PDB Chemical Component 9SG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9SG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1A |
C1 |
1.269 |
1.208 |
| C11 |
C10 |
1.504 |
1.506 |
| O1B |
C1 |
1.263 |
1.343 |
| C1 |
C2 |
1.546 |
1.507 |
| N5 |
C10 |
1.339 |
1.348 |
| N5 |
C5 |
1.471 |
1.465 |
| C4 |
C5 |
1.523 |
1.532 |
| C4 |
C3 |
1.557 |
1.533 |
| C10 |
O10 |
1.206 |
1.213 |
| O8 |
C8 |
1.468 |
1.429 |
| C5 |
C6 |
1.540 |
1.531 |
| C6 |
C7 |
1.528 |
1.530 |
| C6 |
O6 |
1.440 |
1.429 |
| C3 |
C2 |
1.569 |
1.530 |
| C3 |
FAI |
1.398 |
1.399 |
| C2 |
O6 |
1.435 |
1.429 |
| C2 |
FAJ |
1.348 |
1.399 |
| C7 |
C8 |
1.545 |
1.529 |
| C7 |
O7 |
1.423 |
1.430 |
| C8 |
C9 |
1.521 |
1.530 |
| C9 |
O9 |
1.425 |
1.429 |
| C11 |
H111 |
1.100 |
1.091 |
| C11 |
H113 |
1.100 |
1.090 |
| C11 |
H112 |
1.100 |
1.090 |
| N5 |
HN5 |
1.000 |
0.970 |
| C5 |
H5 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.089 |
| C4 |
H7A |
1.100 |
1.090 |
| C3 |
H32 |
1.100 |
1.090 |
| C6 |
H6 |
1.100 |
1.090 |
| O1B |
HO1B |
0.949 |
0.967 |
| C7 |
H7 |
1.100 |
1.090 |
| O7 |
HO7 |
0.950 |
0.966 |
| C8 |
H8 |
1.100 |
1.090 |
| O8 |
HO8 |
0.950 |
0.967 |
| C9 |
H92 |
1.100 |
1.090 |
| C9 |
H91 |
1.100 |
1.090 |
| O9 |
HO9 |
0.950 |
0.966 |
Bond Angles for 9SG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N5 |
C5 |
C6 |
109.9 |
109.5 |
| C5 |
N5 |
HN5 |
117.9 |
120.0 |
| N5 |
C5 |
H5 |
110.6 |
109.5 |
| C4 |
C5 |
C6 |
106.3 |
109.2 |
| C4 |
C5 |
H5 |
109.9 |
109.6 |
| C4 |
C3 |
C2 |
113.9 |
109.2 |
| C4 |
C3 |
FAI |
110.6 |
109.5 |
| C3 |
C4 |
H4 |
109.3 |
109.5 |
| C3 |
C4 |
H7A |
109.3 |
109.5 |
| C4 |
C3 |
H32 |
106.8 |
109.5 |
| O8 |
C8 |
C9 |
110.7 |
109.5 |
| O8 |
C8 |
H8 |
107.6 |
109.5 |
| C5 |
C6 |
C7 |
118.0 |
109.5 |
| C5 |
C6 |
O6 |
111.9 |
109.4 |
| C6 |
C5 |
H5 |
109.7 |
109.5 |
| C5 |
C6 |
H6 |
108.0 |
109.4 |
| O6 |
C6 |
C7 |
101.0 |
109.5 |
| C6 |
C7 |
C8 |
111.5 |
109.5 |
| C6 |
C7 |
O7 |
107.3 |
109.4 |
| C7 |
C6 |
H6 |
108.2 |
109.4 |
| C6 |
C7 |
H7 |
108.8 |
109.5 |
| O6 |
C6 |
H6 |
109.3 |
109.5 |
| FAI |
C3 |
C2 |
109.7 |
109.5 |
| C3 |
C2 |
O6 |
105.6 |
109.5 |
| C3 |
C2 |
FAJ |
111.1 |
109.5 |
| C2 |
C3 |
H32 |
106.7 |
109.6 |
| FAI |
C3 |
H32 |
108.8 |
109.6 |
| O7 |
C7 |
C8 |
110.4 |
109.5 |
| C7 |
C8 |
C9 |
110.2 |
109.5 |
| C8 |
C7 |
H7 |
108.6 |
109.5 |
| C7 |
C8 |
H8 |
106.8 |
109.5 |
| O7 |
C7 |
H7 |
110.2 |
109.4 |
| C7 |
O7 |
HO7 |
109.5 |
114.0 |
| C8 |
C9 |
O9 |
107.3 |
109.5 |
| C9 |
C8 |
H8 |
107.0 |
109.4 |
| C8 |
C9 |
H92 |
110.0 |
109.5 |
| C8 |
C9 |
H91 |
110.0 |
109.5 |
| O9 |
C9 |
H92 |
110.0 |
109.5 |
| O9 |
C9 |
H91 |
110.0 |
109.4 |
| C9 |
O9 |
HO9 |
109.5 |
114.0 |
| H111 |
C11 |
H113 |
109.5 |
109.4 |
| H111 |
C11 |
H112 |
109.5 |
109.5 |
| H113 |
C11 |
H112 |
109.4 |
109.5 |
| H4 |
C4 |
H7A |
109.5 |
109.6 |
| H92 |
C9 |
H91 |
109.5 |
109.4 |
Torsion Angles for 9SG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
C3 |
H32 |
314.8 |
302.5 |
| C4 |
C5 |
N5 |
C6 |
117.0 |
119.7 |
| C4 |
C5 |
N5 |
H5 |
238.2 |
239.8 |
| N5 |
C5 |
C6 |
C7 |
294.8 |
297.5 |
| N5 |
C5 |
C6 |
O6 |
178.2 |
177.5 |
| C6 |
C5 |
N5 |
H5 |
121.2 |
120.1 |
| N5 |
C5 |
C6 |
H6 |
57.7 |
57.5 |
| N5 |
C5 |
C4 |
C6 |
240.8 |
240.1 |
| C4 |
C5 |
N5 |
HN5 |
68.3 |
94.7 |
| N5 |
C5 |
C4 |
H5 |
122.2 |
120.2 |
| C4 |
C5 |
C6 |
C7 |
175.2 |
177.6 |
| C4 |
C5 |
C6 |
O6 |
58.6 |
57.6 |
| C6 |
C5 |
C4 |
H5 |
241.4 |
240.1 |
| C4 |
C5 |
C6 |
H6 |
298.2 |
297.6 |
| C3 |
C4 |
C5 |
C6 |
305.4 |
303.0 |
| C3 |
C4 |
C5 |
H5 |
63.9 |
62.9 |
| FAI |
C3 |
C4 |
C2 |
235.9 |
240.1 |
| C4 |
C3 |
C2 |
O6 |
308.6 |
302.4 |
| C4 |
C3 |
C2 |
FAJ |
193.4 |
182.4 |
| C2 |
C3 |
C4 |
H32 |
242.4 |
240.1 |
| FAI |
C3 |
C4 |
H32 |
118.3 |
120.2 |
| H4 |
C4 |
C3 |
H7A |
119.7 |
120.3 |
| C7 |
C8 |
O8 |
C9 |
235.0 |
240.0 |
| O8 |
C8 |
C7 |
H7 |
93.2 |
60.0 |
| C7 |
C8 |
O8 |
H8 |
118.3 |
120.0 |
| O8 |
C8 |
C9 |
O9 |
173.5 |
65.0 |
| C9 |
C8 |
O8 |
H8 |
243.3 |
240.0 |
| O8 |
C8 |
C9 |
H92 |
293.2 |
185.0 |
| O8 |
C8 |
C9 |
H91 |
53.9 |
305.0 |
| C6 |
C5 |
N5 |
HN5 |
311.4 |
335.0 |
| N5 |
C5 |
C6 |
H5 |
238.2 |
239.9 |
| C4 |
C5 |
C6 |
H5 |
118.7 |
120.0 |
| O6 |
C6 |
C5 |
C7 |
243.4 |
240.0 |
| C5 |
C6 |
C7 |
C8 |
189.1 |
185.0 |
| C5 |
C6 |
C7 |
O7 |
310.1 |
305.0 |
| C7 |
C6 |
C5 |
H6 |
237.0 |
240.0 |
| C5 |
C6 |
C7 |
H7 |
69.3 |
64.9 |
| O6 |
C6 |
C5 |
H6 |
120.4 |
120.0 |
| C5 |
C6 |
C7 |
O6 |
237.7 |
240.1 |
| C7 |
C6 |
C5 |
H5 |
56.5 |
57.6 |
| C5 |
C6 |
C7 |
H6 |
122.9 |
120.0 |
| O6 |
C6 |
C7 |
H6 |
245.2 |
239.9 |
| O7 |
C7 |
C6 |
C8 |
121.0 |
120.0 |
| C6 |
C7 |
C8 |
C9 |
208.0 |
180.0 |
| C8 |
C7 |
C6 |
H7 |
119.8 |
120.1 |
| C6 |
C7 |
C8 |
H8 |
92.1 |
60.0 |
| O7 |
C7 |
C6 |
H7 |
240.8 |
240.0 |
| C6 |
C7 |
O7 |
HO7 |
180.0 |
300.0 |
| C5 |
C6 |
O6 |
C7 |
126.4 |
120.0 |
| O6 |
C6 |
C5 |
H5 |
299.9 |
297.6 |
| C5 |
C6 |
O6 |
H6 |
240.3 |
240.0 |
| O6 |
C6 |
C7 |
C8 |
311.4 |
304.9 |
| O6 |
C6 |
C7 |
O7 |
72.4 |
64.9 |
| C7 |
C6 |
O6 |
H6 |
113.9 |
120.0 |
| O6 |
C6 |
C7 |
H7 |
191.6 |
184.9 |
| C3 |
C2 |
O6 |
C6 |
56.3 |
61.2 |
| C4 |
C3 |
C2 |
FAI |
235.4 |
240.1 |
| C2 |
C3 |
C4 |
H4 |
294.7 |
297.1 |
| C2 |
C3 |
C4 |
H7A |
175.0 |
176.8 |
| C4 |
C3 |
C2 |
H32 |
117.6 |
119.8 |
| FAI |
C3 |
C2 |
H32 |
242.2 |
239.8 |
| C4 |
C3 |
FAI |
C2 |
126.5 |
119.7 |
| FAI |
C3 |
C4 |
H4 |
170.6 |
177.2 |
| FAI |
C3 |
C4 |
H7A |
50.9 |
56.9 |
| C4 |
C3 |
FAI |
H32 |
242.9 |
239.9 |
| FAI |
C3 |
C2 |
O6 |
73.2 |
62.3 |
| FAI |
C3 |
C2 |
FAJ |
318.0 |
302.3 |
| C2 |
C3 |
FAI |
H32 |
116.4 |
120.2 |
| C2 |
O6 |
C6 |
C7 |
169.7 |
178.9 |
| C2 |
O6 |
C6 |
H6 |
55.7 |
58.8 |
| C3 |
C2 |
O6 |
FAJ |
241.7 |
240.0 |
| O6 |
C2 |
C3 |
H32 |
191.0 |
182.5 |
| C3 |
C2 |
FAJ |
O6 |
114.6 |
120.0 |
| FAJ |
C2 |
C3 |
H32 |
75.7 |
62.5 |
| O8 |
C8 |
C7 |
C9 |
125.3 |
120.0 |
| O8 |
C8 |
C7 |
H8 |
241.2 |
239.9 |
| C6 |
C7 |
C8 |
O7 |
119.2 |
120.0 |
| C8 |
C7 |
C6 |
H6 |
66.2 |
65.0 |
| C6 |
C7 |
C8 |
H7 |
240.1 |
240.0 |
| O7 |
C7 |
C8 |
H7 |
120.9 |
120.0 |
| C8 |
C7 |
O7 |
HO7 |
301.7 |
60.0 |
| C7 |
C8 |
C9 |
O9 |
300.7 |
185.0 |
| C9 |
C8 |
C7 |
H8 |
115.9 |
119.9 |
| C7 |
C8 |
C9 |
H92 |
60.4 |
305.1 |
| C7 |
C8 |
C9 |
H91 |
181.1 |
65.0 |
| C6 |
C7 |
O7 |
C8 |
238.3 |
240.0 |
| O7 |
C7 |
C6 |
H6 |
187.2 |
185.0 |
| C6 |
C7 |
O7 |
H7 |
118.3 |
120.0 |
| O7 |
C7 |
C8 |
C9 |
88.8 |
60.0 |
| C8 |
C7 |
O7 |
H7 |
240.0 |
240.0 |
| O7 |
C7 |
C8 |
H8 |
332.9 |
300.1 |
| O8 |
C8 |
C9 |
H8 |
117.1 |
120.0 |
| C9 |
C8 |
C7 |
H7 |
327.9 |
300.0 |
| C7 |
C8 |
C9 |
H8 |
244.3 |
240.0 |
| O9 |
C9 |
C8 |
H92 |
240.3 |
240.0 |
| O9 |
C9 |
C8 |
H91 |
119.7 |
120.0 |
| C8 |
C9 |
O9 |
HO9 |
180.0 |
180.0 |
| H92 |
C9 |
C8 |
H91 |
239.3 |
240.0 |
| O9 |
C9 |
C8 |
H8 |
56.5 |
305.0 |
| C8 |
C9 |
O9 |
H92 |
119.7 |
120.1 |
| C8 |
C9 |
O9 |
H91 |
240.4 |
240.0 |
| H92 |
C9 |
O9 |
H91 |
120.7 |
119.9 |
| H113 |
C11 |
H111 |
H112 |
119.9 |
120.0 |
| H111 |
C11 |
H113 |
H112 |
240.0 |
240.0 |
| H111 |
C11 |
H112 |
H113 |
120.0 |
119.9 |
| HN5 |
N5 |
C5 |
C6 |
311.4 |
335.0 |
| HN5 |
N5 |
C5 |
H5 |
190.1 |
214.9 |
| N5 |
C5 |
H5 |
C6 |
121.4 |
120.1 |
| H5 |
C5 |
N5 |
HN5 |
190.1 |
214.9 |
| C4 |
C5 |
H5 |
C6 |
243.5 |
240.3 |
| H5 |
C5 |
C6 |
C7 |
56.5 |
57.6 |
| H5 |
C5 |
C6 |
O6 |
299.9 |
297.6 |
| H5 |
C5 |
C6 |
H6 |
179.5 |
177.6 |
| H4 |
C4 |
C5 |
C6 |
65.5 |
62.9 |
| H4 |
C4 |
C5 |
H5 |
184.1 |
182.8 |
| H4 |
C4 |
C3 |
C2 |
294.7 |
297.1 |
| H4 |
C4 |
C3 |
FAI |
170.6 |
177.2 |
| C3 |
C4 |
H4 |
H7A |
240.4 |
239.8 |
| H4 |
C4 |
C3 |
H32 |
52.3 |
57.0 |
| H7A |
C4 |
C5 |
C6 |
185.2 |
183.2 |
| H7A |
C4 |
C5 |
H5 |
303.8 |
303.1 |
| H7A |
C4 |
C3 |
C2 |
175.0 |
176.8 |
| H7A |
C4 |
C3 |
FAI |
50.9 |
56.9 |
| C3 |
C4 |
H7A |
H4 |
119.6 |
120.2 |
| H7A |
C4 |
C3 |
H32 |
292.6 |
296.7 |
| C4 |
C3 |
H32 |
C2 |
237.8 |
240.3 |
| C4 |
C3 |
H32 |
FAI |
119.5 |
120.1 |
| H32 |
C3 |
C4 |
H4 |
52.3 |
57.0 |
| H32 |
C3 |
C4 |
H7A |
292.6 |
296.7 |
| FAI |
C3 |
H32 |
C2 |
118.3 |
120.2 |
| H32 |
C3 |
C2 |
O6 |
191.0 |
182.5 |
| H32 |
C3 |
C2 |
FAJ |
75.7 |
62.5 |
| C5 |
C6 |
H6 |
C7 |
231.3 |
240.0 |
| C5 |
C6 |
H6 |
O6 |
122.0 |
120.0 |
| H6 |
C6 |
C5 |
H5 |
179.5 |
177.6 |
| O6 |
C6 |
H6 |
C7 |
109.2 |
120.0 |
| H6 |
C6 |
C7 |
C8 |
66.2 |
65.0 |
| H6 |
C6 |
C7 |
O7 |
187.2 |
185.0 |
| H6 |
C6 |
C7 |
H7 |
306.4 |
305.0 |
| C6 |
C7 |
H7 |
C8 |
121.6 |
120.0 |
| C6 |
C7 |
H7 |
O7 |
242.6 |
240.0 |
| H7 |
C7 |
C6 |
H6 |
306.4 |
305.0 |
| O7 |
C7 |
H7 |
C8 |
239.0 |
240.0 |
| H7 |
C7 |
C8 |
C9 |
327.9 |
300.0 |
| H7 |
C7 |
C8 |
H8 |
212.0 |
180.1 |
| H7 |
C7 |
O7 |
HO7 |
61.7 |
180.1 |
| HO7 |
O7 |
C7 |
C8 |
301.7 |
60.0 |
| HO7 |
O7 |
C7 |
H7 |
61.7 |
180.1 |
| O8 |
C8 |
H8 |
C9 |
240.9 |
240.0 |
| C7 |
C8 |
H8 |
C9 |
118.0 |
120.0 |
| H8 |
C8 |
C7 |
H7 |
212.0 |
180.1 |
| H8 |
C8 |
C9 |
O9 |
56.5 |
305.0 |
| H8 |
C8 |
C9 |
H92 |
176.1 |
65.0 |
| H8 |
C8 |
C9 |
H91 |
296.8 |
185.0 |
| HO8 |
O8 |
C8 |
C9 |
305.0 |
60.0 |
| HO8 |
O8 |
C8 |
H8 |
61.7 |
179.9 |
| C8 |
C9 |
H92 |
O9 |
242.0 |
239.9 |
| H92 |
C9 |
C8 |
H8 |
176.1 |
65.0 |
| C8 |
C9 |
H92 |
H91 |
121.0 |
120.0 |
| O9 |
C9 |
H92 |
H91 |
239.0 |
240.1 |
| H92 |
C9 |
O9 |
HO9 |
60.4 |
60.0 |
| C8 |
C9 |
H91 |
O9 |
118.0 |
120.0 |
| H91 |
C9 |
C8 |
H8 |
296.8 |
185.0 |
| C8 |
C9 |
H91 |
H92 |
239.0 |
240.0 |
| O9 |
C9 |
H91 |
H92 |
121.0 |
120.0 |
| H91 |
C9 |
O9 |
HO9 |
299.7 |
300.0 |
| HO9 |
O9 |
C9 |
H92 |
60.4 |
60.0 |
| HO9 |
O9 |
C9 |
H91 |
299.7 |
300.0 |