PDB Chemical Component 9Y8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9Y8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAV |
CAW |
1.401 |
1.384 |
| CAV |
CAU |
1.388 |
1.384 |
| CAW |
CAR |
1.406 |
1.380 |
| CAU |
CAT |
1.399 |
1.376 |
| CAR |
CAS |
1.388 |
1.394 |
| CAT |
CAS |
1.375 |
1.400 |
| CAT |
SAQ |
1.732 |
1.765 |
| OAM |
SAQ |
1.475 |
1.421 |
| CAS |
CAN |
1.375 |
1.475 |
| SAQ |
OAL |
1.497 |
1.421 |
| SAQ |
NAP |
1.758 |
1.667 |
| CAN |
NAH |
1.280 |
1.363 |
| CAN |
CAO |
1.393 |
1.385 |
| NAH |
NAI |
1.419 |
1.403 |
| NAP |
CAO |
1.358 |
1.408 |
| NAP |
CAK |
1.458 |
1.465 |
| CAO |
CAJ |
1.363 |
1.401 |
| NAI |
CAJ |
1.331 |
1.319 |
| CAJ |
CAG |
1.366 |
1.485 |
| CAG |
CAF |
1.370 |
1.393 |
| CAG |
CAB |
1.386 |
1.394 |
| CAF |
CAE |
1.373 |
1.379 |
| CAB |
CAC |
1.376 |
1.380 |
| CAE |
CAD |
1.390 |
1.385 |
| CAC |
CAD |
1.381 |
1.385 |
| CAD |
FAA |
1.233 |
1.351 |
| CAK |
H1 |
1.100 |
1.091 |
| CAK |
H2 |
1.100 |
1.090 |
| CAK |
H3 |
1.100 |
1.090 |
| CAU |
H4 |
1.080 |
1.080 |
| CAV |
H5 |
1.080 |
1.079 |
| CAW |
H6 |
1.080 |
1.080 |
| CAR |
H7 |
1.080 |
1.079 |
| NAH |
H8 |
1.000 |
0.970 |
| CAB |
H9 |
1.080 |
1.080 |
| CAC |
H10 |
1.080 |
1.080 |
| CAE |
H11 |
1.080 |
1.081 |
| CAF |
H12 |
1.080 |
1.080 |
Bond Angles for 9Y8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAV |
CAW |
CAR |
120.3 |
120.3 |
| CAW |
CAV |
H5 |
120.7 |
119.8 |
| CAV |
CAW |
H6 |
119.9 |
119.8 |
| CAV |
CAU |
H4 |
120.2 |
120.0 |
| CAW |
CAR |
CAS |
120.8 |
119.7 |
| CAR |
CAW |
H6 |
119.8 |
119.9 |
| CAW |
CAR |
H7 |
119.6 |
120.2 |
| CAU |
CAT |
CAS |
122.4 |
120.0 |
| CAT |
CAS |
CAR |
118.0 |
119.7 |
| CAR |
CAS |
CAN |
121.9 |
121.0 |
| CAS |
CAR |
H7 |
119.6 |
120.1 |
| CAT |
CAS |
CAN |
120.0 |
119.3 |
| CAS |
CAN |
NAH |
126.5 |
128.4 |
| CAN |
NAH |
NAI |
112.8 |
108.0 |
| CAN |
NAH |
H8 |
123.6 |
126.0 |
| CAN |
CAO |
CAJ |
109.6 |
107.8 |
| NAH |
NAI |
CAJ |
104.5 |
108.9 |
| NAI |
NAH |
H8 |
123.6 |
126.0 |
| NAP |
CAO |
CAJ |
128.6 |
128.8 |
| NAP |
CAK |
H1 |
109.5 |
109.5 |
| NAP |
CAK |
H2 |
109.5 |
109.5 |
| NAP |
CAK |
H3 |
109.5 |
109.5 |
| CAO |
CAJ |
NAI |
108.2 |
108.2 |
| CAO |
CAJ |
CAG |
129.5 |
125.9 |
| NAI |
CAJ |
CAG |
122.2 |
125.9 |
| CAJ |
CAG |
CAF |
123.3 |
120.1 |
| CAJ |
CAG |
CAB |
119.1 |
120.1 |
| CAB |
CAG |
CAF |
117.5 |
119.8 |
| CAG |
CAF |
CAE |
122.7 |
119.9 |
| CAG |
CAF |
H12 |
118.7 |
120.0 |
| CAG |
CAB |
CAC |
121.8 |
119.9 |
| CAG |
CAB |
H9 |
119.1 |
120.0 |
| CAF |
CAE |
H11 |
120.7 |
119.9 |
| CAB |
CAC |
CAD |
119.1 |
120.1 |
| CAC |
CAB |
H9 |
119.1 |
120.1 |
| CAB |
CAC |
H10 |
120.5 |
119.9 |
| CAC |
CAD |
FAA |
120.3 |
119.9 |
| CAD |
CAC |
H10 |
120.4 |
120.0 |
| H1 |
CAK |
H2 |
109.5 |
109.4 |
| H1 |
CAK |
H3 |
109.5 |
109.5 |
| H2 |
CAK |
H3 |
109.4 |
109.5 |
Torsion Angles for 9Y8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAW |
CAV |
CAU |
H4 |
178.8 |
180.0 |
| CAV |
CAW |
CAR |
CAS |
359.2 |
0.1 |
| CAR |
CAW |
CAV |
H6 |
180.0 |
180.0 |
| CAV |
CAW |
CAR |
H7 |
179.2 |
180.0 |
| CAV |
CAU |
CAT |
CAS |
0.6 |
359.5 |
| CAR |
CAW |
CAV |
H5 |
181.2 |
180.3 |
| CAV |
CAW |
CAR |
H6 |
180.0 |
180.0 |
| CAT |
CAS |
CAR |
CAW |
0.2 |
359.4 |
| CAW |
CAR |
CAS |
CAN |
182.0 |
178.4 |
| CAS |
CAR |
CAW |
H7 |
180.0 |
180.1 |
| CAU |
CAT |
CAS |
CAR |
359.9 |
0.9 |
| CAU |
CAT |
CAS |
CAN |
178.1 |
181.8 |
| CAS |
CAR |
CAW |
H6 |
179.2 |
180.1 |
| CAW |
CAR |
CAS |
H7 |
180.0 |
179.9 |
| CAT |
CAS |
CAR |
CAN |
178.2 |
181.0 |
| CAR |
CAS |
CAN |
NAH |
343.3 |
14.9 |
| CAW |
CAR |
CAS |
CAT |
0.2 |
359.4 |
| CAR |
CAS |
CAT |
CAN |
181.8 |
179.0 |
| CAT |
CAS |
CAR |
H7 |
180.2 |
179.5 |
| CAT |
CAS |
CAN |
NAH |
165.1 |
194.0 |
| CAT |
CAS |
CAN |
CAR |
181.8 |
179.0 |
| CAN |
CAS |
CAR |
H7 |
2.0 |
358.5 |
| CAS |
CAN |
NAH |
NAI |
173.7 |
180.3 |
| CAS |
CAN |
NAH |
H8 |
353.7 |
0.4 |
| CAS |
CAN |
CAO |
CAJ |
184.9 |
179.0 |
| SAQ |
NAP |
CAO |
CAJ |
213.9 |
152.5 |
| SAQ |
NAP |
CAK |
H1 |
0.0 |
275.2 |
| SAQ |
NAP |
CAK |
H2 |
120.0 |
35.1 |
| SAQ |
NAP |
CAK |
H3 |
240.0 |
155.2 |
| NAH |
CAN |
CAO |
CAJ |
356.0 |
359.5 |
| CAN |
NAH |
NAI |
CAJ |
0.1 |
0.8 |
| NAI |
NAH |
CAN |
H8 |
180.0 |
179.9 |
| NAP |
CAO |
CAN |
CAJ |
186.3 |
179.9 |
| CAN |
CAO |
CAJ |
NAI |
4.2 |
1.0 |
| CAN |
CAO |
CAJ |
CAG |
181.7 |
180.2 |
| CAN |
NAH |
NAI |
H8 |
180.0 |
180.1 |
| CAO |
CAJ |
NAI |
NAH |
357.4 |
358.9 |
| NAH |
NAI |
CAJ |
CAG |
179.6 |
179.7 |
| CAN |
CAO |
NAP |
CAJ |
172.4 |
180.1 |
| CAO |
NAP |
CAK |
H1 |
133.3 |
95.5 |
| CAO |
NAP |
CAK |
H2 |
253.3 |
215.4 |
| CAO |
NAP |
CAK |
H3 |
13.3 |
335.5 |
| NAP |
CAO |
CAJ |
NAI |
177.3 |
181.1 |
| NAP |
CAO |
CAJ |
CAG |
354.8 |
0.3 |
| H1 |
CAK |
NAP |
H2 |
240.0 |
240.0 |
| H1 |
CAK |
NAP |
H3 |
120.0 |
120.0 |
| H2 |
CAK |
NAP |
H3 |
240.0 |
240.0 |
| NAH |
NAI |
CAJ |
CAO |
357.4 |
358.9 |
| NAI |
CAJ |
CAO |
CAG |
182.5 |
180.8 |
| CAO |
CAJ |
CAG |
CAF |
40.2 |
316.7 |
| CAO |
CAJ |
CAG |
CAB |
217.3 |
137.0 |
| CAJ |
NAI |
NAH |
H8 |
180.1 |
180.8 |
| CAO |
CAJ |
NAI |
CAG |
177.7 |
179.2 |
| NAI |
CAJ |
CAG |
CAF |
217.4 |
135.7 |
| NAI |
CAJ |
CAG |
CAB |
34.5 |
316.0 |
| CAO |
CAJ |
CAG |
NAI |
182.8 |
180.9 |
| CAB |
CAG |
CAJ |
CAF |
177.1 |
180.3 |
| CAJ |
CAG |
CAF |
CAE |
178.9 |
179.8 |
| CAJ |
CAG |
CAF |
H12 |
358.9 |
0.0 |
| CAJ |
CAG |
CAB |
CAC |
179.7 |
180.0 |
| CAJ |
CAG |
CAB |
H9 |
359.7 |
359.9 |
| CAJ |
CAG |
CAF |
CAB |
177.1 |
180.3 |
| CAF |
CAG |
CAB |
CAC |
357.0 |
0.3 |
| CAF |
CAG |
CAB |
H9 |
177.0 |
180.2 |
| CAG |
CAF |
CAE |
H11 |
179.7 |
180.2 |
| CAJ |
CAG |
CAB |
CAF |
182.7 |
179.7 |
| CAB |
CAG |
CAF |
CAE |
1.8 |
359.5 |
| CAB |
CAG |
CAF |
H12 |
181.7 |
179.7 |
| CAG |
CAB |
CAC |
CAD |
2.8 |
360.0 |
| CAC |
CAB |
CAG |
H9 |
180.0 |
180.1 |
| CAG |
CAB |
CAC |
H10 |
182.8 |
180.0 |
| CAG |
CAF |
CAE |
H12 |
180.0 |
180.2 |
| CAC |
CAB |
CAG |
CAF |
357.0 |
0.3 |
| CAG |
CAB |
CAC |
H9 |
180.0 |
179.9 |
| CAB |
CAC |
CAD |
FAA |
182.0 |
180.0 |
| CAD |
CAC |
CAB |
H10 |
180.0 |
180.0 |
| CAG |
CAF |
CAE |
CAD |
359.7 |
0.5 |
| CAE |
CAD |
CAC |
H10 |
178.8 |
180.0 |
| CAD |
CAC |
CAB |
H9 |
182.8 |
180.1 |
| CAB |
CAC |
CAD |
H10 |
180.0 |
180.0 |
| FAA |
CAD |
CAC |
H10 |
2.0 |
0.0 |
| NAP |
CAK |
H1 |
H2 |
120.0 |
120.0 |
| NAP |
CAK |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
CAK |
H1 |
H3 |
120.0 |
120.0 |
| NAP |
CAK |
H2 |
H1 |
239.9 |
240.0 |
| NAP |
CAK |
H2 |
H3 |
120.0 |
120.1 |
| H1 |
CAK |
H2 |
H3 |
240.0 |
240.0 |
| NAP |
CAK |
H3 |
H1 |
120.1 |
120.0 |
| NAP |
CAK |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
CAK |
H3 |
H2 |
120.0 |
119.9 |
| H4 |
CAU |
CAT |
CAS |
180.6 |
179.4 |
| H5 |
CAV |
CAW |
CAR |
181.2 |
180.3 |
| H5 |
CAV |
CAW |
H6 |
1.2 |
0.3 |
| H5 |
CAV |
CAU |
H4 |
358.8 |
359.9 |
| CAV |
CAW |
H6 |
CAR |
180.0 |
180.0 |
| H6 |
CAW |
CAV |
H5 |
1.2 |
0.3 |
| H6 |
CAW |
CAR |
CAS |
179.2 |
180.1 |
| H6 |
CAW |
CAR |
H7 |
359.3 |
359.9 |
| CAW |
CAR |
H7 |
CAS |
180.0 |
180.1 |
| H7 |
CAR |
CAW |
H6 |
359.3 |
359.9 |
| H7 |
CAR |
CAS |
CAN |
2.0 |
358.5 |
| CAN |
NAH |
H8 |
NAI |
180.0 |
179.9 |
| H8 |
NAH |
NAI |
CAJ |
180.1 |
180.8 |
| H9 |
CAB |
CAG |
CAF |
177.0 |
180.2 |
| CAG |
CAB |
H9 |
CAC |
180.0 |
180.1 |
| H9 |
CAB |
CAC |
CAD |
182.8 |
180.1 |
| H9 |
CAB |
CAC |
H10 |
2.8 |
0.1 |
| CAB |
CAC |
H10 |
CAD |
180.0 |
180.0 |
| H10 |
CAC |
CAB |
H9 |
2.8 |
0.1 |
| H10 |
CAC |
CAD |
FAA |
2.0 |
0.0 |
| CAG |
CAF |
H12 |
CAE |
180.0 |
179.8 |
| H12 |
CAF |
CAE |
H11 |
359.7 |
0.0 |