Atom Nomenclature for 9Y0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9Y0

Atom Name (V3) Atom Name (V2)
N N1
C C1
O O1
C1 C2
C10 C3
C11 C4
C12 C5
C13 C6
C14 C7
C15 C8
C16 C9
C17 C10
C18 C11
C19 C12
C2 C13
C20 C14
C21 C15
C22 C16
C23 C17
C24 C18
C25 C19
C26 C20
C27 C21
C28 C22
C29 C23
C3 C24
C30 C25
C31 C26
C32 C27
C33 C28
C34 C29
C35 C30
C36 C31
C37 C32
C38 C33
C4 C34
C5 C35
C6 C36
C7 C37
C8 C38
C9 C39
O1 O2
O2 O3
O3 O4
O4 O5
O5 O6
O6 O7
O7 O8
P P1
H1 H1
H2 H2
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H55 H55
H56 H56
H57 H57
H58 H58
H59 H59
H60 H60
H61 H61
H62 H62
H63 H63
H64 H64
H65 H65
H66 H66
H67 H67
H68 H68
H69 H69
H70 H70
H71 H71
H72 H72
H73 H73
H74 H74
H75 H75
H76 H76
H77 H77