PDB Chemical Component 9RA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9RA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C51 |
O53 |
1.247 |
1.215 |
| C11 |
C51 |
1.501 |
1.476 |
| C51 |
O52 |
1.243 |
1.347 |
| O52 |
HO52 |
0.949 |
0.967 |
| C12 |
C11 |
1.395 |
1.397 |
| C10 |
C11 |
1.389 |
1.397 |
| C9 |
C10 |
1.384 |
1.377 |
| C10 |
H10 |
1.080 |
1.080 |
| C13 |
C12 |
1.393 |
1.376 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
C13 |
1.389 |
1.396 |
| C13 |
H13 |
1.081 |
1.081 |
| C47 |
C14 |
1.500 |
1.482 |
| C14 |
C9 |
1.393 |
1.395 |
| C9 |
H9 |
1.080 |
1.080 |
| C48 |
C47 |
1.319 |
1.339 |
| C4 |
C47 |
1.509 |
1.484 |
| C48 |
H48 |
1.080 |
1.080 |
| C48 |
H48A |
1.080 |
1.081 |
| C5 |
C4 |
1.396 |
1.390 |
| C4 |
C3 |
1.482 |
1.394 |
| C2 |
C3 |
1.391 |
1.377 |
| C3 |
C43 |
1.506 |
1.508 |
| C43 |
H43 |
1.100 |
1.090 |
| C43 |
H43A |
1.101 |
1.090 |
| C43 |
H43B |
1.100 |
1.089 |
| C1 |
C2 |
1.392 |
1.391 |
| C2 |
H2 |
1.080 |
1.079 |
| C6 |
C5 |
1.395 |
1.388 |
| C5 |
H5 |
1.080 |
1.080 |
| C19 |
C6 |
1.514 |
1.506 |
| C6 |
C1 |
1.490 |
1.378 |
| C31 |
C19 |
1.525 |
1.529 |
| C20 |
C19 |
1.512 |
1.527 |
| C19 |
C27 |
1.528 |
1.530 |
| C27 |
H27 |
1.100 |
1.090 |
| C27 |
H27A |
1.100 |
1.090 |
| C27 |
H27B |
1.100 |
1.090 |
| C31 |
H31 |
1.100 |
1.090 |
| C31 |
H31A |
1.101 |
1.090 |
| C31 |
H31B |
1.100 |
1.091 |
| C20 |
C21 |
1.506 |
1.533 |
| C20 |
H20 |
1.100 |
1.091 |
| C20 |
H20A |
1.100 |
1.090 |
| C22 |
C21 |
1.520 |
1.527 |
| C21 |
H21 |
1.100 |
1.091 |
| C21 |
H21A |
1.100 |
1.090 |
| C39 |
C22 |
1.522 |
1.529 |
| C22 |
C1 |
1.502 |
1.506 |
| C22 |
C35 |
1.527 |
1.530 |
| C39 |
H39 |
1.100 |
1.090 |
| C39 |
H39A |
1.100 |
1.090 |
| C39 |
H39B |
1.100 |
1.089 |
| C35 |
H35 |
1.100 |
1.090 |
| C35 |
H35A |
1.100 |
1.090 |
| C35 |
H35B |
1.100 |
1.091 |
Bond Angles for 9RA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C51 |
O52 |
HO52 |
109.5 |
117.0 |
| C9 |
C10 |
H10 |
120.2 |
120.0 |
| C13 |
C12 |
H12 |
119.8 |
120.0 |
| C14 |
C13 |
H13 |
120.3 |
120.0 |
| C14 |
C9 |
H9 |
119.6 |
120.0 |
| H48 |
C48 |
H48A |
125.8 |
120.0 |
| C4 |
C3 |
C43 |
119.4 |
120.2 |
| C3 |
C43 |
H43 |
109.5 |
109.4 |
| C3 |
C43 |
H43A |
109.5 |
109.4 |
| C3 |
C43 |
H43B |
109.5 |
109.5 |
| H43 |
C43 |
H43A |
109.4 |
109.5 |
| H43 |
C43 |
H43B |
109.4 |
109.5 |
| H43A |
C43 |
H43B |
109.5 |
109.5 |
| C1 |
C2 |
H2 |
119.6 |
119.6 |
| C6 |
C5 |
H5 |
119.3 |
119.8 |
| C19 |
C6 |
C1 |
121.0 |
122.6 |
| C6 |
C1 |
C22 |
120.5 |
122.5 |
| C19 |
C27 |
H27 |
109.5 |
109.5 |
| C19 |
C27 |
H27A |
109.5 |
109.5 |
| C19 |
C27 |
H27B |
109.5 |
109.4 |
| H27 |
C27 |
H27A |
109.4 |
109.5 |
| H27 |
C27 |
H27B |
109.5 |
109.4 |
| H27A |
C27 |
H27B |
109.5 |
109.5 |
| H31 |
C31 |
H31A |
109.5 |
109.4 |
| H31 |
C31 |
H31B |
109.5 |
109.4 |
| H31A |
C31 |
H31B |
109.5 |
109.5 |
| C21 |
C20 |
H20 |
106.6 |
109.6 |
| C21 |
C20 |
H20A |
104.6 |
109.7 |
| C20 |
C21 |
H21 |
110.6 |
109.7 |
| C20 |
C21 |
H21A |
111.4 |
109.7 |
| H20 |
C20 |
H20A |
116.7 |
109.7 |
| C22 |
C21 |
H21 |
110.6 |
109.7 |
| C22 |
C21 |
H21A |
111.4 |
109.7 |
| H21 |
C21 |
H21A |
106.8 |
109.6 |
| C39 |
C22 |
C35 |
110.9 |
109.2 |
| C1 |
C22 |
C35 |
109.3 |
109.2 |
| C22 |
C35 |
H35 |
109.5 |
109.5 |
| C22 |
C35 |
H35A |
109.5 |
109.4 |
| C22 |
C35 |
H35B |
109.5 |
109.5 |
| H39 |
C39 |
H39A |
109.4 |
109.4 |
| H39 |
C39 |
H39B |
109.5 |
109.5 |
| H39A |
C39 |
H39B |
109.5 |
109.5 |
| H35 |
C35 |
H35A |
109.4 |
109.5 |
| H35 |
C35 |
H35B |
109.5 |
109.5 |
| H35A |
C35 |
H35B |
109.5 |
109.4 |
Torsion Angles for 9RA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C51 |
O52 |
HO52 |
178.8 |
180.3 |
| C14 |
C13 |
C12 |
H12 |
180.4 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
0.4 |
0.1 |
| C47 |
C14 |
C13 |
H13 |
0.5 |
360.0 |
| C47 |
C14 |
C9 |
H9 |
359.4 |
0.3 |
| C14 |
C9 |
C10 |
H10 |
179.9 |
180.0 |
| C9 |
C14 |
C13 |
H13 |
179.4 |
180.2 |
| H9 |
C9 |
C10 |
H10 |
359.9 |
359.8 |
| C4 |
C3 |
C43 |
H43 |
82.3 |
90.1 |
| C4 |
C3 |
C43 |
H43A |
202.3 |
210.0 |
| C4 |
C3 |
C43 |
H43B |
322.4 |
330.1 |
| C2 |
C3 |
C43 |
H43 |
262.4 |
270.0 |
| C2 |
C3 |
C43 |
H43A |
22.4 |
30.0 |
| C2 |
C3 |
C43 |
H43B |
142.4 |
150.0 |
| H43 |
C43 |
C3 |
H43A |
240.0 |
240.0 |
| H43 |
C43 |
C3 |
H43B |
120.0 |
120.0 |
| H43A |
C43 |
C3 |
H43B |
240.0 |
240.0 |
| C3 |
C43 |
H43 |
H43A |
120.0 |
119.9 |
| C3 |
C43 |
H43 |
H43B |
240.0 |
240.0 |
| H43A |
C43 |
H43 |
H43B |
120.0 |
120.1 |
| C3 |
C43 |
H43A |
H43 |
240.0 |
240.1 |
| C3 |
C43 |
H43A |
H43B |
120.0 |
120.0 |
| H43 |
C43 |
H43A |
H43B |
240.0 |
239.9 |
| C3 |
C43 |
H43B |
H43 |
120.0 |
120.0 |
| C3 |
C43 |
H43B |
H43A |
240.0 |
240.0 |
| H43 |
C43 |
H43B |
H43A |
120.0 |
120.1 |
| C19 |
C6 |
C5 |
H5 |
0.6 |
359.3 |
| C19 |
C6 |
C1 |
C22 |
358.6 |
0.9 |
| C6 |
C1 |
C2 |
H2 |
179.3 |
179.6 |
| C1 |
C6 |
C5 |
H5 |
179.7 |
179.7 |
| C6 |
C1 |
C22 |
C35 |
154.6 |
102.3 |
| C31 |
C19 |
C6 |
C1 |
121.4 |
102.4 |
| C31 |
C19 |
C27 |
H27 |
176.2 |
179.5 |
| C31 |
C19 |
C27 |
H27A |
296.2 |
299.5 |
| C31 |
C19 |
C27 |
H27B |
56.2 |
59.5 |
| C20 |
C19 |
C6 |
C1 |
0.7 |
342.1 |
| C20 |
C19 |
C27 |
H27 |
294.4 |
298.9 |
| C20 |
C19 |
C27 |
H27A |
54.4 |
59.0 |
| C20 |
C19 |
C27 |
H27B |
174.4 |
178.9 |
| C27 |
C19 |
C6 |
C1 |
242.4 |
221.9 |
| H27 |
C27 |
C19 |
H27A |
240.0 |
239.9 |
| H27 |
C27 |
C19 |
H27B |
120.0 |
119.9 |
| H27A |
C27 |
C19 |
H27B |
240.0 |
240.0 |
| C19 |
C27 |
H27 |
H27A |
120.0 |
120.1 |
| C19 |
C27 |
H27 |
H27B |
240.0 |
240.1 |
| H27A |
C27 |
H27 |
H27B |
120.0 |
120.0 |
| C19 |
C27 |
H27A |
H27 |
240.0 |
240.0 |
| C19 |
C27 |
H27A |
H27B |
120.0 |
120.0 |
| H27 |
C27 |
H27A |
H27B |
240.0 |
240.0 |
| C19 |
C27 |
H27B |
H27 |
120.0 |
120.0 |
| C19 |
C27 |
H27B |
H27A |
240.0 |
240.0 |
| H27 |
C27 |
H27B |
H27A |
120.0 |
120.0 |
| H31A |
C31 |
H31 |
H31B |
120.0 |
120.0 |
| H31 |
C31 |
H31A |
H31B |
240.0 |
240.0 |
| H31 |
C31 |
H31B |
H31A |
120.0 |
119.9 |
| H20 |
C20 |
C21 |
H20A |
124.2 |
120.5 |
| C22 |
C21 |
C20 |
H21 |
240.0 |
240.3 |
| C22 |
C21 |
C20 |
H21A |
121.3 |
119.8 |
| H21 |
C21 |
C20 |
H21A |
241.3 |
239.5 |
| C21 |
C20 |
H20 |
H20A |
243.6 |
239.5 |
| H20 |
C20 |
C21 |
H21 |
64.1 |
290.1 |
| H20 |
C20 |
C21 |
H21A |
182.7 |
50.6 |
| C21 |
C20 |
H20A |
H20 |
117.5 |
120.5 |
| H20A |
C20 |
C21 |
H21 |
299.9 |
169.6 |
| H20A |
C20 |
C21 |
H21A |
58.6 |
290.1 |
| C6 |
C1 |
C22 |
C21 |
32.0 |
342.1 |
| C22 |
C21 |
C20 |
H20 |
304.1 |
170.4 |
| C22 |
C21 |
C20 |
H20A |
179.9 |
49.9 |
| C20 |
C21 |
C22 |
H21 |
120.0 |
119.7 |
| C20 |
C21 |
C22 |
H21A |
238.7 |
240.2 |
| H21 |
C21 |
C22 |
H21A |
118.7 |
120.5 |
| H21 |
C21 |
C20 |
H20 |
64.1 |
290.1 |
| H21 |
C21 |
C20 |
H20A |
299.9 |
169.6 |
| C20 |
C21 |
H21 |
H21A |
121.4 |
120.5 |
| C22 |
C21 |
H21 |
H21A |
238.6 |
239.5 |
| H21A |
C21 |
C20 |
H20 |
182.7 |
50.6 |
| H21A |
C21 |
C20 |
H20A |
58.6 |
290.1 |
| C20 |
C21 |
H21A |
H21 |
239.1 |
239.5 |
| C22 |
C21 |
H21A |
H21 |
120.9 |
120.5 |
| C39 |
C22 |
C21 |
H21 |
297.7 |
51.8 |
| C39 |
C22 |
C21 |
H21A |
179.0 |
291.3 |
| C1 |
C22 |
C39 |
C35 |
240.6 |
240.6 |
| C39 |
C22 |
C35 |
H35 |
11.7 |
179.4 |
| C39 |
C22 |
C35 |
H35A |
131.7 |
299.5 |
| C39 |
C22 |
C35 |
H35B |
251.8 |
59.4 |
| C22 |
C1 |
C2 |
H2 |
0.4 |
359.7 |
| C1 |
C22 |
C21 |
H21 |
180.8 |
291.4 |
| C1 |
C22 |
C21 |
H21A |
62.2 |
171.0 |
| C39 |
C22 |
C1 |
C35 |
120.4 |
119.4 |
| C1 |
C22 |
C35 |
H35 |
130.0 |
298.9 |
| C1 |
C22 |
C35 |
H35A |
250.0 |
59.0 |
| C1 |
C22 |
C35 |
H35B |
10.1 |
178.9 |
| C35 |
C22 |
C21 |
H21 |
59.5 |
171.2 |
| C35 |
C22 |
C21 |
H21A |
300.8 |
50.7 |
| H35 |
C35 |
C22 |
H35A |
240.0 |
239.9 |
| H35 |
C35 |
C22 |
H35B |
120.0 |
120.0 |
| H35A |
C35 |
C22 |
H35B |
240.0 |
240.1 |
| H39 |
C39 |
C22 |
C35 |
172.2 |
300.6 |
| H39A |
C39 |
H39 |
H39B |
120.0 |
120.0 |
| H39A |
C39 |
C22 |
C35 |
292.2 |
60.5 |
| H39 |
C39 |
H39A |
H39B |
240.0 |
240.0 |
| H39B |
C39 |
C22 |
C35 |
52.2 |
180.6 |
| H39 |
C39 |
H39B |
H39A |
120.0 |
120.0 |
| C22 |
C35 |
H35 |
H35A |
120.0 |
120.0 |
| C22 |
C35 |
H35 |
H35B |
240.0 |
240.0 |
| H35A |
C35 |
H35 |
H35B |
120.0 |
120.0 |
| C22 |
C35 |
H35A |
H35 |
240.0 |
239.9 |
| C22 |
C35 |
H35A |
H35B |
120.0 |
120.0 |
| H35 |
C35 |
H35A |
H35B |
240.0 |
240.0 |
| C22 |
C35 |
H35B |
H35 |
120.0 |
120.1 |
| C22 |
C35 |
H35B |
H35A |
240.0 |
240.1 |
| H35 |
C35 |
H35B |
H35A |
120.0 |
120.0 |