PDB Chemical Component 9QV

Ideal Model

Chemical Description

Name uridine 2',5'-bis(dihydrogen phosphate)
Formula C9 H14 N2 O12 P2
Formal charge 0
Molecular weight 404.161 g/mol
Component type RNA linking
Nonstandard Parent Id U

Chemical features

Atom count 39
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms OP3 H16
Bond count 40
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) uridine 2',5'-bis(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2~{R},3~{R},4~{R},5~{R})-2-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-oxidanyl-5-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@@H]1[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]1O[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](CO[P](O)(O)=O)O[CH]([CH]1O[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OP(=O)(O)O
InChI descriptor InChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(14)10-5)8-7(23-25(18,19)20)6(13)4(22-8)3-21-24(15,16)17/h1-2,4,6-8,13H,3H2,(H,10,12,14)(H2,15,16,17)(H2,18,19,20)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor HQYLGYLPRPXVMN-XVFCMESISA-N

Status Information

Last modified 2018-05-04
Created 2017-05-31
Release status REL
Model PDB code 5VSU
Processing site RCSB