAI 181.0 179.7
CA C NAI CAJ 181.1 179.7
CA C NAI H14 1.1 359.7
OAL CAK CAJ CAQ 126.4 118.6
OAL CAK CAJ H15 246.1 237.3
OAL CAK CAM CAN 112.0 98.5
OAL CAK CAM OAP 232.9 217.4
CAM CAK OAL H16 240.4 237.4
OAL CAK CAM H18 351.9 336.3
C NAI CAJ CAQ 144.6 155.0
CAJ NAI C H14 180.0 180.0
C NAI CAJ H15 24.0 32.4
NAI CAJ CAK CAQ 244.2 241.3
CAK CAJ NAI H14 80.0 89.7
NAI CAJ CAK H15 124.5 122.7
CAK CAJ CAQ OAP 355.1 24.0
CAK CAJ CAQ N9 114.9 142.8
CAQ CAJ CAK H15 240.3 241.3
CAK CAJ CAQ H22 236.0 265.1
OAL CAK CAM H16 120.4 122.6
CAM CAK CAJ CAQ 5.3 0.0
CAM CAK CAJ H15 125.0 118.7
CAN CAM CAK OAP 239.1 241.1
CAK CAM CAN OAO 198.4 185.0
CAN CAM CAK H18 120.1 122.2
CAK CAM CAN H19 318.4 305.0
CAK CAM CAN H20 78.4 65.0
OAP CAM CAK H18 241.1 241.1
C NAI CAJ H14 180.0 180.0
CAK CAJ NAI CAQ 115.4 114.7
CAK CAJ NAI H15 236.0 237.2
NAI CAJ CAQ OAP 114.0 142.7
NAI CAJ CAQ N9 233.8 261.5
CAQ CAJ NAI H15 120.6 122.6
NAI CAJ CAQ H22 355.0 23.8
CAK CAJ CAQ H15 119.8 118.8
CAQ CAJ NAI H14 324.6 335.0
NAI CAJ CAQ H15 238.8 237.5
CAJ CAQ N9 C4 142.6 85.0
N9 CAQ CAJ H22 238.8 237.6
CAK CAM CAN OAP 120.1 115.4
CAN CAM CAK H16 351.7 335.9
CAK CAM CAN H18 239.9 237.8
OAP CAM CAN H18 119.8 122.4
OAO CAN CAM H19 240.0 240.0
OAO CAN CAM H20 120.0 120.0
CAM CAN OAO H21 180.0 180.0
H19 CAN CAM H20 240.0 240.0
CAK CAM OAP CAN 237.1 241.2
OAP CAM CAK H16 112.6 94.8
CAK CAM OAP H18 118.1 118.8
CAJ CAQ OAP CAM 2.6 319.5
OAP CAM CAN OAO 78.3 69.6
CAN CAM OAP H18 241.0 237.7
OAP CAM CAN H19 198.4 189.6
OAP CAM CAN H20 318.3 309.6
OAO CAN CAM OAP 78.3 69.6
OAO CAN CAM H18 318.5 307.2
CAM CAN OAO H19 120.0 120.0
CAM CAN OAO H20 240.0 240.0
H19 CAN OAO H20 120.0 120.0
CAJ CAQ OAP N9 122.5 118.8
OAP CAQ CAJ H15 235.3 265.2
CAJ CAQ OAP H22 241.8 241.2
CAQ OAP CAM H18 242.7 281.7
CAJ CAQ N9 OAP 240.7 244.7
N9 CAQ CAJ H15 355.1 24.0
CAJ CAQ N9 H22 120.9 122.3
C8 N9 CAQ C4 179.1 180.3
CAQ N9 C4 C5 179.6 179.9
CAQ N9 C4 N3 359.1 360.0
CAQ N9 C8 C4 180.8 179.8
C8 N9 CAQ H22 200.8 143.0
C8 N9 C4 C5 0.4 359.6
C8 N9 C4 N3 179.9 179.7
N7 C8 N9 C4 359.3 0.3
C8 N7 C5 C6 180.2 180.0
C4 N9 CAQ H22 21.7 322.8
N9 C4 C5 C6 179.6 180.2
N9 C4 N3 C2 180.4 179.2
C5 N7 C8 H23 180.8 180.0
N9 C4 C5 N7 0.1 0.3
C4 C5 N7 C6 179.4 179.8
N7 C5 C6 N6 359.4 0.0
N7 C5 C6 N1 179.5 180.0
N9 C4 C5 N3 179.6 180.1
N7 C5 C4 C6 180.5 180.2
C4 C5 C6 N6 180.1 180.3
C4 C5 C6 N1 0.2 0.3
N9 C4 N3 C5 180.5 179.9
N3 C4 C5 C6 359.9 0.1
C4 N3 C2 H26 180.1 180.4
N6 C6 C5 N1 179.8 180.0
C5 C6 N6 H24 180.2 360.0
C5 C6 N6 H25 300.2 180.0
C5 C6 N6 N1 180.2 180.0
H24 N6 C6 H25 240.0 180.0
C5 C6 N1 N6 179.8 180.0
N1 C6 N6 H24 0.0 180.0
N1 C6 N6 H25 120.0 0.0
C4 N3 C2 N1 0.1 1.0
CB CA H1 N 241.3 240.0
H1 CA N H11 61.7 180.1
H1 CA N H12 181.7 304.0
H1 CA C NAI 357.2 40.3
CG1 CB H2 H3 118.7 240.0
H2 CB CA N 108.2 54.9
H2 CB CA H1 226.9 174.9
CG1 CB H3 H2 241.3 119.9
H3 CB CA N 349.0 175.0
H3 CB CA H1 107.8 295.0
H4 CG1 CB H2 174.0 295.0
H4 CG1 CB H3 293.1 174.9
H4 CG1 CD1 H5 298.1 180.0
H4 CG1 CD1 H6 58.1 300.1
H4 CG1 CD1 H7 178.1 60.1
H5 CD1 CG1 H4 298.1 180.0
CG1 CD1 H5 H6 120.0 120.0
CG1 CD1 H5 H7 240.0 240.0
H6 CD1 H5 H7 120.0 120.0
H6 CD1 CG1 H4 58.1 300.1
CG1 CD1 H6 H5 240.0 240.0
CG1 CD1 H6 H7 120.0 120.0
H5 CD1 H6 H7 240.0 240.0
H7 CD1 CG1 H4 178.1 60.1
CG1 CD1 H7 H5 120.0 119.9
CG1 CD1 H7 H6 240.0 240.0
H5 CD1 H7 H6 120.0 120.0
H8 CD2 CG1 H4 297.0 300.0
H9 CD2 H8 H10 120.0 120.0
H9 CD2 CG1 H4 57.0 60.0
H8 CD2 H9 H10 240.0 240.0
H10 CD2 CG1 H4 177.0 180.0
H8 CD2 H10 H9 120.0 120.0
H11 N CA H1 61.7 180.1
CA N H11 H12 120.0 123.9
H12 N CA H1 181.7 304.0
CA N H12 H11 240.0 236.1
C NAI H14 CAJ 180.0 180.0
H14 NAI CAJ CAQ 324.6 335.0
H14 NAI CAJ H15 204.0 212.4
CAK CAJ H15 CAQ 243.0 245.3
NAI CAJ H15 CAQ 118.4 122.6
H15 CAJ NAI H14 204.0 212.4
H15 CAJ CAQ OAP 235.3 265.2
H15 CAJ CAQ N9 355.1 24.0
H15 CAJ CAQ H22 116.3 146.4
OAL CAK H16 CAM 239.4 237.4
H16 CAK CAJ CAQ 248.8 241.3
H16 CAK CAJ H15 8.6 0.0
H16 CAK CAM CAN 351.7 335.9
H16 CAK CAM OAP 112.6 94.8
H16 CAK CAM H18 231.5 213.7
H17 OAL CAK CAM 298.7 294.7
H17 OAL CAK H16 58.3 57.3
CAK CAM H18 CAN 122.7 122.2
CAK CAM H18 OAP 242.2 244.6
H18 CAM CAK H16 231.5 213.7
CAN CAM H18 OAP 119.6 122.4
H18 CAM CAN OAO 318.5 307.2
H18 CAM CAN H19 78.6 67.2
H18 CAM CAN H20 198.5 187.2
H19 CAN CAM OAP 198.4 189.6
CAM CAN H19 OAO 240.0 240.0
H19 CAN CAM H18 78.6 67.2
CAM CAN H19 H20 120.0 120.0
OAO CAN H19 H20 240.0 240.0
H19 CAN OAO H21 60.0 60.0
H20 CAN CAM OAP 318.3 309.6
CAM CAN H20 OAO 120.0 120.0
H20 CAN CAM H18 198.5 187.2
CAM CAN H20 H19 240.0 240.0
OAO CAN H20 H19 120.0 120.0
H20 CAN OAO H21 300.0 300.0
H21 OAO CAN H19 60.0 60.0
H21 OAO CAN H20 300.0 300.0
CAJ CAQ H22 OAP 117.6 115.3
CAJ CAQ H22 N9 236.5 237.7
H22 CAQ CAJ H15 116.3 146.4
H22 CAQ N9 C4 21.7 322.8
H23 C8 N9 C4 179.3 180.2
H23 C8 N7 C5 180.8 180.0
H24 N6 C6 N1 0.0 180.0
C6 N6 H24 H25 120.0 180.0
H25 N6 C6 N1 120.0 0.0
C6 N6 H25 H24 240.0 180.0