PDB Chemical Component 9VP

Ideal Model

Chemical Description

Name 5-acetamido-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid
Synonyms 5-(acetylamino)-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid
Formula C11 H18 F N O7
Formal charge 0
Molecular weight 295.262 g/mol
Component type D-saccharide

Chemical features

Atom count 38
Chiral atom count 6
Chiral atoms C2 C3 C6 C7 C8 C5
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-(acetylamino)-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid
Systematic name (OpenEye OEToolkits) (2~{R},3~{R},5~{R},6~{R})-5-acetamido-3-fluoranyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CC(=O)N[C@@H]1C[C@@H](F)[C@H](O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O
SMILES (CACTVS) CC(=O)N[CH]1C[CH](F)[CH](O[CH]1[CH](O)[CH](O)CO)C(O)=O
Stereo SMILES (OpenEye) CC(=O)N[C@@H]1C[C@H]([C@H](O[C@H]1[C@@H]([C@@H](CO)O)O)C(=O)O)F
InChI descriptor InChI=1S/C11H18FNO7/c1-4(15)13-6-2-5(12)9(11(18)19)20-10(6)8(17)7(16)3-14/h5-10,14,16-17H,2-3H2,1H3,(H,13,15)(H,18,19)/t5-,6-,7-,8-,9+,10-/m1/s1
InChIKey descriptor AUOXJUOLLXNWIV-MMDZMLKVSA-N

Status Information

Last modified 2020-07-17
Created 2017-06-15
Release status REL
Model PDB code 5W26
Processing site RCSB