Atom Nomenclature for 9SZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9SZ

Atom Name (V3) Atom Name (V2)
OAC O1
PAB P1
OAD O2
OAA O3
OAE O4
CAF C1
CAG C2
CBK C3
CBJ C4
CBL C5
CBM C6
CBN C7
CBT C8
CBS C9
CBU C10
CBV C11
CBW C12
CBX C13
CBY C14
CBZ C15
CBR C16
CBO C17
CBP C18
CBQ C19
CBI C20
CAH C21
CAI C22
OAJ O5
PAK P2
OAM O6
OAN O7
OAL O8
CAO C23
CAP C24
CAQ C25
CAR C26
CAS C27
CAT C28
CAY C29
CAX C30
CAW C31
CAZ C32
CBA C33
CBH C34
CBG C35
CBF C36
CBE C37
CBD C38
CBC C39
CBB C40
CAV C41
CAU C42
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32