Atom Nomenclature for 9WN

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9WN

Atom Name (V3) Atom Name (V2)
C10 C10
C6 C01
C5 C02
C4 C03
C3 C04
C2 C05
C1 C06
C09 C09
C12 C12
O5 O07
O1 O08
O11 O11
O13 O13
O14 O14
O2 O15
O3 O16
O4 O17
O6 O18
H1A H1
H2A H2
H61 H3
H62 H4
H5 H5
H4 H6
H3 H7
H2 H8
H1 H9
H10 H10
H11 H11
H12 H12
HO2 H13
HO3 H14
HO4 H15
HO6 H16