PDB Chemical Component 9VP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9VP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C11 |
C10 |
1.493 |
1.507 |
| O8 |
C8 |
1.429 |
1.430 |
| N5 |
C10 |
1.328 |
1.348 |
| N5 |
C5 |
1.462 |
1.466 |
| C10 |
O10 |
1.228 |
1.213 |
| O9 |
C9 |
1.434 |
1.429 |
| C6 |
C5 |
1.521 |
1.531 |
| C6 |
C7 |
1.512 |
1.531 |
| C6 |
O6 |
1.431 |
1.429 |
| C4 |
C5 |
1.518 |
1.532 |
| C4 |
C3 |
1.532 |
1.532 |
| C8 |
C7 |
1.522 |
1.530 |
| C8 |
C9 |
1.533 |
1.530 |
| C7 |
O7 |
1.425 |
1.429 |
| C2 |
C3 |
1.515 |
1.531 |
| C2 |
O6 |
1.417 |
1.429 |
| C2 |
C1 |
1.508 |
1.507 |
| C3 |
F1 |
1.366 |
1.399 |
| C1 |
O1A |
1.255 |
1.209 |
| C1 |
O1B |
1.271 |
1.342 |
| O1B |
H1 |
0.950 |
0.967 |
| C2 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.099 |
1.090 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H5 |
1.100 |
1.090 |
| C6 |
H6 |
1.100 |
1.090 |
| C7 |
H7 |
1.100 |
1.090 |
| C8 |
H8 |
1.100 |
1.089 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H10 |
1.100 |
1.090 |
| O9 |
H11 |
0.950 |
0.967 |
| O7 |
H12 |
0.950 |
0.967 |
| C5 |
H13 |
1.100 |
1.090 |
| N5 |
H14 |
1.000 |
0.970 |
| C11 |
H15 |
1.100 |
1.090 |
| C11 |
H16 |
1.101 |
1.090 |
| C11 |
H17 |
1.100 |
1.090 |
| O8 |
H18 |
0.950 |
0.967 |
Bond Angles for 9VP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O8 |
C8 |
H8 |
109.0 |
109.5 |
| N5 |
C10 |
O10 |
124.2 |
120.0 |
| C10 |
N5 |
H14 |
117.4 |
120.0 |
| N5 |
C5 |
H13 |
112.6 |
109.6 |
| O9 |
C9 |
H9 |
109.2 |
109.5 |
| O9 |
C9 |
H10 |
109.2 |
109.4 |
| C7 |
C6 |
C5 |
110.2 |
109.5 |
| C4 |
C5 |
C6 |
110.8 |
109.2 |
| C5 |
C6 |
H6 |
108.6 |
109.6 |
| C6 |
C5 |
H13 |
111.7 |
109.6 |
| C6 |
C7 |
O7 |
108.9 |
109.5 |
| C7 |
C6 |
H6 |
108.7 |
109.5 |
| C6 |
C7 |
H7 |
109.6 |
109.4 |
| C5 |
C4 |
H4 |
108.1 |
109.5 |
| C5 |
C4 |
H5 |
108.1 |
109.6 |
| C4 |
C5 |
H13 |
111.7 |
109.5 |
| C4 |
C3 |
H3 |
108.0 |
109.6 |
| C8 |
C7 |
O7 |
107.4 |
109.5 |
| C8 |
C7 |
H7 |
109.5 |
109.5 |
| C9 |
C8 |
H8 |
107.6 |
109.5 |
| C8 |
C9 |
H9 |
109.2 |
109.4 |
| C8 |
C9 |
H10 |
109.2 |
109.5 |
| O7 |
C7 |
H7 |
110.9 |
109.5 |
| C7 |
O7 |
H12 |
109.5 |
114.0 |
| C3 |
C2 |
O6 |
108.1 |
109.4 |
| C2 |
C3 |
F1 |
105.6 |
109.5 |
| C3 |
C2 |
H2 |
112.5 |
109.5 |
| C2 |
C3 |
H3 |
108.3 |
109.5 |
| O6 |
C2 |
H2 |
114.2 |
109.5 |
| F1 |
C3 |
H3 |
110.3 |
109.5 |
| C1 |
O1B |
H1 |
109.5 |
117.1 |
| H4 |
C4 |
H5 |
109.5 |
109.7 |
| H9 |
C9 |
H10 |
109.5 |
109.5 |
| H15 |
C11 |
H16 |
109.5 |
109.5 |
| H15 |
C11 |
H17 |
109.5 |
109.4 |
| H16 |
C11 |
H17 |
109.5 |
109.4 |
Torsion Angles for 9VP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
N5 |
H14 |
0.4 |
0.1 |
| O8 |
C8 |
C7 |
H7 |
64.7 |
59.9 |
| C9 |
C8 |
O8 |
H8 |
240.5 |
240.0 |
| O8 |
C8 |
C9 |
H9 |
208.4 |
185.0 |
| O8 |
C8 |
C9 |
H10 |
88.7 |
305.0 |
| C10 |
N5 |
C5 |
H13 |
341.9 |
35.2 |
| N5 |
C5 |
C6 |
H6 |
41.0 |
57.5 |
| C6 |
C5 |
N5 |
H13 |
121.5 |
120.2 |
| N5 |
C5 |
C4 |
H4 |
330.4 |
63.3 |
| N5 |
C5 |
C4 |
H5 |
88.8 |
303.0 |
| C4 |
C5 |
N5 |
H13 |
238.2 |
239.9 |
| O10 |
C10 |
N5 |
H14 |
180.4 |
180.0 |
| O9 |
C9 |
C8 |
H8 |
208.3 |
305.0 |
| C8 |
C9 |
O9 |
H9 |
239.8 |
120.0 |
| C8 |
C9 |
O9 |
H10 |
120.2 |
240.0 |
| H9 |
C9 |
O9 |
H10 |
240.4 |
120.0 |
| N5 |
C5 |
C6 |
H13 |
237.9 |
239.8 |
| C5 |
C6 |
C7 |
O7 |
298.7 |
305.0 |
| C7 |
C6 |
C5 |
H6 |
241.1 |
239.9 |
| C5 |
C6 |
C7 |
H7 |
60.1 |
65.1 |
| C6 |
C5 |
C4 |
H4 |
82.7 |
183.2 |
| C6 |
C5 |
C4 |
H5 |
201.1 |
62.8 |
| C4 |
C5 |
C6 |
H13 |
125.3 |
120.0 |
| C4 |
C5 |
C6 |
C7 |
169.4 |
177.6 |
| C5 |
C6 |
C7 |
H6 |
118.9 |
120.1 |
| C7 |
C6 |
C5 |
H13 |
44.1 |
57.7 |
| C8 |
C7 |
C6 |
O7 |
242.2 |
240.0 |
| C8 |
C7 |
C6 |
H7 |
120.8 |
120.0 |
| O7 |
C7 |
C6 |
H7 |
238.6 |
239.9 |
| C6 |
C7 |
O7 |
H12 |
180.0 |
300.0 |
| C4 |
C5 |
C6 |
O6 |
49.5 |
57.7 |
| C6 |
O6 |
C2 |
H2 |
293.1 |
301.1 |
| N5 |
C5 |
C4 |
H13 |
122.4 |
120.2 |
| C7 |
C6 |
C5 |
C4 |
169.4 |
177.6 |
| C4 |
C5 |
C6 |
H6 |
288.3 |
297.7 |
| C6 |
C5 |
C4 |
H13 |
234.7 |
240.0 |
| C5 |
C4 |
C3 |
H3 |
159.5 |
176.9 |
| H4 |
C4 |
C5 |
H5 |
241.6 |
120.4 |
| C4 |
C3 |
C2 |
O6 |
315.2 |
302.4 |
| C4 |
C3 |
C2 |
H2 |
82.3 |
62.4 |
| C2 |
C3 |
C4 |
H3 |
238.0 |
240.1 |
| F1 |
C3 |
C4 |
H3 |
119.4 |
120.2 |
| C8 |
C7 |
C6 |
C5 |
181.0 |
185.0 |
| C6 |
C7 |
C8 |
O7 |
118.7 |
120.0 |
| C8 |
C7 |
C6 |
H6 |
62.1 |
64.9 |
| C6 |
C7 |
C8 |
H7 |
239.1 |
240.1 |
| O7 |
C7 |
C8 |
H7 |
120.4 |
120.1 |
| C8 |
C7 |
O7 |
H12 |
299.8 |
59.9 |
| O8 |
C8 |
C9 |
H8 |
120.2 |
120.0 |
| O9 |
C9 |
C8 |
H9 |
120.2 |
240.0 |
| O9 |
C9 |
C8 |
H10 |
239.8 |
120.0 |
| C9 |
C8 |
C7 |
O7 |
60.7 |
60.0 |
| C9 |
C8 |
C7 |
H7 |
300.3 |
300.0 |
| H9 |
C9 |
C8 |
H10 |
119.6 |
240.0 |
| O7 |
C7 |
C6 |
C5 |
298.7 |
305.0 |
| O7 |
C7 |
C6 |
H6 |
179.9 |
184.9 |
| C6 |
C7 |
O7 |
H7 |
120.6 |
120.0 |
| C8 |
C7 |
O7 |
H7 |
240.4 |
240.0 |
| C4 |
C3 |
C2 |
H3 |
121.9 |
120.0 |
| O6 |
C2 |
C3 |
H2 |
233.0 |
240.0 |
| F1 |
C3 |
C2 |
H3 |
241.8 |
239.9 |
| O6 |
C2 |
C3 |
F1 |
75.2 |
62.3 |
| C3 |
C2 |
O6 |
H2 |
126.0 |
120.0 |
| O6 |
C2 |
C3 |
H3 |
193.4 |
182.4 |
| C2 |
C1 |
O1B |
H1 |
180.0 |
180.0 |
| C4 |
C3 |
F1 |
H3 |
242.0 |
239.8 |
| F1 |
C3 |
C2 |
O6 |
75.2 |
62.3 |
| F1 |
C3 |
C2 |
H2 |
202.2 |
182.3 |
| C2 |
C3 |
F1 |
H3 |
116.8 |
120.1 |
| O1A |
C1 |
O1B |
H1 |
360.0 |
0.0 |
| C3 |
C2 |
H2 |
O6 |
236.3 |
240.1 |
| H2 |
C2 |
C3 |
F1 |
202.2 |
182.3 |
| H2 |
C2 |
C3 |
H3 |
320.4 |
302.4 |
| H3 |
C3 |
C2 |
O6 |
193.4 |
182.4 |
| C2 |
C3 |
H3 |
F1 |
244.9 |
239.9 |
| H3 |
C3 |
C2 |
H2 |
320.4 |
302.4 |
| H4 |
C4 |
C5 |
C6 |
82.7 |
183.2 |
| C5 |
C4 |
H4 |
H5 |
117.5 |
239.7 |
| H4 |
C4 |
C5 |
H13 |
208.0 |
303.2 |
| H4 |
C4 |
C3 |
H3 |
38.7 |
296.7 |
| H5 |
C4 |
C5 |
C6 |
201.1 |
62.8 |
| C5 |
C4 |
H5 |
H4 |
242.5 |
120.3 |
| H5 |
C4 |
C5 |
H13 |
326.4 |
182.8 |
| H5 |
C4 |
C3 |
H3 |
280.3 |
57.0 |
| C7 |
C6 |
H6 |
C5 |
119.9 |
120.1 |
| H6 |
C6 |
C5 |
H13 |
163.0 |
177.7 |
| H6 |
C6 |
C7 |
O7 |
179.9 |
184.9 |
| H6 |
C6 |
C7 |
H7 |
301.3 |
305.0 |
| H7 |
C7 |
C6 |
C5 |
60.1 |
65.1 |
| C6 |
C7 |
H7 |
O7 |
239.8 |
240.0 |
| H7 |
C7 |
C6 |
H6 |
301.3 |
305.0 |
| C8 |
C7 |
H7 |
O7 |
118.3 |
120.0 |
| H7 |
C7 |
O7 |
H12 |
59.4 |
180.0 |
| H8 |
C8 |
C7 |
O7 |
303.2 |
300.0 |
| H8 |
C8 |
C7 |
H7 |
182.8 |
180.0 |
| H8 |
C8 |
C9 |
H9 |
88.1 |
65.0 |
| H8 |
C8 |
C9 |
H10 |
328.5 |
185.0 |
| O9 |
C9 |
H9 |
H10 |
119.5 |
240.0 |
| H9 |
C9 |
C8 |
H8 |
88.1 |
65.0 |
| C8 |
C9 |
H9 |
H10 |
240.5 |
120.0 |
| O9 |
C9 |
H10 |
H9 |
240.5 |
120.0 |
| H10 |
C9 |
C8 |
H8 |
328.5 |
185.0 |
| C8 |
C9 |
H10 |
H9 |
119.5 |
240.0 |
| H11 |
O9 |
C9 |
H9 |
300.2 |
60.0 |
| H11 |
O9 |
C9 |
H10 |
59.8 |
300.0 |
| H12 |
O7 |
C7 |
H7 |
59.4 |
180.0 |
| C4 |
C5 |
H13 |
C6 |
235.2 |
240.3 |
| H13 |
C5 |
C6 |
H6 |
163.0 |
177.7 |
| H13 |
C5 |
C4 |
H4 |
208.0 |
303.2 |
| H13 |
C5 |
C4 |
H5 |
326.4 |
182.8 |
| H14 |
N5 |
C10 |
O10 |
180.4 |
180.0 |
| H14 |
N5 |
C5 |
H13 |
161.9 |
215.1 |
| H16 |
C11 |
H15 |
H17 |
120.0 |
120.0 |
| H15 |
C11 |
H16 |
H17 |
240.0 |
240.0 |
| H15 |
C11 |
H17 |
H16 |
120.0 |
120.0 |
| H18 |
O8 |
C8 |
H8 |
62.6 |
180.0 |