PDB Chemical Component 9UY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9UY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1D CGD 1.255 1.208
O2A CGA 1.242 1.208
CGD O2D 1.236 1.342
CGD CBD 1.518 1.507
CAD CBD 1.546 1.530
CAD C3D 1.501 1.507
CGA O1A 1.199 1.342
CGA CBA 1.497 1.507
CAA CBA 1.516 1.531
CAA C2A 1.502 1.507
C3D C2D 1.462 1.409
C3D C4D 1.457 1.349
CMD C2D 1.487 1.508
CHA C4D 1.477 1.507
CHA C1A 1.470 1.507
C2D C1D 1.466 1.349
C2A C1A 1.465 1.349
C2A C3A 1.443 1.409
C4D ND 1.374 1.364
C1A NA 1.345 1.364
CMA C3A 1.487 1.507
C3A C4A 1.461 1.349
C1D ND 1.360 1.363
C1D CHD 1.486 1.506
NA C4A 1.352 1.364
CHD C4C 1.355 1.507
C4A CHB 1.465 1.507
CHB C1B 1.493 1.507
C4C C3C 1.507 1.513
C4C NC 1.326 1.287
C3C CAC 1.503 1.507
C3C C2C 1.522 1.543
NC C1C 1.329 1.340
C1B NB 1.351 1.312
C1B C2B 1.480 1.414
NB C4B 1.359 1.348
CAC CBC 1.315 1.310
CMC C2C 1.530 1.529
C2C C1C 1.499 1.516
C2B CMB 1.504 1.506
C2B C3B 1.474 1.366
C4B OB 1.265 1.212
C4B C3B 1.490 1.505
C1C OC 1.211 1.213
C3B CAB 1.507 1.417
CAB CBB 1.332 1.343
O2D H1 0.950 0.967
CBD H2 1.100 1.090
CBD H3 1.099 1.090
CAD H4 1.100 1.090
CAD H5 1.100 1.090
CMD H6 1.101 1.089
CMD H7 1.100 1.089
CMD H8 1.100 1.090
CHD H9 1.100 1.090
CHD H10 1.100 1.091
C3C H11 1.100 1.090
CAC H12 1.080 1.079
CBC H13 1.080 1.080
CBC H14 1.080 1.079
C2C H15 1.100 1.091
CMC H16 1.100 1.091
CMC H17 1.101 1.091
CMC H18 1.101 1.090
ND H19 1.000 0.969
CHA H20 1.100 1.090
CHA H21 1.100 1.090
CAA H22 1.100 1.090
CAA H23 1.100 1.089
CBA H24 1.100 1.090
CBA H25 1.100 1.090
O1A H26 0.950 0.967
CMA H27 1.100 1.090
CMA H28 1.100 1.090
CMA H29 1.100 1.090
NA H30 1.000 0.970
CHB H31 1.100 1.090
CHB H32 1.100 1.090
CMB H33 1.100 1.090
CMB H34 1.100 1.090
CMB H35 1.101 1.090
CAB H36 1.080 1.080
CBB H37 1.080 1.079
CBB H38 1.080 1.080

Bond Angles for 9UY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1D CGD CBD 119.4 120.0
O2A CGA O1A 123.8 120.0
CGD O2D H1 109.5 117.0
CGD CBD H2 109.6 109.5
CGD CBD H3 109.6 109.5
CAD CBD H2 109.6 109.5
CAD CBD H3 109.6 109.4
CAD C3D C2D 126.4 126.3
CAD C3D C4D 129.3 126.3
C3D CAD H4 109.3 109.4
C3D CAD H5 109.3 109.5
CGA O1A H26 109.5 117.1
CGA CBA H24 108.0 109.5
CGA CBA H25 108.0 109.5
CBA CAA H22 110.4 109.4
CBA CAA H23 110.4 109.5
CAA CBA H24 107.9 109.4
CAA CBA H25 107.9 109.5
CAA C2A C3A 125.7 126.3
C2D C3D C4D 104.2 107.4
C3D C2D C1D 104.5 107.5
C3D C4D ND 112.6 108.2
CMD C2D C1D 126.9 126.3
CHA C1A NA 124.8 125.9
C1A CHA H20 104.3 109.5
C1A CHA H21 104.3 109.4
C2D C1D ND 112.3 108.2
C2D C1D CHD 120.6 125.9
C2A C1A NA 113.4 108.2
C2A C3A C4A 103.2 107.4
C1D ND C4D 106.3 108.7
C4D ND H19 126.8 125.6
C1A NA C4A 105.0 108.7
C1A NA H30 127.5 125.6
CMA C3A C4A 130.2 126.3
C3A C4A CHB 125.5 125.9
CHD C1D ND 127.0 125.9
C1D ND H19 126.8 125.7
C1D CHD C4C 129.5 109.5
C1D CHD H9 104.2 109.5
C1D CHD H10 104.2 109.4
NA C4A CHB 120.3 125.8
CHD C4C C3C 121.7 125.1
CHD C4C NC 128.5 125.0
C4C CHD H9 104.2 109.5
C4C CHD H10 104.3 109.5
C4A CHB C1B 124.7 109.5
C4A CHB H31 105.5 109.5
C4A CHB H32 105.5 109.4
CHB C1B NB 124.2 124.6
CHB C1B C2B 121.5 124.6
C1B CHB H31 105.5 109.5
C1B CHB H32 105.6 109.5
C3C C4C NC 109.8 109.9
C4C C3C CAC 106.6 110.6
C4C C3C C2C 104.0 103.2
C4C C3C H11 111.9 110.7
C4C NC C1C 112.2 115.6
CAC C3C C2C 110.3 110.7
C3C CAC CBC 119.0 120.0
CAC C3C H11 111.9 110.6
C3C CAC H12 120.5 120.0
C3C C2C C1C 101.9 102.7
C2C C3C H11 111.7 110.8
C3C C2C H15 107.2 110.7
C2B C1B NB 114.2 110.8
C1B NB C4B 104.5 110.2
C1B C2B CMB 125.6 126.3
C1B C2B C3B 104.3 107.3
CBC CAC H12 120.5 120.0
CAC CBC H13 120.0 120.0
CAC CBC H14 120.0 120.0
CMC C2C C1C 114.8 110.8
CMC C2C H15 107.1 110.8
C2C C1C OC 122.7 125.7
C1C C2C H15 107.5 110.8
CMB C2B C3B 130.1 126.4
C2B CMB H33 109.5 109.5
C2B CMB H34 109.5 109.5
C2B CMB H35 109.5 109.5
C2B C3B CAB 122.1 127.4
C3B CAB CBB 131.8 120.0
C3B CAB H36 114.1 120.0
CBB CAB H36 114.1 120.0
CAB CBB H37 120.0 120.0
CAB CBB H38 120.0 120.0
H2 CBD H3 109.5 109.5
H4 CAD H5 109.5 109.4
H6 CMD H7 109.5 109.5
H6 CMD H8 109.5 109.5
H7 CMD H8 109.5 109.5
H9 CHD H10 109.5 109.4
H13 CBC H14 120.0 120.0
H16 CMC H17 109.4 109.4
H16 CMC H18 109.5 109.5
H17 CMC H18 109.5 109.5
H20 CHA H21 109.5 109.4
H22 CAA H23 109.5 109.5
H24 CBA H25 109.5 109.5
H27 CMA H28 109.4 109.5
H27 CMA H29 109.4 109.5
H28 CMA H29 109.5 109.5
H31 CHB H32 109.5 109.4
H33 CMB H34 109.5 109.4
H33 CMB H35 109.4 109.4
H34 CMB H35 109.5 109.5
H37 CBB H38 120.0 120.0

Torsion Angles for 9UY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1D CGD O2D H1 0.0 359.9
O1D CGD CBD H2 46.8 120.0
O1D CGD CBD H3 166.9 240.1
O2A CGA O1A H26 0.0 360.0
O2A CGA CBA H24 125.4 240.0
O2A CGA CBA H25 243.6 119.9
CBD CGD O2D H1 182.7 180.0
CAD CBD CGD H2 240.1 240.0
CAD CBD CGD H3 120.0 119.9
H2 CBD CGD H3 239.9 239.9
CGD CBD CAD H2 119.9 120.0
CGD CBD CAD H3 240.1 240.0
H2 CBD CAD H3 120.1 120.0
C3D CAD CBD H2 68.8 60.0
C3D CAD CBD H3 308.6 300.0
C2D C3D CAD C4D 179.3 180.2
CAD C3D C2D C1D 180.0 180.1
CAD C3D C4D ND 179.8 179.8
H4 CAD C3D H5 119.8 119.9
O1A CGA CBA H24 303.9 60.0
O1A CGA CBA H25 62.2 299.9
CGA CBA CAA H22 296.7 60.0
CGA CBA CAA H23 57.9 300.0
CAA CBA CGA H24 239.1 119.9
CAA CBA CGA H25 120.9 240.0
H24 CBA CGA H25 241.7 120.1
CGA CBA CAA H24 120.9 240.0
CGA CBA CAA H25 239.1 120.0
CBA CAA C2A C3A 276.0 270.1
H22 CAA CBA H23 238.8 120.0
H24 CBA CAA H25 118.2 240.0
CAA C2A C1A NA 181.7 180.3
CAA C2A C3A C4A 177.5 179.9
CAD C3D C2D C4D 180.5 179.8
C2D C3D CAD H4 348.2 330.0
C2D C3D CAD H5 228.4 210.1
C2D C3D C4D ND 0.3 359.6
CMD C2D C3D C1D 181.6 179.9
C3D C2D C1D ND 0.6 360.0
C3D C2D C1D CHD 177.4 180.1
CAD C3D C4D C2D 179.5 180.2
C4D C3D CAD H4 168.9 149.8
C4D C3D CAD H5 49.0 29.8
C4D C3D C2D C1D 359.5 0.3
C1D ND C4D C3D 0.1 0.4
C3D C4D ND H19 180.1 180.2
CMD C2D C3D C4D 181.0 180.2
C3D C2D CMD C1D 178.1 180.1
CMD C2D C1D ND 179.1 180.0
CMD C2D C1D CHD 355.9 0.1
CHA C4D ND H19 1.3 0.1
C2A C1A CHA NA 181.2 180.2
CHA C1A NA C4A 182.3 179.8
CHA C1A NA H30 2.3 359.9
H20 CHA C1A H21 114.8 120.0
C1D C2D C3D C4D 359.5 0.3
C2D C1D ND C4D 359.6 359.8
CHD C1D C2D ND 176.8 180.1
C2D C1D ND H19 179.6 180.0
C2D C1D CHD C4C 198.4 84.9
C2D C1D CHD H9 321.0 205.0
C2D C1D CHD H10 75.8 324.9
CHA C1A C2A NA 178.9 179.8
C2A C1A CHA H20 51.4 325.2
C2A C1A CHA H21 296.5 205.2
C2A C1A NA C4A 1.2 359.6
C2A C1A NA H30 181.2 179.8
C3A C2A C1A NA 359.7 0.2
CMA C3A C2A C4A 178.4 180.1
C2A C3A C4A CHB 180.3 180.0
CHD C1D ND C4D 183.0 179.7
C1D ND C4D H19 180.0 180.2
NA C1A CHA H20 230.2 145.0
NA C1A CHA H21 115.3 25.0
C1A NA C4A CHB 179.5 180.2
C2A C3A CMA C4A 182.0 179.9
CMA C3A C4A CHB 2.0 359.9
C1A NA C4A C3A 358.3 0.4
NA C4A C3A CHB 181.3 179.8
C3A C4A CHB C1B 37.9 85.0
C3A C4A CHB H31 159.9 205.1
C3A C4A CHB H32 275.8 325.0
C3D C4D ND C1D 0.1 0.4
C2D C1D ND CHD 176.5 180.1
C4D ND C1D H19 180.0 179.8
ND C1D CHD C4C 14.7 265.0
ND C1D CHD H9 137.3 25.1
ND C1D CHD H10 252.1 145.0
C2D C1D CHD ND 183.8 179.9
CHD C1D ND H19 3.1 359.9
C1D CHD C4C C3C 186.8 180.0
C1D CHD C4C NC 4.5 359.7
C4C CHD C1D H9 237.4 239.9
C4C CHD C1D H10 122.6 120.0
H9 CHD C1D H10 245.2 240.1
C1A NA C4A H30 180.0 180.1
C3A C4A NA CHB 178.8 180.2
NA C4A CHB C1B 216.5 265.2
NA C4A CHB H31 338.6 25.3
NA C4A CHB H32 94.5 145.2
C4C CHD C1D ND 14.7 265.0
C1D CHD C4C H9 122.6 120.0
C1D CHD C4C H10 237.4 240.0
C3C C4C CHD NC 182.3 180.4
CHD C4C C3C CAC 289.9 298.4
CHD C4C C3C C2C 173.3 180.0
CHD C4C C3C H11 52.6 61.3
CHD C4C NC C1C 182.2 179.8
H9 CHD C4C H10 114.8 120.0
C4A CHB C1B NB 7.2 0.0
C4A CHB C1B C2B 191.7 180.3
C1B CHB C4A H31 238.0 240.0
C1B CHB C4A H32 122.1 120.0
H31 CHB C4A H32 244.1 240.1
C4A CHB C1B H31 122.0 120.1
C4A CHB C1B H32 237.9 240.0
C2B C1B CHB NB 184.4 180.3
CHB C1B NB C4B 183.4 179.8
CHB C1B C2B CMB 357.1 360.0
CHB C1B C2B C3B 175.7 180.0
H31 CHB C1B H32 115.9 120.0
CHD C4C C3C NC 178.1 179.7
C3C C4C CHD H9 64.2 60.0
C3C C4C CHD H10 309.4 300.0
C3C C4C NC C1C 0.2 359.5
CAC C3C C4C C2C 116.6 118.4
C4C C3C CAC CBC 284.1 121.5
CAC C3C C4C H11 237.3 237.1
C4C C3C CAC H12 104.1 301.4
C4C C3C C2C C1C 6.9 0.0
C2C C3C C4C H11 120.7 118.6
C4C C3C C2C H15 119.6 118.3
CHD C4C NC C3C 182.1 180.3
NC C4C CHD H9 241.9 239.6
NC C4C CHD H10 127.1 119.7
NC C4C C3C CAC 111.8 118.7
NC C4C C3C C2C 355.2 0.3
NC C4C C3C H11 234.5 241.6
CAC C3C C4C NC 111.8 118.7
C4C C3C CAC C2C 247.6 246.2
C4C C3C CAC H11 122.7 123.0
CAC C3C C2C C1C 252.9 241.6
C2C C3C CAC H11 235.0 236.8
CAC C3C C2C H15 5.6 359.9
CBC CAC C3C H12 180.0 180.0
C3C CAC CBC H13 180.0 0.0
C3C CAC CBC H14 360.0 180.0
C2C C3C C4C NC 355.2 0.3
C4C C3C C2C CAC 114.0 118.4
C4C C3C C2C H11 239.2 241.5
C2C C3C CAC CBC 36.5 235.2
CAC C3C C2C H11 125.1 123.1
C2C C3C CAC H12 216.5 55.2
CMC C2C C3C C1C 233.5 241.7
CMC C2C C3C H15 120.8 123.4
C3C C2C C1C OC 170.6 180.0
C1C C2C C3C H15 247.2 241.7
NC C1C C2C H15 240.0 241.5
CHB C1B NB C2B 184.1 180.2
NB C1B CHB H31 245.2 240.0
NB C1B CHB H32 129.3 120.0
NB C1B C2B CMB 181.1 180.2
NB C1B C2B C3B 359.7 0.3
CHB C1B C2B NB 176.0 179.8
C2B C1B CHB H31 69.6 60.3
C2B C1B CHB H32 313.7 300.3
C2B C1B NB C4B 359.2 359.5
CMB C2B C1B C3B 181.4 180.0
C1B C2B CMB H33 180.0 90.0
C1B C2B CMB H34 300.0 210.0
C1B C2B CMB H35 60.0 330.1
C1B C2B C3B CAB 178.0 180.0
CBC CAC C3C C2C 36.5 235.2
CBC CAC C3C H11 161.5 358.5
C3C CAC CBC H12 180.0 180.0
H13 CBC CAC H14 180.0 180.0
C3C C2C CMC C1C 119.9 113.3
CMC C2C C3C H11 1.2 0.2
C3C C2C CMC H15 239.2 236.7
CMC C2C C1C OC 299.0 298.3
C1C C2C CMC H15 119.2 123.4
C4C NC C1C C2C 4.8 0.5
C1C C2C C3C H11 127.7 118.5
C3C C2C C1C H15 112.6 118.3
CMC C2C C1C H15 241.0 236.6
CMB C2B C1B NB 181.1 180.2
C1B C2B CMB C3B 178.2 180.0
CMB C2B C3B CAB 356.5 0.0
H33 CMB C2B H34 240.0 240.0
H33 CMB C2B H35 120.0 120.0
H34 CMB C2B H35 240.0 239.9
C3B C2B C1B NB 359.7 0.3
C1B C2B C3B CMB 181.5 180.0
C3B C2B CMB H33 1.8 270.0
C3B C2B CMB H34 121.8 30.0
C3B C2B CMB H35 241.8 150.0
C2B C3B CAB CBB 172.4 180.0
C2B C3B CAB H36 352.4 360.0
C1B NB C4B OB 179.1 180.1
C1B NB C4B C3B 1.7 0.4
C4B C3B CAB H36 168.0 179.9
C4C NC C1C OC 186.9 180.2
OC C1C C2C H15 58.0 61.7
CBB CAB C3B H36 180.0 180.0
C3B CAB CBB H37 180.0 360.0
C3B CAB CBB H38 0.0 180.0
C3B CAB CBB H36 180.0 180.0
H37 CBB CAB H38 180.0 179.9
CGD CBD H2 H3 120.2 120.0
CAD CBD H2 H3 239.8 240.0
CGD CBD H3 H2 239.8 239.9
CAD CBD H3 H2 120.2 120.0
H4 CAD CBD H2 188.8 180.0
H4 CAD CBD H3 68.7 60.0
H4 CAD C3D C2D 348.2 330.0
H4 CAD C3D C4D 168.9 149.8
C3D CAD H4 H5 240.2 240.0
H5 CAD CBD H2 308.7 299.9
H5 CAD CBD H3 188.5 179.9
H5 CAD C3D C2D 228.4 210.1
H5 CAD C3D C4D 49.0 29.8
C3D CAD H5 H4 119.7 119.9
H6 CMD C2D C1D 270.9 269.9
H7 CMD H6 H8 120.0 120.1
H7 CMD C2D C1D 30.9 30.0
H6 CMD H7 H8 240.0 239.9
H8 CMD C2D C1D 150.9 150.0
H6 CMD H8 H7 120.0 120.1
H9 CHD C1D ND 137.3 25.1
C1D CHD H9 C4C 222.1 239.9
C1D CHD H9 H10 111.0 119.9
H9 CHD C4C C3C 64.2 60.0
H9 CHD C4C NC 241.9 239.6
C4C CHD H9 H10 248.9 240.0
H10 CHD C1D ND 252.1 145.0
C1D CHD H10 C4C 137.9 120.0
C1D CHD H10 H9 249.0 240.1
H10 CHD C4C C3C 309.4 300.0
H10 CHD C4C NC 127.1 119.7
C4C CHD H10 H9 111.0 120.0
H11 C3C C4C NC 234.5 241.6
C4C C3C H11 CAC 240.4 237.0
C4C C3C H11 C2C 116.1 113.9
CAC C3C H11 C2C 235.8 236.8
H11 C3C CAC CBC 161.5 358.5
H11 C3C CAC H12 341.5 178.4
H11 C3C C2C C1C 127.7 118.5
H11 C3C C2C H15 240.5 236.8
H12 CAC C3C C2C 216.5 55.2
C3C CAC H12 CBC 180.0 180.0
H12 CAC C3C H11 341.5 178.4
H12 CAC CBC H13 360.0 180.1
H12 CAC CBC H14 180.0 0.0
H13 CBC CAC H12 360.0 180.1
CAC CBC H13 H14 180.0 180.0
H14 CBC CAC H12 180.0 0.0
CAC CBC H14 H13 180.0 180.0
C3C C2C H15 C1C 251.1 246.7
H15 C2C C3C H11 240.5 236.8
CMC C2C H15 C1C 123.8 123.4
H15 C2C C1C OC 58.0 61.7
H16 CMC C2C C1C 60.1 306.8
H16 CMC C2C H15 300.8 183.4
H17 CMC H16 H18 120.0 120.0
H17 CMC C2C C1C 180.1 66.7
H17 CMC C2C H15 60.8 303.3
H16 CMC H17 H18 240.0 240.0
H18 CMC C2C C1C 300.1 186.7
H18 CMC C2C H15 180.8 63.4
H16 CMC H18 H17 120.0 119.9
C1D ND H19 C4D 180.0 179.7
H20 CHA C1A NA 230.2 145.0
C1A CHA H20 H21 248.9 240.0
H21 CHA C1A NA 115.3 25.0
C1A CHA H21 H20 111.1 120.0
CBA CAA H22 H23 121.7 240.0
H22 CAA CBA H24 175.8 180.0
H22 CAA CBA H25 57.6 300.0
H22 CAA C2A C3A 156.6 30.0
CBA CAA H23 H22 238.3 120.0
H23 CAA CBA H24 297.0 60.0
H23 CAA CBA H25 178.7 180.0
H23 CAA C2A C3A 35.3 150.0
CGA CBA H24 H25 117.3 239.9
H24 CBA CAA H22 175.8 180.0
H24 CBA CAA H23 297.0 60.0
CAA CBA H24 H25 242.8 120.0
CGA CBA H25 H24 242.7 120.1
H25 CBA CAA H22 57.6 300.0
H25 CBA CAA H23 178.7 180.0
CAA CBA H25 H24 117.2 240.0
H27 CMA C3A C4A 268.9 270.0
H28 CMA H27 H29 120.0 120.0
H28 CMA C3A C4A 28.9 30.1
H27 CMA H28 H29 240.0 240.0
H29 CMA C3A C4A 148.9 150.1
H27 CMA H29 H28 120.0 120.0
C1A NA H30 C4A 180.0 179.8
H30 NA C4A CHB 359.5 0.0
C4A CHB H31 C1B 226.3 240.0
C4A CHB H31 H32 113.2 119.9
H31 CHB C1B NB 245.2 240.0
H31 CHB C1B C2B 69.6 60.3
C1B CHB H31 H32 246.8 240.0
C4A CHB H32 C1B 133.7 120.0
C4A CHB H32 H31 246.8 240.0
H32 CHB C1B NB 129.3 120.0
H32 CHB C1B C2B 313.7 300.3
C1B CHB H32 H31 113.2 120.0
H33 CMB C2B C3B 1.8 270.0
C2B CMB H33 H34 120.0 120.0
C2B CMB H33 H35 240.0 240.0
H34 CMB H33 H35 120.0 119.9
H34 CMB C2B C3B 121.8 30.0
C2B CMB H34 H33 240.0 240.0
C2B CMB H34 H35 120.0 120.1
H33 CMB H34 H35 240.0 240.1
H35 CMB C2B C3B 241.8 150.0
C2B CMB H35 H33 120.0 120.0
C2B CMB H35 H34 240.0 239.9
H33 CMB H35 H34 120.0 119.9
C3B CAB H36 CBB 180.0 180.0
H36 CAB CBB H37 360.0 180.0
H36 CAB CBB H38 180.0 0.1
H37 CBB CAB H36 360.0 180.0
CAB CBB H37 H38 180.0 180.1
H38 CBB CAB H36 180.0 0.1
CAB CBB H38 H37 180.0 179.9