PDB Chemical Component 9RT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9RT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C11 |
C10 |
1.370 |
1.382 |
| C11 |
N3 |
1.339 |
1.319 |
| C10 |
C9 |
1.376 |
1.387 |
| O2 |
S1 |
1.429 |
1.421 |
| N3 |
C7 |
1.335 |
1.319 |
| C9 |
C8 |
1.378 |
1.387 |
| C7 |
C8 |
1.375 |
1.382 |
| C7 |
C6 |
1.503 |
1.507 |
| N2 |
S1 |
1.609 |
1.656 |
| N2 |
C6 |
1.457 |
1.465 |
| S1 |
O1 |
1.429 |
1.421 |
| S1 |
C5 |
1.767 |
1.762 |
| C12 |
C5 |
1.382 |
1.382 |
| C12 |
C13 |
1.384 |
1.383 |
| C5 |
C4 |
1.388 |
1.383 |
| C13 |
C2 |
1.388 |
1.382 |
| C4 |
C3 |
1.383 |
1.383 |
| C2 |
C3 |
1.387 |
1.382 |
| C2 |
C1 |
1.516 |
1.507 |
| N1 |
C1 |
1.481 |
1.469 |
| N1 |
H1 |
1.000 |
1.010 |
| N1 |
H2 |
1.000 |
1.009 |
| C1 |
H4 |
1.099 |
1.091 |
| C1 |
H5 |
1.100 |
1.090 |
| C3 |
H6 |
1.080 |
1.080 |
| C4 |
H7 |
1.080 |
1.080 |
| N2 |
H8 |
1.000 |
0.970 |
| C6 |
H9 |
1.100 |
1.090 |
| C6 |
H10 |
1.100 |
1.090 |
| C8 |
H11 |
1.080 |
1.080 |
| C9 |
H12 |
1.080 |
1.080 |
| C10 |
H13 |
1.080 |
1.080 |
| C11 |
H14 |
1.080 |
1.081 |
| C12 |
H15 |
1.080 |
1.080 |
| C13 |
H16 |
1.080 |
1.079 |
Bond Angles for 9RT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
H13 |
120.8 |
120.4 |
| N3 |
C11 |
H14 |
118.5 |
119.6 |
| C10 |
C9 |
H12 |
120.3 |
120.8 |
| C9 |
C8 |
H11 |
120.7 |
120.4 |
| C7 |
C8 |
H11 |
120.7 |
120.5 |
| C7 |
C6 |
H9 |
108.6 |
109.5 |
| C7 |
C6 |
H10 |
108.6 |
109.4 |
| C6 |
N2 |
H8 |
107.2 |
120.0 |
| N2 |
C6 |
H9 |
108.6 |
109.5 |
| N2 |
C6 |
H10 |
108.6 |
109.4 |
| C13 |
C12 |
H15 |
120.4 |
120.0 |
| C12 |
C13 |
H16 |
119.3 |
120.0 |
| C5 |
C4 |
H7 |
120.2 |
120.0 |
| C4 |
C3 |
H6 |
119.4 |
120.0 |
| C2 |
C3 |
H6 |
119.5 |
120.0 |
| C2 |
C1 |
H4 |
108.1 |
109.5 |
| C2 |
C1 |
H5 |
108.1 |
109.5 |
| C1 |
N1 |
H1 |
109.5 |
111.0 |
| C1 |
N1 |
H2 |
109.5 |
111.0 |
| N1 |
C1 |
H4 |
108.1 |
109.4 |
| N1 |
C1 |
H5 |
108.1 |
109.5 |
| H1 |
N1 |
H2 |
109.5 |
111.0 |
| H4 |
C1 |
H5 |
109.5 |
109.5 |
| H9 |
C6 |
H10 |
109.5 |
109.5 |
Torsion Angles for 9RT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
C9 |
H12 |
178.6 |
180.0 |
| N3 |
C11 |
C10 |
H13 |
181.8 |
179.7 |
| C10 |
C9 |
C8 |
H11 |
181.0 |
180.0 |
| N3 |
C7 |
C8 |
H11 |
179.0 |
180.2 |
| N3 |
C7 |
C6 |
H9 |
134.7 |
154.7 |
| N3 |
C7 |
C6 |
H10 |
253.7 |
34.7 |
| C7 |
C8 |
C9 |
H11 |
180.0 |
179.9 |
| C9 |
C8 |
C7 |
H11 |
180.0 |
180.1 |
| C8 |
C7 |
C6 |
H9 |
313.6 |
335.0 |
| C8 |
C7 |
C6 |
H10 |
72.6 |
215.0 |
| C7 |
C6 |
N2 |
H8 |
81.3 |
344.9 |
| N2 |
C6 |
C7 |
H9 |
239.5 |
120.1 |
| N2 |
C6 |
C7 |
H10 |
120.5 |
240.0 |
| H9 |
C6 |
C7 |
H10 |
241.0 |
120.0 |
| C7 |
C6 |
N2 |
H9 |
120.5 |
240.0 |
| C7 |
C6 |
N2 |
H10 |
239.5 |
120.0 |
| H9 |
C6 |
N2 |
H10 |
119.0 |
240.0 |
| S1 |
C5 |
C4 |
H7 |
359.1 |
0.0 |
| C12 |
C5 |
C4 |
H7 |
182.4 |
179.9 |
| C5 |
C4 |
C3 |
H6 |
178.8 |
180.0 |
| C13 |
C2 |
C3 |
H6 |
180.2 |
180.3 |
| C13 |
C2 |
C1 |
H4 |
63.9 |
149.8 |
| C13 |
C2 |
C1 |
H5 |
182.4 |
29.8 |
| C2 |
C3 |
C4 |
H6 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H6 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
H4 |
244.1 |
330.0 |
| C3 |
C2 |
C1 |
H5 |
2.5 |
210.0 |
| C2 |
C1 |
N1 |
H1 |
180.0 |
180.0 |
| C2 |
C1 |
N1 |
H2 |
300.0 |
304.0 |
| N1 |
C1 |
C2 |
H4 |
239.2 |
120.0 |
| N1 |
C1 |
C2 |
H5 |
120.8 |
240.0 |
| H4 |
C1 |
C2 |
H5 |
241.6 |
120.0 |
| C2 |
C1 |
N1 |
H4 |
120.8 |
240.0 |
| C2 |
C1 |
N1 |
H5 |
239.2 |
120.0 |
| H1 |
N1 |
C1 |
H2 |
240.0 |
236.1 |
| H4 |
C1 |
N1 |
H5 |
118.5 |
240.0 |
| C1 |
N1 |
H1 |
H2 |
120.0 |
123.9 |
| H1 |
N1 |
C1 |
H4 |
59.2 |
300.0 |
| H1 |
N1 |
C1 |
H5 |
300.8 |
60.0 |
| C1 |
N1 |
H2 |
H1 |
240.0 |
236.1 |
| H2 |
N1 |
C1 |
H4 |
179.2 |
64.0 |
| H2 |
N1 |
C1 |
H5 |
60.8 |
184.0 |
| C2 |
C1 |
H4 |
H5 |
117.5 |
240.0 |
| H4 |
C1 |
N1 |
H1 |
59.2 |
300.0 |
| H4 |
C1 |
N1 |
H2 |
179.2 |
64.0 |
| N1 |
C1 |
H4 |
H5 |
242.4 |
120.0 |
| C2 |
C1 |
H5 |
H4 |
242.5 |
120.0 |
| H5 |
C1 |
N1 |
H1 |
300.8 |
60.0 |
| H5 |
C1 |
N1 |
H2 |
60.8 |
184.0 |
| N1 |
C1 |
H5 |
H4 |
117.6 |
240.0 |
| H7 |
C4 |
C3 |
H6 |
358.8 |
360.0 |
| H8 |
N2 |
C6 |
H9 |
320.8 |
105.0 |
| H8 |
N2 |
C6 |
H10 |
201.8 |
225.0 |
| C7 |
C6 |
H9 |
H10 |
118.4 |
240.0 |
| H9 |
C6 |
N2 |
H8 |
320.8 |
105.0 |
| N2 |
C6 |
H9 |
H10 |
241.5 |
120.0 |
| C7 |
C6 |
H10 |
H9 |
241.5 |
120.0 |
| H10 |
C6 |
N2 |
H8 |
201.8 |
225.0 |
| N2 |
C6 |
H10 |
H9 |
118.5 |
240.0 |
| H12 |
C9 |
C8 |
H11 |
1.0 |
0.1 |
| H13 |
C10 |
C9 |
H12 |
358.6 |
360.0 |
| H14 |
C11 |
C10 |
H13 |
1.8 |
0.0 |
| H15 |
C12 |
C13 |
H16 |
1.5 |
359.8 |
| H16 |
C13 |
C12 |
H15 |
1.5 |
359.8 |