Atom Nomenclature for 9SG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9SG

Atom Name (V3) Atom Name (V2)
O10 OAB
C10 CAN
C11 CAA
N5 NAL
C5 CAT
C4 CAR
C3 CAS
FAI FAI
C6 CAU
O6 OAM
C2 CAV
FAJ FAJ
C1 CAO
O1A OAE
O1B OAC
C7 CAQ
O7 OAG
C8 CAP
O8 OAF
C9 CAK
O9 OAD
H111 H1
H113 H2
H112 H3
HN5 H4
H5 H5
H4 H6
H7A H7
H32 H8
H6 H9
HO1B H10
H7 H11
HO7 H12
H8 H13
HO8 H14
H92 H15
H91 H16
HO9 H17