PDB Chemical Component 9WM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9WM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C11 |
C10 |
1.483 |
1.508 |
| O8 |
C8 |
1.416 |
1.429 |
| O9 |
C9 |
1.431 |
1.429 |
| N5 |
C10 |
1.334 |
1.348 |
| N5 |
C5 |
1.479 |
1.465 |
| C10 |
O10 |
1.228 |
1.213 |
| C8 |
C9 |
1.545 |
1.530 |
| C8 |
C7 |
1.537 |
1.530 |
| C7 |
C6 |
1.521 |
1.530 |
| C7 |
O7 |
1.430 |
1.429 |
| C6 |
C5 |
1.527 |
1.531 |
| C6 |
O6 |
1.460 |
1.439 |
| C4 |
C5 |
1.498 |
1.536 |
| C4 |
C3 |
1.529 |
1.532 |
| O6 |
C2 |
1.410 |
1.179 |
| C3 |
C2 |
1.511 |
1.500 |
| C3 |
F1 |
1.370 |
1.399 |
| C2 |
C1 |
1.350 |
1.490 |
| C1 |
O1A |
1.262 |
1.213 |
| C1 |
O1B |
1.273 |
1.345 |
| O1B |
H1 |
0.950 |
0.968 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.089 |
| C4 |
H5 |
1.100 |
1.090 |
| C6 |
H6 |
1.100 |
1.090 |
| C7 |
H7 |
1.100 |
1.090 |
| C8 |
H8 |
1.100 |
1.090 |
| C9 |
H9 |
1.100 |
1.089 |
| C9 |
H10 |
1.100 |
1.090 |
| O9 |
H11 |
0.950 |
0.967 |
| O7 |
H12 |
0.950 |
0.967 |
| C5 |
H13 |
1.100 |
1.090 |
| N5 |
H14 |
1.000 |
0.971 |
| C11 |
H15 |
1.100 |
1.089 |
| C11 |
H16 |
1.100 |
1.090 |
| C11 |
H17 |
1.100 |
1.090 |
| O8 |
H18 |
0.950 |
0.967 |
Bond Angles for 9WM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O8 |
C8 |
H8 |
108.7 |
109.5 |
| O9 |
C9 |
H9 |
108.8 |
109.5 |
| O9 |
C9 |
H10 |
108.8 |
109.4 |
| N5 |
C10 |
O10 |
124.0 |
120.0 |
| C10 |
N5 |
H14 |
118.9 |
120.0 |
| N5 |
C5 |
H13 |
112.5 |
109.8 |
| C9 |
C8 |
H8 |
107.1 |
109.5 |
| C8 |
C9 |
H9 |
108.8 |
109.5 |
| C8 |
C9 |
H10 |
108.8 |
109.5 |
| C8 |
C7 |
O7 |
107.8 |
109.5 |
| C8 |
C7 |
H7 |
109.1 |
109.5 |
| C7 |
C6 |
C5 |
111.0 |
109.2 |
| C7 |
C6 |
H6 |
107.8 |
109.1 |
| O7 |
C7 |
H7 |
110.6 |
109.5 |
| C7 |
O7 |
H12 |
109.5 |
114.0 |
| C4 |
C5 |
C6 |
106.0 |
108.0 |
| C5 |
C6 |
H6 |
107.8 |
109.1 |
| C6 |
C5 |
H13 |
111.8 |
109.9 |
| C5 |
C4 |
H4 |
109.2 |
109.9 |
| C5 |
C4 |
H5 |
109.2 |
109.8 |
| C4 |
C5 |
H13 |
112.2 |
109.7 |
| C4 |
C3 |
H3 |
107.6 |
109.4 |
| F1 |
C3 |
H3 |
109.7 |
109.4 |
| C1 |
O1B |
H1 |
109.5 |
117.0 |
| H4 |
C4 |
H5 |
109.5 |
109.9 |
| H9 |
C9 |
H10 |
109.5 |
109.5 |
| H15 |
C11 |
H16 |
109.4 |
109.5 |
| H15 |
C11 |
H17 |
109.5 |
109.5 |
| H16 |
C11 |
H17 |
109.5 |
109.5 |
Torsion Angles for 9WM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
N5 |
H14 |
0.1 |
360.0 |
| C9 |
C8 |
O8 |
H8 |
242.6 |
240.0 |
| O8 |
C8 |
C9 |
H9 |
178.7 |
185.0 |
| O8 |
C8 |
C9 |
H10 |
59.5 |
305.0 |
| O8 |
C8 |
C7 |
H7 |
58.1 |
60.0 |
| O9 |
C9 |
C8 |
H8 |
180.7 |
305.0 |
| C8 |
C9 |
O9 |
H9 |
239.6 |
120.0 |
| C8 |
C9 |
O9 |
H10 |
120.4 |
240.0 |
| H9 |
C9 |
O9 |
H10 |
240.8 |
120.0 |
| C10 |
N5 |
C5 |
H13 |
356.0 |
35.7 |
| N5 |
C5 |
C6 |
H6 |
52.0 |
48.6 |
| C6 |
C5 |
N5 |
H13 |
125.6 |
120.8 |
| N5 |
C5 |
C4 |
H4 |
305.2 |
57.8 |
| N5 |
C5 |
C4 |
H5 |
64.8 |
296.9 |
| C4 |
C5 |
N5 |
H13 |
238.6 |
239.3 |
| O10 |
C10 |
N5 |
H14 |
177.7 |
180.0 |
| O8 |
C8 |
C9 |
H8 |
118.4 |
120.0 |
| O9 |
C9 |
C8 |
H9 |
120.4 |
239.9 |
| O9 |
C9 |
C8 |
H10 |
239.6 |
119.9 |
| C9 |
C8 |
C7 |
O7 |
54.1 |
60.0 |
| C9 |
C8 |
C7 |
H7 |
294.0 |
300.0 |
| H9 |
C9 |
C8 |
H10 |
119.2 |
240.0 |
| C8 |
C7 |
C6 |
C5 |
180.5 |
185.0 |
| C8 |
C7 |
C6 |
H6 |
62.7 |
65.9 |
| O7 |
C7 |
C8 |
H7 |
120.1 |
120.0 |
| C8 |
C7 |
O7 |
H12 |
180.0 |
60.0 |
| C4 |
C5 |
C6 |
C7 |
182.7 |
169.8 |
| C5 |
C6 |
C7 |
H6 |
117.8 |
119.1 |
| C7 |
C6 |
C5 |
H13 |
60.2 |
50.2 |
| C8 |
C7 |
O7 |
H7 |
240.8 |
240.0 |
| O7 |
C7 |
C6 |
C5 |
299.1 |
305.0 |
| O7 |
C7 |
C6 |
H6 |
181.3 |
185.8 |
| N5 |
C5 |
C6 |
H13 |
234.0 |
239.3 |
| C7 |
C6 |
C5 |
H6 |
242.2 |
240.9 |
| C6 |
C5 |
C4 |
H4 |
61.3 |
177.4 |
| C6 |
C5 |
C4 |
H5 |
180.9 |
56.4 |
| C4 |
C5 |
C6 |
H13 |
122.6 |
119.7 |
| C4 |
C5 |
C6 |
O6 |
60.9 |
49.5 |
| N5 |
C5 |
C4 |
H13 |
121.6 |
120.7 |
| C7 |
C6 |
C5 |
C4 |
182.7 |
169.8 |
| C4 |
C5 |
C6 |
H6 |
300.6 |
289.0 |
| C6 |
C5 |
C4 |
H13 |
237.7 |
240.3 |
| C5 |
C4 |
C3 |
H3 |
163.1 |
165.1 |
| H4 |
C4 |
C5 |
H5 |
240.4 |
121.0 |
| F1 |
C3 |
C4 |
H3 |
116.9 |
119.9 |
| C4 |
C3 |
F1 |
H3 |
244.5 |
240.1 |
| C2 |
C1 |
O1B |
H1 |
182.1 |
180.0 |
| O1A |
C1 |
O1B |
H1 |
0.0 |
359.9 |
| H4 |
C4 |
C5 |
C6 |
61.3 |
177.4 |
| C5 |
C4 |
H4 |
H5 |
119.4 |
239.0 |
| H4 |
C4 |
C5 |
H13 |
183.6 |
297.1 |
| H4 |
C4 |
C3 |
H3 |
42.9 |
284.7 |
| H5 |
C4 |
C5 |
C6 |
180.9 |
56.4 |
| C5 |
C4 |
H5 |
H4 |
240.6 |
121.0 |
| H5 |
C4 |
C5 |
H13 |
303.2 |
176.1 |
| H5 |
C4 |
C3 |
H3 |
283.3 |
45.6 |
| C7 |
C6 |
H6 |
C5 |
119.8 |
119.2 |
| H6 |
C6 |
C5 |
H13 |
178.0 |
169.3 |
| C8 |
C7 |
H7 |
O7 |
118.4 |
120.0 |
| H7 |
C7 |
C6 |
C5 |
59.5 |
65.0 |
| H7 |
C7 |
C6 |
H6 |
301.7 |
305.9 |
| H7 |
C7 |
O7 |
H12 |
299.2 |
180.0 |
| H8 |
C8 |
C9 |
H9 |
60.2 |
65.0 |
| H8 |
C8 |
C9 |
H10 |
301.1 |
185.0 |
| H8 |
C8 |
C7 |
O7 |
295.2 |
300.0 |
| H8 |
C8 |
C7 |
H7 |
175.1 |
179.9 |
| O9 |
C9 |
H9 |
H10 |
118.7 |
240.0 |
| H9 |
C9 |
C8 |
H8 |
60.2 |
65.0 |
| C8 |
C9 |
H9 |
H10 |
241.3 |
120.0 |
| O9 |
C9 |
H10 |
H9 |
241.2 |
120.0 |
| H10 |
C9 |
C8 |
H8 |
301.1 |
185.0 |
| C8 |
C9 |
H10 |
H9 |
118.7 |
240.0 |
| H11 |
O9 |
C9 |
H9 |
300.4 |
59.9 |
| H11 |
O9 |
C9 |
H10 |
59.6 |
299.9 |
| H12 |
O7 |
C7 |
H7 |
299.2 |
180.0 |
| C4 |
C5 |
H13 |
C6 |
241.0 |
241.4 |
| H13 |
C5 |
C6 |
H6 |
178.0 |
169.3 |
| H13 |
C5 |
C4 |
H4 |
183.6 |
297.1 |
| H13 |
C5 |
C4 |
H5 |
303.2 |
176.1 |
| H14 |
N5 |
C10 |
O10 |
177.7 |
180.0 |
| H14 |
N5 |
C5 |
H13 |
176.0 |
215.7 |
| H16 |
C11 |
H15 |
H17 |
120.0 |
120.1 |
| H15 |
C11 |
H16 |
H17 |
240.0 |
240.0 |
| H15 |
C11 |
H17 |
H16 |
120.0 |
120.1 |
| H18 |
O8 |
C8 |
H8 |
297.4 |
180.0 |