PDB Chemical Component 9YN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9YN
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CD2 |
CG1 |
1.532 |
1.530 |
CG1 |
CB |
1.530 |
1.530 |
CG1 |
CD1 |
1.527 |
1.530 |
CB |
CA |
1.534 |
1.530 |
O |
C |
1.224 |
1.213 |
CA |
N |
1.477 |
1.469 |
CA |
C |
1.507 |
1.507 |
OAL |
CAK |
1.432 |
1.429 |
C |
NAI |
1.336 |
1.348 |
CAK |
CAJ |
1.525 |
1.544 |
CAK |
CAM |
1.525 |
1.545 |
NAI |
CAJ |
1.463 |
1.465 |
CAJ |
CAQ |
1.530 |
1.545 |
CAM |
CAN |
1.525 |
1.529 |
CAM |
OAP |
1.430 |
1.444 |
CAN |
OAO |
1.431 |
1.429 |
CAQ |
OAP |
1.430 |
1.444 |
CAQ |
N9 |
1.488 |
1.465 |
C8 |
N9 |
1.351 |
1.363 |
C8 |
N7 |
1.354 |
1.302 |
N9 |
C4 |
1.335 |
1.372 |
N7 |
C5 |
1.344 |
1.354 |
C4 |
C5 |
1.475 |
1.405 |
C4 |
N3 |
1.360 |
1.329 |
C5 |
C6 |
1.483 |
1.406 |
N3 |
C2 |
1.475 |
1.316 |
C6 |
N6 |
1.353 |
1.383 |
C6 |
N1 |
1.356 |
1.329 |
C2 |
N1 |
1.476 |
1.321 |
CA |
H1 |
1.100 |
1.090 |
CB |
H2 |
1.100 |
1.091 |
CB |
H3 |
1.100 |
1.089 |
CG1 |
H4 |
1.100 |
1.090 |
CD1 |
H5 |
1.100 |
1.091 |
CD1 |
H6 |
1.100 |
1.090 |
CD1 |
H7 |
1.100 |
1.090 |
CD2 |
H8 |
1.100 |
1.089 |
CD2 |
H9 |
1.100 |
1.090 |
CD2 |
H10 |
1.100 |
1.091 |
N |
H11 |
1.000 |
1.009 |
N |
H12 |
1.000 |
1.009 |
NAI |
H14 |
1.000 |
0.970 |
CAJ |
H15 |
1.100 |
1.090 |
CAK |
H16 |
1.100 |
1.090 |
OAL |
H17 |
0.950 |
0.967 |
CAM |
H18 |
1.100 |
1.090 |
CAN |
H19 |
1.100 |
1.090 |
CAN |
H20 |
1.100 |
1.090 |
OAO |
H21 |
0.950 |
0.967 |
CAQ |
H22 |
1.100 |
1.090 |
C8 |
H23 |
1.080 |
1.081 |
N6 |
H24 |
1.000 |
0.971 |
N6 |
H25 |
1.000 |
0.970 |
C2 |
H26 |
1.080 |
1.079 |
Bond Angles for 9YN
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CD2 |
CG1 |
H4 |
107.3 |
109.4 |
CG1 |
CB |
H2 |
108.8 |
109.4 |
CG1 |
CB |
H3 |
108.8 |
109.5 |
CD1 |
CG1 |
H4 |
107.3 |
109.5 |
CG1 |
CD1 |
H5 |
109.5 |
109.4 |
CG1 |
CD1 |
H6 |
109.5 |
109.5 |
CG1 |
CD1 |
H7 |
109.4 |
109.5 |
CB |
CA |
N |
109.1 |
109.5 |
CB |
CA |
H1 |
108.4 |
109.4 |
O |
C |
NAI |
124.3 |
120.0 |
N |
CA |
H1 |
109.1 |
109.5 |
CA |
N |
H11 |
109.5 |
111.0 |
CA |
N |
H12 |
109.4 |
111.0 |
CA |
C |
NAI |
115.6 |
120.0 |
OAL |
CAK |
CAM |
110.2 |
110.5 |
OAL |
CAK |
H16 |
109.9 |
110.5 |
C |
NAI |
CAJ |
123.8 |
120.0 |
C |
NAI |
H14 |
118.1 |
120.0 |
CAK |
CAJ |
CAQ |
106.0 |
104.1 |
CAK |
CAJ |
H15 |
110.5 |
110.6 |
CAK |
CAM |
CAN |
112.6 |
110.4 |
CAK |
CAM |
OAP |
108.0 |
104.8 |
CAM |
CAK |
H16 |
108.6 |
110.5 |
CAK |
CAM |
H18 |
108.5 |
110.3 |
NAI |
CAJ |
CAQ |
106.7 |
110.5 |
CAJ |
NAI |
H14 |
118.1 |
120.0 |
NAI |
CAJ |
H15 |
111.4 |
110.5 |
CAJ |
CAQ |
OAP |
107.7 |
104.8 |
CAJ |
CAQ |
N9 |
112.9 |
110.4 |
CAQ |
CAJ |
H15 |
110.5 |
110.5 |
CAJ |
CAQ |
H22 |
108.6 |
110.3 |
CAN |
CAM |
OAP |
109.4 |
110.4 |
CAM |
CAN |
OAO |
109.5 |
109.5 |
CAN |
CAM |
H18 |
108.5 |
110.3 |
CAM |
CAN |
H19 |
109.5 |
109.5 |
CAM |
CAN |
H20 |
109.5 |
109.5 |
OAP |
CAM |
H18 |
109.8 |
110.5 |
OAO |
CAN |
H19 |
109.5 |
109.4 |
OAO |
CAN |
H20 |
109.5 |
109.5 |
CAN |
OAO |
H21 |
109.5 |
114.0 |
CAQ |
N9 |
C4 |
124.1 |
126.3 |
N9 |
CAQ |
H22 |
109.1 |
110.5 |
C8 |
N9 |
C4 |
108.7 |
107.5 |
C8 |
N7 |
C5 |
107.8 |
109.4 |
N7 |
C8 |
H23 |
124.5 |
125.0 |
N9 |
C4 |
C5 |
106.1 |
106.0 |
N9 |
C4 |
N3 |
133.9 |
134.9 |
N7 |
C5 |
C6 |
134.8 |
134.7 |
C4 |
C5 |
C6 |
118.6 |
118.1 |
C4 |
N3 |
C2 |
123.1 |
120.7 |
C5 |
C6 |
N6 |
119.8 |
120.8 |
C5 |
C6 |
N1 |
119.3 |
118.5 |
N3 |
C2 |
H26 |
122.4 |
118.8 |
N6 |
C6 |
N1 |
120.9 |
120.7 |
C6 |
N6 |
H24 |
109.5 |
120.0 |
C6 |
N6 |
H25 |
109.5 |
120.0 |
H2 |
CB |
H3 |
109.5 |
109.5 |
H5 |
CD1 |
H6 |
109.4 |
109.5 |
H5 |
CD1 |
H7 |
109.5 |
109.4 |
H6 |
CD1 |
H7 |
109.5 |
109.5 |
H8 |
CD2 |
H9 |
109.5 |
109.5 |
H8 |
CD2 |
H10 |
109.5 |
109.5 |
H9 |
CD2 |
H10 |
109.5 |
109.5 |
H11 |
N |
H12 |
109.5 |
111.0 |
H19 |
CAN |
H20 |
109.4 |
109.5 |
H24 |
N6 |
H25 |
109.4 |
120.0 |
Torsion Angles for 9YN
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CD2 |
CG1 |
CB |
H2 |
290.9 |
175.1 |
CD2 |
CG1 |
CB |
H3 |
50.0 |
55.0 |
CD1 |
CG1 |
CD2 |
H4 |
118.1 |
240.0 |
CD2 |
CG1 |
CD1 |
H5 |
180.0 |
299.9 |
CD2 |
CG1 |
CD1 |
H6 |
300.0 |
60.0 |
CD2 |
CG1 |
CD1 |
H7 |
60.0 |
180.0 |
CG1 |
CB |
CA |
N |
228.6 |
295.0 |
CG1 |
CB |
CA |
H1 |
347.3 |
55.0 |
H2 |
CB |
CG1 |
H3 |
240.9 |
120.0 |
CD2 |
CG1 |
CD1 |
H4 |
241.9 |
119.9 |
CD1 |
CG1 |
CB |
H2 |
57.3 |
55.0 |
CD1 |
CG1 |
CB |
H3 |
176.4 |
295.0 |
H5 |
CD1 |
CG1 |
H6 |
240.0 |
240.0 |
H5 |
CD1 |
CG1 |
H7 |
120.0 |
119.9 |
H6 |
CD1 |
CG1 |
H7 |
240.0 |
240.0 |
N |
CA |
CB |
H1 |
241.3 |
240.0 |
CB |
CA |
N |
H11 |
180.0 |
300.0 |
CB |
CA |
N |
H12 |
300.0 |
64.0 |
CB |
CA |
C |
NAI |
237.4 |
280.3 |
CA |
C |
O |
NAI |
178.9 |
180.3 |
O |
C |
NAI |
CAJ |
0.1 |
0.0 |
O |
C |
NAI |
H14 |
180.0 |
180.0 |
CB |
CA |
N |
H1 |
118.3 |
120.0 |
N |
CA |
C |
NAI |
116.3 |
160.3 |
H11 |
N |
CA |
H12 |
240.0 |
236.1 |
O |
C |
CA |
NAI |
181.0 |
179.7 |
CA |
C |
NAI |
CAJ |
181.1 |
179.7 |
CA |
C |
NAI |
H14 |
1.1 |
359.7 |
OAL |
CAK |
CAJ |
CAQ |
126.4 |
118.6 |
OAL |
CAK |
CAJ |
H15 |
246.1 |
237.3 |
OAL |
CAK |
CAM |
CAN |
112.0 |
98.5 |
OAL |
CAK |
CAM |
OAP |
232.9 |
217.4 |
CAM |
CAK |
OAL |
H16 |
240.4 |
237.4 |
OAL |
CAK |
CAM |
H18 |
351.9 |
336.3 |
C |
NAI |
CAJ |
CAQ |
144.6 |
155.0 |
CAJ |
NAI |
C |
H14 |
180.0 |
180.0 |
C |
NAI |
CAJ |
H15 |
24.0 |
32.4 |
NAI |
CAJ |
CAK |
CAQ |
244.2 |
241.3 |
CAK |
CAJ |
NAI |
H14 |
80.0 |
89.7 |
NAI |
CAJ |
CAK |
H15 |
124.5 |
122.7 |
CAK |
CAJ |
CAQ |
OAP |
355.1 |
24.0 |
CAK |
CAJ |
CAQ |
N9 |
114.9 |
142.8 |
CAQ |
CAJ |
CAK |
H15 |
240.3 |
241.3 |
CAK |
CAJ |
CAQ |
H22 |
236.0 |
265.1 |
OAL |
CAK |
CAM |
H16 |
120.4 |
122.6 |
CAM |
CAK |
CAJ |
CAQ |
5.3 |
0.0 |
CAM |
CAK |
CAJ |
H15 |
125.0 |
118.7 |
CAN |
CAM |
CAK |
OAP |
239.1 |
241.1 |
CAK |
CAM |
CAN |
OAO |
198.4 |
185.0 |
CAN |
CAM |
CAK |
H18 |
120.1 |
122.2 |
CAK |
CAM |
CAN |
H19 |
318.4 |
305.0 |
CAK |
CAM |
CAN |
H20 |
78.4 |
65.0 |
OAP |
CAM |
CAK |
H18 |
241.1 |
241.1 |
C |
NAI |
CAJ |
H14 |
180.0 |
180.0 |
CAK |
CAJ |
NAI |
CAQ |
115.4 |
114.7 |
CAK |
CAJ |
NAI |
H15 |
236.0 |
237.2 |
NAI |
CAJ |
CAQ |
OAP |
114.0 |
142.7 |
NAI |
CAJ |
CAQ |
N9 |
233.8 |
261.5 |
CAQ |
CAJ |
NAI |
H15 |
120.6 |
122.6 |
NAI |
CAJ |
CAQ |
H22 |
355.0 |
23.8 |
CAK |
CAJ |
CAQ |
H15 |
119.8 |
118.8 |
CAQ |
CAJ |
NAI |
H14 |
324.6 |
335.0 |
NAI |
CAJ |
CAQ |
H15 |
238.8 |
237.5 |
CAJ |
CAQ |
N9 |
C4 |
142.6 |
85.0 |
N9 |
CAQ |
CAJ |
H22 |
238.8 |
237.6 |
CAK |
CAM |
CAN |
OAP |
120.1 |
115.4 |
CAN |
CAM |
CAK |
H16 |
351.7 |
335.9 |
CAK |
CAM |
CAN |
H18 |
239.9 |
237.8 |
OAP |
CAM |
CAN |
H18 |
119.8 |
122.4 |
OAO |
CAN |
CAM |
H19 |
240.0 |
240.0 |
OAO |
CAN |
CAM |
H20 |
120.0 |
120.0 |
CAM |
CAN |
OAO |
H21 |
180.0 |
180.0 |
H19 |
CAN |
CAM |
H20 |
240.0 |
240.0 |
CAK |
CAM |
OAP |
CAN |
237.1 |
241.2 |
OAP |
CAM |
CAK |
H16 |
112.6 |
94.8 |
CAK |
CAM |
OAP |
H18 |
118.1 |
118.8 |
CAJ |
CAQ |
OAP |
CAM |
2.6 |
319.5 |
OAP |
CAM |
CAN |
OAO |
78.3 |
69.6 |
CAN |
CAM |
OAP |
H18 |
241.0 |
237.7 |
OAP |
CAM |
CAN |
H19 |
198.4 |
189.6 |
OAP |
CAM |
CAN |
H20 |
318.3 |
309.6 |
OAO |
CAN |
CAM |
OAP |
78.3 |
69.6 |
OAO |
CAN |
CAM |
H18 |
318.5 |
307.2 |
CAM |
CAN |
OAO |
H19 |
120.0 |
120.0 |
CAM |
CAN |
OAO |
H20 |
240.0 |
240.0 |
H19 |
CAN |
OAO |
H20 |
120.0 |
120.0 |
CAJ |
CAQ |
OAP |
N9 |
122.5 |
118.8 |
OAP |
CAQ |
CAJ |
H15 |
235.3 |
265.2 |
CAJ |
CAQ |
OAP |
H22 |
241.8 |
241.2 |
CAQ |
OAP |
CAM |
H18 |
242.7 |
281.7 |
CAJ |
CAQ |
N9 |
OAP |
240.7 |
244.7 |
N9 |
CAQ |
CAJ |
H15 |
355.1 |
24.0 |
CAJ |
CAQ |
N9 |
H22 |
120.9 |
122.3 |
C8 |
N9 |
CAQ |
C4 |
179.1 |
180.3 |
CAQ |
N9 |
C4 |
C5 |
179.6 |
179.9 |
CAQ |
N9 |
C4 |
N3 |
359.1 |
360.0 |
CAQ |
N9 |
C8 |
C4 |
180.8 |
179.8 |
C8 |
N9 |
CAQ |
H22 |
200.8 |
143.0 |
C8 |
N9 |
C4 |
C5 |
0.4 |
359.6 |
C8 |
N9 |
C4 |
N3 |
179.9 |
179.7 |
N7 |
C8 |
N9 |
C4 |
359.3 |
0.3 |
C8 |
N7 |
C5 |
C6 |
180.2 |
180.0 |
C4 |
N9 |
CAQ |
H22 |
21.7 |
322.8 |
N9 |
C4 |
C5 |
C6 |
179.6 |
180.2 |
N9 |
C4 |
N3 |
C2 |
180.4 |
179.2 |
C5 |
N7 |
C8 |
H23 |
180.8 |
180.0 |
N9 |
C4 |
C5 |
N7 |
0.1 |
0.3 |
C4 |
C5 |
N7 |
C6 |
179.4 |
179.8 |
N7 |
C5 |
C6 |
N6 |
359.4 |
0.0 |
N7 |
C5 |
C6 |
N1 |
179.5 |
180.0 |
N9 |
C4 |
C5 |
N3 |
179.6 |
180.1 |
N7 |
C5 |
C4 |
C6 |
180.5 |
180.2 |
C4 |
C5 |
C6 |
N6 |
180.1 |
180.3 |
C4 |
C5 |
C6 |
N1 |
0.2 |
0.3 |
N9 |
C4 |
N3 |
C5 |
180.5 |
179.9 |
N3 |
C4 |
C5 |
C6 |
359.9 |
0.1 |
C4 |
N3 |
C2 |
H26 |
180.1 |
180.4 |
N6 |
C6 |
C5 |
N1 |
179.8 |
180.0 |
C5 |
C6 |
N6 |
H24 |
180.2 |
360.0 |
C5 |
C6 |
N6 |
H25 |
300.2 |
180.0 |
C5 |
C6 |
N6 |
N1 |
180.2 |
180.0 |
H24 |
N6 |
C6 |
H25 |
240.0 |
180.0 |
C5 |
C6 |
N1 |
N6 |
179.8 |
180.0 |
N1 |
C6 |
N6 |
H24 |
0.0 |
180.0 |
N1 |
C6 |
N6 |
H25 |
120.0 |
0.0 |
C4 |
N3 |
C2 |
N1 |
0.1 |
1.0 |
CB |
CA |
H1 |
N |
241.3 |
240.0 |
H1 |
CA |
N |
H11 |
61.7 |
180.1 |
H1 |
CA |
N |
H12 |
181.7 |
304.0 |
H1 |
CA |
C |
NAI |
357.2 |
40.3 |
CG1 |
CB |
H2 |
H3 |
118.7 |
240.0 |
H2 |
CB |
CA |
N |
108.2 |
54.9 |
H2 |
CB |
CA |
H1 |
226.9 |
174.9 |
CG1 |
CB |
H3 |
H2 |
241.3 |
119.9 |
H3 |
CB |
CA |
N |
349.0 |
175.0 |
H3 |
CB |
CA |
H1 |
107.8 |
295.0 |
H4 |
CG1 |
CB |
H2 |
174.0 |
295.0 |
H4 |
CG1 |
CB |
H3 |
293.1 |
174.9 |
H4 |
CG1 |
CD1 |
H5 |
298.1 |
180.0 |
H4 |
CG1 |
CD1 |
H6 |
58.1 |
300.1 |
H4 |
CG1 |
CD1 |
H7 |
178.1 |
60.1 |
H5 |
CD1 |
CG1 |
H4 |
298.1 |
180.0 |
CG1 |
CD1 |
H5 |
H6 |
120.0 |
120.0 |
CG1 |
CD1 |
H5 |
H7 |
240.0 |
240.0 |
H6 |
CD1 |
H5 |
H7 |
120.0 |
120.0 |
H6 |
CD1 |
CG1 |
H4 |
58.1 |
300.1 |
CG1 |
CD1 |
H6 |
H5 |
240.0 |
240.0 |
CG1 |
CD1 |
H6 |
H7 |
120.0 |
120.0 |
H5 |
CD1 |
H6 |
H7 |
240.0 |
240.0 |
H7 |
CD1 |
CG1 |
H4 |
178.1 |
60.1 |
CG1 |
CD1 |
H7 |
H5 |
120.0 |
119.9 |
CG1 |
CD1 |
H7 |
H6 |
240.0 |
240.0 |
H5 |
CD1 |
H7 |
H6 |
120.0 |
120.0 |
H8 |
CD2 |
CG1 |
H4 |
297.0 |
300.0 |
H9 |
CD2 |
H8 |
H10 |
120.0 |
120.0 |
H9 |
CD2 |
CG1 |
H4 |
57.0 |
60.0 |
H8 |
CD2 |
H9 |
H10 |
240.0 |
240.0 |
H10 |
CD2 |
CG1 |
H4 |
177.0 |
180.0 |
H8 |
CD2 |
H10 |
H9 |
120.0 |
120.0 |
H11 |
N |
CA |
H1 |
61.7 |
180.1 |
CA |
N |
H11 |
H12 |
120.0 |
123.9 |
H12 |
N |
CA |
H1 |
181.7 |
304.0 |
CA |
N |
H12 |
H11 |
240.0 |
236.1 |
C |
NAI |
H14 |
CAJ |
180.0 |
180.0 |
H14 |
NAI |
CAJ |
CAQ |
324.6 |
335.0 |
H14 |
NAI |
CAJ |
H15 |
204.0 |
212.4 |
CAK |
CAJ |
H15 |
CAQ |
243.0 |
245.3 |
NAI |
CAJ |
H15 |
CAQ |
118.4 |
122.6 |
H15 |
CAJ |
NAI |
H14 |
204.0 |
212.4 |
H15 |
CAJ |
CAQ |
OAP |
235.3 |
265.2 |
H15 |
CAJ |
CAQ |
N9 |
355.1 |
24.0 |
H15 |
CAJ |
CAQ |
H22 |
116.3 |
146.4 |
OAL |
CAK |
H16 |
CAM |
239.4 |
237.4 |
H16 |
CAK |
CAJ |
CAQ |
248.8 |
241.3 |
H16 |
CAK |
CAJ |
H15 |
8.6 |
0.0 |
H16 |
CAK |
CAM |
CAN |
351.7 |
335.9 |
H16 |
CAK |
CAM |
OAP |
112.6 |
94.8 |
H16 |
CAK |
CAM |
H18 |
231.5 |
213.7 |
H17 |
OAL |
CAK |
CAM |
298.7 |
294.7 |
H17 |
OAL |
CAK |
H16 |
58.3 |
57.3 |
CAK |
CAM |
H18 |
CAN |
122.7 |
122.2 |
CAK |
CAM |
H18 |
OAP |
242.2 |
244.6 |
H18 |
CAM |
CAK |
H16 |
231.5 |
213.7 |
CAN |
CAM |
H18 |
OAP |
119.6 |
122.4 |
H18 |
CAM |
CAN |
OAO |
318.5 |
307.2 |
H18 |
CAM |
CAN |
H19 |
78.6 |
67.2 |
H18 |
CAM |
CAN |
H20 |
198.5 |
187.2 |
H19 |
CAN |
CAM |
OAP |
198.4 |
189.6 |
CAM |
CAN |
H19 |
OAO |
240.0 |
240.0 |
H19 |
CAN |
CAM |
H18 |
78.6 |
67.2 |
CAM |
CAN |
H19 |
H20 |
120.0 |
120.0 |
OAO |
CAN |
H19 |
H20 |
240.0 |
240.0 |
H19 |
CAN |
OAO |
H21 |
60.0 |
60.0 |
H20 |
CAN |
CAM |
OAP |
318.3 |
309.6 |
CAM |
CAN |
H20 |
OAO |
120.0 |
120.0 |
H20 |
CAN |
CAM |
H18 |
198.5 |
187.2 |
CAM |
CAN |
H20 |
H19 |
240.0 |
240.0 |
OAO |
CAN |
H20 |
H19 |
120.0 |
120.0 |
H20 |
CAN |
OAO |
H21 |
300.0 |
300.0 |
H21 |
OAO |
CAN |
H19 |
60.0 |
60.0 |
H21 |
OAO |
CAN |
H20 |
300.0 |
300.0 |
CAJ |
CAQ |
H22 |
OAP |
117.6 |
115.3 |
CAJ |
CAQ |
H22 |
N9 |
236.5 |
237.7 |
H22 |
CAQ |
CAJ |
H15 |
116.3 |
146.4 |
H22 |
CAQ |
N9 |
C4 |
21.7 |
322.8 |
H23 |
C8 |
N9 |
C4 |
179.3 |
180.2 |
H23 |
C8 |
N7 |
C5 |
180.8 |
180.0 |
H24 |
N6 |
C6 |
N1 |
0.0 |
180.0 |
C6 |
N6 |
H24 |
H25 |
120.0 |
180.0 |
H25 |
N6 |
C6 |
N1 |
120.0 |
0.0 |
C6 |
N6 |
H25 |
H24 |
240.0 |
180.0 |