PDB Chemical Component 9VL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9VL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C20 |
C21 |
1.384 |
1.383 |
| C20 |
C19 |
1.379 |
1.382 |
| C21 |
C15 |
1.376 |
1.382 |
| C19 |
C18 |
1.372 |
1.382 |
| C15 |
C14 |
1.519 |
1.507 |
| C15 |
C16 |
1.402 |
1.383 |
| C18 |
C16 |
1.384 |
1.384 |
| C14 |
O13 |
1.425 |
1.452 |
| C16 |
BR |
1.910 |
1.891 |
| O13 |
C11 |
1.441 |
1.347 |
| O12 |
C11 |
1.220 |
1.215 |
| C11 |
NZ |
1.497 |
1.348 |
| CE |
NZ |
1.472 |
1.464 |
| CE |
CD |
1.530 |
1.530 |
| CD |
CG |
1.521 |
1.530 |
| CG |
CB |
1.535 |
1.530 |
| CB |
CA |
1.543 |
1.530 |
| O |
C |
1.365 |
1.208 |
| CA |
C |
1.543 |
1.507 |
| CA |
N |
1.474 |
1.469 |
| C |
OXT |
1.369 |
1.342 |
| C20 |
H20 |
1.081 |
1.080 |
| C21 |
H21 |
1.080 |
1.080 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| CG |
HG2 |
1.100 |
1.090 |
| CG |
HG3 |
1.100 |
1.089 |
| CD |
HD2 |
1.100 |
1.090 |
| CD |
HD3 |
1.100 |
1.090 |
| CE |
HE2 |
1.100 |
1.090 |
| CE |
HE3 |
1.100 |
1.090 |
| C14 |
H12 |
1.100 |
1.090 |
| C14 |
H13 |
1.100 |
1.090 |
| C18 |
H18 |
1.080 |
1.080 |
| C19 |
H19 |
1.080 |
1.081 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
0.999 |
1.009 |
| NZ |
HZ |
1.000 |
0.970 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for 9VL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C21 |
C20 |
C19 |
121.5 |
120.0 |
| C21 |
C20 |
H20 |
119.2 |
120.0 |
| C20 |
C21 |
H21 |
119.6 |
120.0 |
| C20 |
C19 |
C18 |
118.7 |
120.0 |
| C19 |
C20 |
H20 |
119.2 |
120.0 |
| C20 |
C19 |
H19 |
120.6 |
120.0 |
| C21 |
C15 |
C14 |
116.9 |
120.0 |
| C21 |
C15 |
C16 |
117.2 |
120.0 |
| C19 |
C18 |
H18 |
120.1 |
120.1 |
| C14 |
C15 |
C16 |
125.9 |
120.0 |
| C15 |
C14 |
O13 |
111.3 |
109.5 |
| C15 |
C14 |
H12 |
109.0 |
109.4 |
| C15 |
C14 |
H13 |
109.0 |
109.5 |
| C15 |
C16 |
BR |
124.3 |
120.0 |
| C18 |
C16 |
BR |
113.8 |
120.0 |
| O13 |
C14 |
H12 |
109.0 |
109.4 |
| O13 |
C14 |
H13 |
109.0 |
109.5 |
| CE |
NZ |
C11 |
116.9 |
120.0 |
| C11 |
NZ |
HZ |
121.6 |
120.0 |
| NZ |
CE |
HE2 |
108.1 |
109.5 |
| NZ |
CE |
HE3 |
108.1 |
109.5 |
| CE |
NZ |
HZ |
121.5 |
120.0 |
| CE |
CD |
HD2 |
109.3 |
109.5 |
| CE |
CD |
HD3 |
109.3 |
109.5 |
| CD |
CG |
HG2 |
107.5 |
109.4 |
| CD |
CG |
HG3 |
107.5 |
109.5 |
| CG |
CB |
HB2 |
109.3 |
109.5 |
| CG |
CB |
HB3 |
109.4 |
109.5 |
| CB |
CA |
N |
110.1 |
109.5 |
| CB |
CA |
HA |
107.7 |
109.5 |
| O |
C |
OXT |
118.9 |
120.0 |
| CA |
C |
OXT |
120.6 |
120.0 |
| N |
CA |
HA |
108.6 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
110.9 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| HB2 |
CB |
HB3 |
109.5 |
109.5 |
| HG2 |
CG |
HG3 |
109.5 |
109.5 |
| HD2 |
CD |
HD3 |
109.5 |
109.5 |
| HE2 |
CE |
HE3 |
109.5 |
109.5 |
| H12 |
C14 |
H13 |
109.5 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
Torsion Angles for 9VL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C21 |
C20 |
C19 |
C18 |
0.3 |
0.2 |
| C19 |
C20 |
C21 |
H20 |
180.0 |
180.1 |
| C21 |
C20 |
C19 |
H19 |
180.3 |
180.0 |
| C20 |
C21 |
C15 |
C14 |
179.6 |
180.0 |
| C20 |
C21 |
C15 |
C16 |
0.7 |
359.8 |
| C21 |
C20 |
C19 |
H20 |
180.0 |
179.9 |
| C19 |
C20 |
C21 |
H21 |
179.4 |
180.0 |
| C20 |
C19 |
C18 |
H18 |
179.9 |
179.8 |
| C14 |
C15 |
C21 |
C16 |
179.0 |
180.2 |
| C21 |
C15 |
C14 |
O13 |
151.9 |
359.8 |
| C21 |
C15 |
C14 |
H12 |
272.2 |
119.7 |
| C21 |
C15 |
C14 |
H13 |
31.7 |
239.8 |
| C21 |
C15 |
C16 |
BR |
179.7 |
180.2 |
| C18 |
C19 |
C20 |
H20 |
180.4 |
180.3 |
| C20 |
C19 |
C18 |
H19 |
180.0 |
179.8 |
| C19 |
C18 |
C16 |
BR |
180.1 |
180.0 |
| C21 |
C15 |
C14 |
C16 |
181.2 |
179.8 |
| C14 |
C15 |
C16 |
BR |
0.8 |
0.0 |
| O13 |
C14 |
C15 |
H12 |
239.8 |
240.1 |
| O13 |
C14 |
C15 |
H13 |
120.3 |
120.0 |
| H12 |
C14 |
C15 |
H13 |
240.5 |
239.9 |
| C21 |
C15 |
C16 |
C14 |
178.8 |
180.2 |
| C16 |
C15 |
C14 |
O13 |
330.8 |
180.0 |
| C16 |
C15 |
C14 |
H12 |
91.0 |
299.9 |
| C16 |
C15 |
C14 |
H13 |
210.5 |
60.0 |
| C18 |
C16 |
C15 |
BR |
179.9 |
180.0 |
| C20 |
C19 |
C18 |
C16 |
359.9 |
359.8 |
| C15 |
C16 |
C18 |
BR |
180.1 |
180.0 |
| O13 |
C14 |
C15 |
C16 |
330.8 |
180.0 |
| C15 |
C14 |
O13 |
H12 |
120.2 |
119.9 |
| C15 |
C14 |
O13 |
H13 |
239.7 |
240.0 |
| H12 |
C14 |
O13 |
H13 |
119.5 |
120.0 |
| C15 |
C14 |
O13 |
C11 |
167.3 |
180.0 |
| O13 |
C11 |
NZ |
HZ |
207.0 |
360.0 |
| O12 |
C11 |
NZ |
HZ |
25.8 |
180.0 |
| C11 |
NZ |
CE |
HE2 |
265.9 |
60.0 |
| C11 |
NZ |
CE |
HE3 |
24.3 |
300.0 |
| CE |
NZ |
C11 |
HZ |
180.0 |
180.0 |
| C11 |
NZ |
CE |
HZ |
180.0 |
180.0 |
| NZ |
CE |
CD |
HD2 |
215.2 |
60.0 |
| NZ |
CE |
CD |
HD3 |
335.0 |
300.0 |
| HE2 |
CE |
NZ |
HE3 |
241.5 |
120.0 |
| CE |
CD |
CG |
HG2 |
279.2 |
60.0 |
| CE |
CD |
CG |
HG3 |
37.0 |
300.0 |
| HD2 |
CD |
CE |
HD3 |
240.2 |
120.0 |
| CD |
CG |
CB |
HB2 |
297.5 |
60.0 |
| CD |
CG |
CB |
HB3 |
57.3 |
300.0 |
| HG2 |
CG |
CD |
HG3 |
242.2 |
120.0 |
| CG |
CB |
CA |
N |
202.4 |
295.0 |
| CG |
CB |
CA |
HA |
320.7 |
55.0 |
| HB2 |
CB |
CG |
HB3 |
240.2 |
120.0 |
| CB |
CA |
C |
OXT |
229.5 |
280.0 |
| N |
CA |
CB |
HA |
241.7 |
240.0 |
| CB |
CA |
N |
H |
180.0 |
300.0 |
| CB |
CA |
N |
H2 |
300.0 |
64.0 |
| CA |
C |
O |
OXT |
177.9 |
180.0 |
| O |
C |
OXT |
HXT |
360.0 |
0.1 |
| O |
C |
CA |
OXT |
182.1 |
180.0 |
| CA |
C |
OXT |
HXT |
182.1 |
180.0 |
| CB |
CA |
N |
HA |
117.8 |
120.0 |
| N |
CA |
C |
OXT |
106.6 |
160.0 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C21 |
C20 |
H20 |
C19 |
180.0 |
180.1 |
| H20 |
C20 |
C21 |
H21 |
359.3 |
360.0 |
| H20 |
C20 |
C19 |
C18 |
180.4 |
180.3 |
| H20 |
C20 |
C19 |
H19 |
0.3 |
0.1 |
| H21 |
C21 |
C20 |
C19 |
179.4 |
180.0 |
| H21 |
C21 |
C20 |
H20 |
359.3 |
360.0 |
| H21 |
C21 |
C15 |
C14 |
359.6 |
359.9 |
| H21 |
C21 |
C15 |
C16 |
180.7 |
179.7 |
| CB |
CA |
HA |
N |
240.7 |
240.0 |
| HA |
CA |
C |
OXT |
350.3 |
40.0 |
| HA |
CA |
N |
H |
62.2 |
180.0 |
| HA |
CA |
N |
H2 |
182.3 |
303.9 |
| CG |
CB |
HB2 |
HB3 |
119.8 |
240.0 |
| HB2 |
CB |
CA |
N |
82.3 |
55.0 |
| HB2 |
CB |
CA |
HA |
200.6 |
175.0 |
| CG |
CB |
HB3 |
HB2 |
240.2 |
120.0 |
| HB3 |
CB |
CA |
N |
322.5 |
175.0 |
| HB3 |
CB |
CA |
HA |
80.7 |
295.0 |
| CD |
CG |
HG2 |
HG3 |
116.4 |
240.0 |
| HG2 |
CG |
CB |
HB2 |
176.4 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
296.2 |
59.9 |
| CD |
CG |
HG3 |
HG2 |
243.6 |
120.0 |
| HG3 |
CG |
CB |
HB2 |
58.6 |
300.0 |
| HG3 |
CG |
CB |
HB3 |
178.4 |
180.0 |
| CE |
CD |
HD2 |
HD3 |
119.7 |
240.0 |
| HD2 |
CD |
CG |
HG2 |
159.1 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
276.8 |
60.0 |
| CE |
CD |
HD3 |
HD2 |
240.3 |
120.0 |
| HD3 |
CD |
CG |
HG2 |
39.3 |
300.0 |
| HD3 |
CD |
CG |
HG3 |
157.0 |
180.0 |
| HE2 |
CE |
NZ |
C11 |
265.9 |
60.0 |
| NZ |
CE |
HE2 |
HE3 |
117.6 |
239.9 |
| HE2 |
CE |
NZ |
HZ |
85.9 |
240.0 |
| HE2 |
CE |
CD |
HD2 |
94.4 |
180.1 |
| HE2 |
CE |
CD |
HD3 |
214.2 |
60.1 |
| HE3 |
CE |
NZ |
C11 |
24.3 |
300.0 |
| NZ |
CE |
HE3 |
HE2 |
242.4 |
120.1 |
| HE3 |
CE |
NZ |
HZ |
204.3 |
120.0 |
| HE3 |
CE |
CD |
HD2 |
335.9 |
300.0 |
| HE3 |
CE |
CD |
HD3 |
95.7 |
180.0 |
| H12 |
C14 |
C15 |
C16 |
91.0 |
299.9 |
| C15 |
C14 |
H12 |
O13 |
238.4 |
240.1 |
| C15 |
C14 |
H12 |
H13 |
119.2 |
120.0 |
| O13 |
C14 |
H12 |
H13 |
240.8 |
240.0 |
| H13 |
C14 |
C15 |
C16 |
210.5 |
60.0 |
| C15 |
C14 |
H13 |
O13 |
121.6 |
120.0 |
| C15 |
C14 |
H13 |
H12 |
240.8 |
240.0 |
| O13 |
C14 |
H13 |
H12 |
119.2 |
120.0 |
| H18 |
C18 |
C16 |
BR |
0.1 |
360.0 |
| C20 |
C19 |
H19 |
C18 |
180.0 |
180.2 |
| H19 |
C19 |
C20 |
H20 |
0.3 |
0.1 |
| H19 |
C19 |
C18 |
H18 |
359.9 |
360.0 |
| H |
N |
CA |
HA |
62.2 |
180.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H2 |
N |
CA |
HA |
182.3 |
303.9 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| CE |
NZ |
HZ |
C11 |
180.0 |
180.0 |
| HZ |
NZ |
CE |
HE2 |
85.9 |
240.0 |
| HZ |
NZ |
CE |
HE3 |
204.3 |
120.0 |