Atom Nomenclature for 9S3

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9S3

Atom Name (V3) Atom Name (V2)
O O
C17 C17
C18 C18
N2 N2
C2 C2
C1 C1
C16 C16
C11 C11
C4 C4
N1 N1
C5 C5
C10 C10
C9 C9
C8 C8
C7 C7
C6 C6
C3 C3
C15 C15
C14 C14
C13 C13
C12 C12
C19 C19
C30 C30
C29 C29
C22 C22
C21 C21
C20 C20
C23 C23
N3 N3
C28 C28
C27 C27
C26 C26
C25 C25
C24 C24
H181 H181
H182 H182
H183 H183
H2 H2
H11C H11C
H12C H12C
H13C H13C
H31C H31C
H32C H32C
H15 H15
H4 H4
H12 H12
H1 H1
H10 H10
H6 H6
H9 H9
H8 H8
H7 H7
H14 H14
H30 H30
H20 H20
H29 H29
H21 H21
H231 H231
H232 H232
H281 H281
H282 H282
H241 H241
H242 H242
H271 H271
H272 H272
H261 H261
H262 H262
H251 H251
H252 H252