Atom Nomenclature for 9UY

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9UY

Atom Name (V3) Atom Name (V2)
O2D O1
CGD C1
O1D O2
CBD C2
CAD C3
C3D C4
C2D C5
CMD C6
C1D C7
CHD C8
C4C C9
C3C C10
CAC C11
CBC C12
C2C C13
CMC C14
C1C C15
OC O3
NC N1
C4D C16
ND N2
CHA C17
C1A C18
C2A C19
CAA C20
CBA C21
CGA C22
O2A O4
O1A O5
C3A C23
CMA C24
C4A C25
NA N3
CHB C26
C1B C27
C2B C28
CMB C29
C3B C30
CAB C31
CBB C32
C4B C33
OB O6
NB N4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38