PDB Chemical Component 9UD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9UD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C N 1.457 1.464
N1 N 1.349 1.400
N1 C3 1.320 1.306
N C1 1.339 1.349
C3 C2 1.410 1.409
C1 C2 1.375 1.364
C13 C6 1.507 1.507
C13 C12 1.503 1.528
C5 C6 1.391 1.382
C5 C4 1.390 1.392
C2 C4 1.488 1.484
C6 C7 1.399 1.388
C4 C9 1.400 1.394
C12 C11 1.507 1.534
C11 N2 1.473 1.469
C7 N2 1.420 1.400
C7 C8 1.394 1.392
C9 C8 1.392 1.378
C9 C10 1.521 1.507
C26 C25 1.506 1.508
N2 C14 1.398 1.400
C10 F1 1.360 1.399
C10 F 1.359 1.399
C22 C21 1.504 1.510
C22 N5 1.465 1.474
C25 N5 1.355 1.348
C25 O1 1.228 1.212
C14 C21 1.462 1.398
C14 N3 1.310 1.315
C21 C20 1.366 1.357
N5 C23 1.469 1.470
N3 N4 1.377 1.402
C20 N4 1.347 1.345
C20 C24 1.494 1.508
C23 C24 1.519 1.534
N4 C15 1.473 1.465
C16 C15 1.516 1.531
C16 C17 1.506 1.530
C15 C19 1.523 1.532
C19 C18 1.509 1.531
C17 O 1.426 1.429
O C18 1.429 1.429
C5 H1 1.080 1.080
C8 H2 1.080 1.079
C10 H3 1.100 1.091
C11 H4 1.100 1.090
C11 H5 1.100 1.090
C12 H6 1.100 1.090
C12 H7 1.100 1.091
C13 H8 1.100 1.090
C13 H9 1.100 1.090
C15 H10 1.100 1.090
C H11 1.100 1.090
C H12 1.100 1.090
C H13 1.101 1.090
C1 H14 1.080 1.080
C16 H15 1.100 1.091
C16 H16 1.100 1.090
C17 H17 1.100 1.090
C17 H18 1.101 1.090
C18 H19 1.100 1.090
C18 H20 1.100 1.091
C19 H21 1.100 1.090
C19 H22 1.100 1.090
C22 H23 1.100 1.090
C22 H24 1.100 1.090
C23 H25 1.100 1.090
C23 H26 1.100 1.090
C24 H27 1.100 1.090
C24 H28 1.100 1.090
C26 H29 1.100 1.090
C26 H30 1.100 1.090
C26 H31 1.100 1.090
C3 H32 1.080 1.080

Bond Angles for 9UD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C N C1 127.6 125.9
N N1 C3 104.3 108.6
N1 N C1 112.9 108.2
N1 C3 C2 111.9 108.1
N1 C3 H32 124.1 126.0
N C1 C2 106.8 107.6
N C1 H14 126.6 126.2
C2 C1 H14 126.6 126.2
C13 C12 H6 109.7 109.6
C13 C12 H7 109.7 109.7
C5 C6 C7 119.0 119.7
C6 C5 H1 119.2 119.9
C5 C4 C9 119.5 119.9
C6 C7 N2 119.4 120.8
C6 C7 C8 119.2 120.2
C4 C9 C8 118.7 119.8
C4 C9 C10 122.4 120.1
C12 C11 H4 109.6 109.8
C12 C11 H5 109.5 109.9
C11 N2 C14 121.6 120.5
C8 C7 N2 121.4 119.0
C7 N2 C14 120.6 120.5
C7 C8 H2 119.1 119.9
C9 C8 H2 119.1 119.9
C9 C10 F1 107.9 109.5
C9 C10 F 110.6 109.5
C9 C10 H3 109.0 109.4
C26 C25 N5 118.2 119.9
C26 C25 O1 121.5 120.0
N2 C14 C21 126.0 126.1
N2 C14 N3 122.8 126.1
F C10 F1 106.7 109.5
F1 C10 H3 111.3 109.5
F C10 H3 111.3 109.5
C22 N5 C25 125.6 120.9
C22 N5 C23 117.0 118.4
N5 C22 H23 109.7 109.9
N5 C22 H24 109.7 109.9
N5 C25 O1 120.3 120.1
C14 C21 C20 103.9 108.1
C14 N3 N4 104.8 108.2
C21 C20 C24 125.7 124.5
N5 C23 H25 109.0 109.6
N5 C23 H26 109.0 109.6
N3 N4 C15 119.4 126.0
C20 C24 C23 107.5 108.8
C20 C24 H27 110.0 109.6
C20 C24 H28 110.0 109.6
C24 C23 H25 109.0 109.5
C24 C23 H26 109.0 109.5
C23 C24 H27 110.0 109.5
C23 C24 H28 110.0 109.6
N4 C15 C19 110.3 109.6
N4 C15 H10 108.8 109.5
C16 C15 C19 111.1 109.0
C16 C15 H10 108.2 109.5
C17 C16 H15 109.5 109.5
C17 C16 H16 109.5 109.5
C16 C17 H17 109.1 109.5
C16 C17 H18 109.1 109.5
C15 C19 C18 109.0 109.2
C19 C15 H10 108.1 109.5
C15 C19 H21 109.6 109.5
C15 C19 H22 109.6 109.5
C19 C18 H19 109.1 109.5
C19 C18 H20 109.1 109.5
C17 O C18 110.3 114.1
O C18 H19 109.1 109.5
O C18 H20 109.1 109.5
H4 C11 H5 109.5 109.8
H6 C12 H7 109.5 109.6
H8 C13 H9 109.5 109.3
H11 C H12 109.5 109.5
H11 C H13 109.4 109.5
H12 C H13 109.5 109.4
H15 C16 H16 109.5 109.5
H17 C17 H18 109.5 109.5
H19 C18 H20 109.4 109.5
H21 C19 H22 109.5 109.6
H23 C22 H24 109.5 110.0
H25 C23 H26 109.5 109.5
H27 C24 H28 109.5 109.7
H29 C26 H30 109.5 109.5
H29 C26 H31 109.5 109.5
H30 C26 H31 109.4 109.4

Torsion Angles for 9UD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C N N1 C3 181.0 180.0
N1 N C C1 179.0 179.9
C N C1 C2 178.6 179.9
C N C1 H14 358.6 360.0
C N N1 C1 180.9 180.1
N N1 C3 C2 0.3 0.0
N N1 C3 H32 180.3 180.0
N1 N C1 C2 359.6 0.0
N1 N C1 H14 179.6 180.0
C3 N1 N C1 0.1 360.0
C1 N N1 C3 0.1 360.0
C2 C1 N H14 180.0 180.0
N1 C3 C2 H32 180.0 180.0
C3 C2 C1 H14 180.5 180.0
N1 C3 C2 C1 359.4 360.0
N C1 C2 H14 180.0 180.0
C13 C6 C5 H1 0.9 359.6
C13 C12 C11 H4 56.1 177.1
C13 C12 C11 H5 176.2 56.3
H6 C12 C13 H7 239.7 120.3
C6 C5 C4 C9 359.5 0.0
C5 C6 C7 N2 179.6 180.3
C5 C6 C7 C8 359.6 0.2
C5 C4 C9 C8 0.6 0.1
C5 C4 C9 C10 181.2 180.1
C7 C6 C5 H1 180.4 179.9
C8 C7 C6 N2 180.0 179.9
C6 C7 N2 C14 167.2 166.3
C6 C7 C8 H2 180.5 179.8
C4 C9 C8 H2 179.4 180.0
C4 C9 C10 F1 308.4 160.7
C4 C9 C10 F 192.0 40.6
C4 C9 C10 H3 69.4 280.6
C12 C11 N2 C14 225.4 224.8
H4 C11 C12 H5 239.9 120.8
C7 N2 C11 C14 181.4 180.0
C11 N2 C14 C21 308.5 94.8
C11 N2 C14 N3 130.1 274.8
C6 C7 N2 C8 180.0 179.9
C11 N2 C7 C14 178.6 180.0
N2 C7 C8 H2 0.5 359.7
C7 N2 C14 C21 127.0 274.9
C7 N2 C14 N3 308.6 94.8
C6 C7 C8 N2 180.0 180.1
C4 C9 C8 C7 359.3 360.0
C8 C7 N2 C14 347.2 346.4
C9 C8 C7 H2 180.0 180.0
C4 C9 C8 C10 180.6 180.1
C7 C8 C9 H2 180.0 180.0
C4 C9 C10 C8 179.4 179.9
C10 C9 C8 H2 358.8 359.9
F C10 C9 F1 243.6 240.0
F1 C10 C9 H3 239.0 240.0
F C10 C9 H3 122.6 120.0
C22 N5 C25 C26 4.2 354.7
N5 C25 C26 O1 181.5 180.1
N2 C14 C21 C20 182.1 179.8
N2 C14 N3 N4 178.1 180.0
C9 C10 F1 F 241.1 240.0
C9 C10 F1 H3 119.5 120.0
F C10 F1 H3 238.4 240.0
C9 C10 F F1 117.1 120.0
C9 C10 F H3 238.7 240.0
F1 C10 F H3 121.6 120.0
C22 C21 C20 C24 358.0 0.6
C26 C25 N5 C22 4.2 354.7
C22 N5 C25 O1 185.8 174.8
C22 N5 C23 H25 184.2 175.6
C22 N5 C23 H26 303.6 55.4
H23 C22 N5 H24 120.3 121.2
C26 C25 N5 O1 178.5 179.9
C22 N5 C25 C23 175.7 180.0
C25 N5 C22 H23 20.7 104.9
C25 N5 C22 H24 260.4 343.7
C25 N5 C23 H25 0.3 355.6
C25 N5 C23 H26 119.7 235.4
C26 C25 O1 N5 181.6 180.1
N2 C14 C21 N3 181.5 180.0
C21 C14 N3 N4 359.5 360.0
C14 C21 C20 C24 179.2 180.4
N2 C14 N3 C21 178.6 180.0
C14 N3 N4 C15 179.0 180.2
C21 C20 C24 C23 18.1 342.0
C21 C20 C24 H27 137.7 101.8
C21 C20 C24 H28 258.4 222.1
C22 N5 C23 C25 183.9 180.0
C23 N5 C22 H23 196.4 284.9
C23 N5 C22 H24 76.1 163.7
C24 C23 N5 H25 239.7 119.9
C24 C23 N5 H26 120.3 240.1
N5 C23 C24 H27 195.0 285.5
N5 C23 C24 H28 74.4 165.2
H25 C23 N5 H26 240.6 120.2
N3 N4 C15 C19 284.3 300.0
N3 N4 C15 H10 165.9 179.8
C14 C21 C20 N4 359.5 0.2
C20 N4 C15 H10 344.5 359.8
C20 C24 C23 H25 194.4 165.3
C20 C24 C23 H26 75.0 285.4
C23 C24 C20 H27 240.3 240.2
C23 C24 C20 H28 119.7 119.8
H27 C24 C20 H28 239.4 239.6
C22 N5 C23 C24 63.9 295.5
N5 C23 C24 H25 120.3 240.0
N5 C23 C24 H26 239.7 119.9
C20 C24 C23 H27 119.7 119.8
C20 C24 C23 H28 240.3 240.2
H25 C23 C24 H26 119.4 239.9
H27 C24 C23 H28 120.6 120.4
C16 C15 N4 C19 123.0 119.6
C16 C15 N4 H10 241.5 239.8
N4 C15 C19 C18 174.9 176.9
C19 C15 N4 H10 118.5 120.1
N4 C15 C19 H21 294.8 296.9
N4 C15 C19 H22 54.9 57.0
N4 C15 C16 C19 237.5 240.0
N4 C15 C16 H10 118.9 120.2
C16 C15 C19 C18 52.4 56.9
C19 C15 C16 H10 241.4 240.2
C16 C15 C19 H21 172.3 176.9
C16 C15 C19 H22 292.5 297.0
C17 C16 C15 C19 307.4 303.1
C17 C16 C15 H10 66.0 62.9
C16 C17 O C18 296.6 298.9
H15 C16 C17 H16 120.1 120.1
H17 C17 C16 H18 240.4 120.0
N4 C15 C19 H10 241.1 239.8
C16 C15 C19 H10 118.7 119.8
C15 C19 C18 H19 62.8 182.5
C15 C19 C18 H20 182.4 62.4
H21 C19 C15 H22 239.8 239.8
C18 C19 C15 H10 293.8 297.1
C15 C19 C18 H21 119.9 120.0
C15 C19 C18 H22 240.1 240.1
O C18 C19 H19 239.7 120.0
O C18 C19 H20 120.2 240.0
H19 C18 C19 H20 240.5 120.0
C17 O C18 H19 303.2 181.1
C17 O C18 H20 183.7 301.1
C15 C19 C18 O 302.6 302.5
C19 C18 O H19 120.3 240.0
C19 C18 O H20 239.8 120.0
H19 C18 O H20 119.5 240.0
H1 C5 C6 C7 180.4 179.9
H1 C5 C4 C9 179.5 180.0
H2 C8 C7 N2 0.5 359.7
C9 C10 H3 F1 241.1 240.0
C9 C10 H3 F 122.2 120.0
F C10 H3 F1 118.9 120.0
C12 C11 H4 H5 120.1 239.1
H4 C11 N2 C14 105.4 344.4
C12 C11 H5 H4 239.8 120.8
H5 C11 N2 C14 345.3 105.1
C13 C12 H6 H7 120.4 239.6
H6 C12 C11 H4 296.3 297.0
H6 C12 C11 H5 56.4 176.2
C13 C12 H7 H6 239.6 120.3
H7 C12 C11 H4 176.0 57.2
H7 C12 C11 H5 296.0 296.4
H8 C13 C12 H6 48.9 171.3
H8 C13 C12 H7 169.2 51.0
H9 C13 C12 H6 289.7 51.8
H9 C13 C12 H7 50.0 291.5
N4 C15 H10 C19 119.8 120.2
C16 C15 H10 C19 239.5 240.5
H10 C15 C19 C18 293.8 297.1
H10 C15 C19 H21 53.7 57.0
H10 C15 C19 H22 173.8 177.2
H11 C N C1 181.0 270.0
H12 C H11 H13 120.0 120.0
H12 C N C1 301.0 30.0
H11 C H12 H13 240.0 240.0
H13 C N C1 61.0 150.0
H11 C H13 H12 120.0 120.0
N C1 H14 C2 180.0 180.0
H15 C16 C15 C19 67.4 63.0
H15 C16 C15 H10 186.0 182.8
C17 C16 H15 H16 240.0 239.9
H15 C16 C17 H17 57.9 177.7
H15 C16 C17 H18 177.4 57.7
H16 C16 C15 C19 187.5 183.1
H16 C16 C15 H10 306.1 302.9
C17 C16 H16 H15 120.0 120.1
H16 C16 C17 H17 297.8 57.5
H16 C16 C17 H18 57.4 297.5
H17 C17 C16 H15 57.9 177.7
H17 C17 C16 H16 297.8 57.5
C16 C17 H17 H18 119.3 240.0
H17 C17 O C18 176.4 58.9
H18 C17 C16 H15 177.4 57.7
H18 C17 C16 H16 57.4 297.5
C16 C17 H18 H17 240.7 120.0
H18 C17 O C18 56.8 178.9
C19 C18 H19 H20 119.3 240.0
O C18 H19 H20 240.7 120.0
C19 C18 H20 H19 240.7 120.0
O C18 H20 H19 119.3 240.0
C15 C19 H21 C18 240.4 240.3
H21 C19 C15 H10 53.7 57.0
C15 C19 H21 H22 120.2 120.1
H21 C19 C18 H19 302.9 62.5
H21 C19 C18 H20 62.5 302.5
C15 C19 H22 C18 119.6 119.7
H22 C19 C15 H10 173.8 177.2
C15 C19 H22 H21 239.8 239.8
H22 C19 C18 H19 182.8 302.3
H22 C19 C18 H20 302.3 182.3
H23 C22 N5 C25 20.7 104.9
H23 C22 N5 C23 196.4 284.9
N5 C22 H23 H24 239.5 238.9
H24 C22 N5 C25 260.4 343.7
H24 C22 N5 C23 76.1 163.7
N5 C22 H24 H23 120.5 121.1
N5 C23 H25 H26 119.1 239.8
C24 C23 H25 H26 240.9 120.0
H25 C23 C24 H27 74.7 45.5
H25 C23 C24 H28 314.1 285.2
N5 C23 H26 H25 240.9 120.2
C24 C23 H26 H25 119.1 239.9
H26 C23 C24 H27 315.3 165.6
H26 C23 C24 H28 194.7 45.2
C20 C24 H27 C23 241.8 240.7
C20 C24 H27 H28 120.9 120.3
H27 C24 C23 H25 74.7 45.5
H27 C24 C23 H26 315.3 165.6
C23 C24 H27 H28 239.1 239.7
C20 C24 H28 C23 118.2 119.4
C20 C24 H28 H27 239.1 239.7
H28 C24 C23 H25 314.1 285.2
H28 C24 C23 H26 194.7 45.2
C23 C24 H28 H27 120.9 120.3
H29 C26 C25 N5 181.5 2.4
H29 C26 C25 O1 360.0 182.3
H30 C26 H29 H31 119.9 120.0
H30 C26 C25 N5 301.6 122.5
H30 C26 C25 O1 120.0 302.4
H29 C26 H30 H31 240.0 239.9
H31 C26 C25 N5 61.5 242.3
H31 C26 C25 O1 240.0 62.3
H29 C26 H31 H30 120.0 120.1
N1 C3 H32 C2 180.0 180.0