Atom Nomenclature for 9UE

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9UE

Atom Name (V3) Atom Name (V2)
C35 C1
C34 C2
C33 C3
C32 C4
C31 C5
C30 C6
C29 C7
C28 C8
C27 C9
C26 C10
C25 C11
C24 C12
O2 O1
C1 C13
O1 O2
C2 C14
C3 C15
O3 O3
C4 C16
C5 C17
O4 O4
C6 C18
C23 C19
C22 C20
C21 C21
C20 C22
C19 C23
C18 C24
C17 C25
N3 N1
C16 C26
C15 C27
N2 N2
C14 C28
C13 C29
C12 C30
N1 N3
C11 C31
C10 C32
C9 C33
C8 C34
C7 C35
O5 O5
BR BR1
N N4
O O6
C C36
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45