Atom Nomenclature for 9S0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9S0

Atom Name (V3) Atom Name (V2)
O1 O1
O2 O2
C11 C1
C12 C2
C13 C3
C14 C4
C15 C5
C19 C6
C18 C7
C17 C8
C16 C9
N7 N1
N8 N2
N9 N3
C20 C10
C21 C11
C22 C12
N6 N4
C26 C13
C25 C14
C24 C15
C23 C16
O3 O3
O4 O4
O5 O5
N10 N5
C27 C17
H5 H1
H6 H2
H3 H3
H4 H4
H7 H5
H2 H6
H13 H7
H14 H8
H12 H9
H11 H10
H10 H11
H9 H12
H8 H13
H1 H14
H15 H15
H16 H16
H17 H17