PDB Chemical Component 9QV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9QV
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O2 |
C2 |
1.224 |
1.216 |
N3 |
C2 |
1.371 |
1.346 |
N3 |
C4 |
1.385 |
1.348 |
C2 |
N1 |
1.373 |
1.345 |
O4 |
C4 |
1.235 |
1.217 |
C4 |
C5 |
1.435 |
1.416 |
N1 |
C1' |
1.462 |
1.465 |
N1 |
C6 |
1.366 |
1.368 |
C1' |
O4' |
1.401 |
1.444 |
C1' |
C2' |
1.530 |
1.545 |
O1P |
P1 |
1.509 |
1.480 |
O4' |
C4' |
1.442 |
1.445 |
C5 |
C6 |
1.328 |
1.351 |
O2' |
C2' |
1.418 |
1.429 |
O2' |
P1 |
1.589 |
1.610 |
O2P |
P1 |
1.525 |
1.611 |
C2' |
C3' |
1.507 |
1.546 |
P1 |
O3P |
1.500 |
1.610 |
C4' |
C3' |
1.513 |
1.544 |
C4' |
C5' |
1.500 |
1.530 |
C3' |
O3' |
1.409 |
1.429 |
C5' |
O5' |
1.412 |
1.429 |
OP2 |
P |
1.481 |
1.610 |
O5' |
P |
1.575 |
1.611 |
OP1 |
P |
1.492 |
1.479 |
C5' |
H1 |
1.100 |
1.090 |
C5' |
H2 |
1.100 |
1.090 |
C4' |
H3 |
1.100 |
1.091 |
C1' |
H4 |
1.101 |
1.089 |
C6 |
H5 |
1.080 |
1.080 |
C5 |
H6 |
1.080 |
1.080 |
N3 |
H7 |
1.000 |
0.970 |
C2' |
H8 |
1.100 |
1.089 |
O3P |
H9 |
0.950 |
0.967 |
O2P |
H10 |
0.950 |
0.966 |
C3' |
H11 |
1.101 |
1.089 |
O3' |
H12 |
0.950 |
0.967 |
OP2 |
H14 |
0.950 |
0.967 |
P |
OP3 |
1.615 |
1.610 |
OP3 |
H16 |
0.951 |
0.967 |
Bond Angles for 9QV
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N3 |
H7 |
116.8 |
119.9 |
C4 |
C5 |
H6 |
120.0 |
120.4 |
N1 |
C1' |
C2' |
111.1 |
110.4 |
N1 |
C1' |
H4 |
110.6 |
110.4 |
N1 |
C6 |
H5 |
119.6 |
120.2 |
C1' |
C2' |
C3' |
100.9 |
104.0 |
C2' |
C1' |
H4 |
109.6 |
110.4 |
C1' |
C2' |
H8 |
111.8 |
110.6 |
O2' |
P1 |
O1P |
118.6 |
109.5 |
O2P |
P1 |
O1P |
100.5 |
109.5 |
O4' |
C4' |
C3' |
104.1 |
104.8 |
O4' |
C4' |
H3 |
109.3 |
110.5 |
C5 |
C6 |
H5 |
119.6 |
120.1 |
O2' |
C2' |
C3' |
108.7 |
110.5 |
O2' |
C2' |
H8 |
113.7 |
110.6 |
O2' |
P1 |
O2P |
118.8 |
109.5 |
O2' |
P1 |
O3P |
118.4 |
109.5 |
P1 |
O2P |
H10 |
109.5 |
114.0 |
C4' |
C3' |
C2' |
102.0 |
104.1 |
C2' |
C3' |
O3' |
112.2 |
110.5 |
C3' |
C2' |
H8 |
112.2 |
110.5 |
C2' |
C3' |
H11 |
109.7 |
110.5 |
P1 |
O3P |
H9 |
109.5 |
113.9 |
C4' |
C3' |
O3' |
111.9 |
110.5 |
C3' |
C4' |
H3 |
108.4 |
110.4 |
C4' |
C3' |
H11 |
109.6 |
110.5 |
C4' |
C5' |
H1 |
109.2 |
109.5 |
C4' |
C5' |
H2 |
109.3 |
109.5 |
O3' |
C3' |
H11 |
111.1 |
110.5 |
C3' |
O3' |
H12 |
109.5 |
114.0 |
C5' |
O5' |
P |
119.7 |
123.0 |
OP2 |
P |
OP3 |
108.0 |
109.5 |
O5' |
P |
OP3 |
105.3 |
109.5 |
OP1 |
P |
OP3 |
111.5 |
109.4 |
H1 |
C5' |
H2 |
109.5 |
109.5 |
P |
OP3 |
H16 |
109.5 |
114.0 |
Torsion Angles for 9QV
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C2 |
N3 |
H7 |
359.4 |
359.5 |
N3 |
C4 |
C5 |
H6 |
180.4 |
180.1 |
C2 |
N1 |
C1' |
C2' |
151.0 |
298.0 |
C2 |
N1 |
C1' |
H4 |
29.0 |
175.6 |
C2 |
N1 |
C6 |
H5 |
180.1 |
180.2 |
O4 |
C4 |
C5 |
H6 |
360.0 |
360.0 |
C4 |
C5 |
C6 |
H5 |
179.7 |
180.0 |
N1 |
C1' |
C2' |
C3' |
90.0 |
142.8 |
C2' |
C1' |
N1 |
H4 |
122.0 |
122.3 |
N1 |
C1' |
C2' |
H8 |
330.6 |
24.1 |
C6 |
N1 |
C1' |
C2' |
331.0 |
118.1 |
C6 |
N1 |
C1' |
H4 |
209.0 |
355.8 |
C5 |
C6 |
N1 |
H5 |
180.0 |
180.1 |
C1' |
O4' |
C4' |
C3' |
21.8 |
40.5 |
C1' |
O4' |
C4' |
H3 |
266.2 |
281.6 |
N1 |
C1' |
C2' |
H4 |
237.4 |
237.7 |
O2' |
C2' |
C1' |
C3' |
114.2 |
118.6 |
O2' |
C2' |
C1' |
H8 |
233.6 |
237.3 |
C4' |
C3' |
C2' |
C1' |
37.8 |
360.0 |
C1' |
C2' |
C3' |
O3' |
157.8 |
118.6 |
C3' |
C2' |
C1' |
H8 |
119.4 |
118.7 |
C1' |
C2' |
C3' |
H11 |
281.7 |
241.3 |
O2' |
P1 |
O1P |
O2P |
228.8 |
240.0 |
O2' |
P1 |
O1P |
O3P |
127.3 |
120.0 |
O1P |
P1 |
O2P |
H10 |
0.0 |
180.0 |
O1P |
P1 |
O3P |
H9 |
0.0 |
300.0 |
O4' |
C4' |
C3' |
C2' |
322.5 |
336.0 |
O4' |
C4' |
C3' |
O3' |
202.3 |
217.4 |
C3' |
C4' |
O4' |
H3 |
115.6 |
118.9 |
O4' |
C4' |
C3' |
H11 |
78.6 |
94.7 |
O4' |
C4' |
C5' |
H1 |
270.6 |
309.6 |
O4' |
C4' |
C5' |
H2 |
30.3 |
189.6 |
N1 |
C6 |
C5 |
H5 |
180.0 |
179.9 |
C1' |
C2' |
O2' |
C3' |
251.0 |
245.4 |
O2' |
C2' |
C1' |
H4 |
326.8 |
23.7 |
C1' |
C2' |
O2' |
H8 |
125.3 |
122.7 |
C4' |
C3' |
C2' |
O2' |
283.5 |
241.4 |
O2' |
C2' |
C3' |
O3' |
43.5 |
0.0 |
C3' |
C2' |
O2' |
H8 |
234.3 |
237.4 |
O2' |
C2' |
C3' |
H11 |
167.4 |
122.7 |
O2P |
P1 |
O2' |
O1P |
237.5 |
240.0 |
P1 |
O2' |
C2' |
C3' |
252.6 |
234.6 |
P1 |
O2' |
C2' |
H8 |
18.3 |
357.3 |
O2' |
P1 |
O2P |
H10 |
131.1 |
300.0 |
O2' |
P1 |
O3P |
H9 |
232.6 |
180.0 |
O2' |
P1 |
O2P |
O1P |
131.1 |
120.0 |
O2' |
P1 |
O2P |
O3P |
229.6 |
240.0 |
O2P |
P1 |
O3P |
H9 |
101.9 |
60.1 |
C3' |
C2' |
C1' |
H4 |
212.6 |
265.1 |
C1' |
C2' |
C3' |
H8 |
240.8 |
241.3 |
O2' |
C2' |
C3' |
H8 |
126.5 |
122.7 |
C4' |
C3' |
C2' |
O3' |
240.0 |
241.4 |
C2' |
C3' |
C4' |
H3 |
78.7 |
95.0 |
C4' |
C3' |
C2' |
H11 |
116.1 |
118.7 |
O3' |
C3' |
C2' |
H11 |
236.1 |
237.3 |
C2' |
C3' |
O3' |
H12 |
180.0 |
183.9 |
O2' |
P1 |
O3P |
O1P |
232.6 |
240.0 |
O2' |
P1 |
O3P |
O2P |
130.7 |
120.0 |
C1' |
C2' |
C3' |
C4' |
37.8 |
360.0 |
O4' |
C4' |
C3' |
H3 |
243.7 |
241.0 |
O2' |
C2' |
C3' |
C4' |
283.5 |
241.4 |
C2' |
C3' |
C4' |
O3' |
120.2 |
118.6 |
C4' |
C3' |
C2' |
H8 |
157.0 |
118.7 |
C2' |
C3' |
C4' |
H11 |
243.8 |
241.3 |
C3' |
C4' |
C5' |
H1 |
28.5 |
65.0 |
C3' |
C4' |
C5' |
H2 |
148.3 |
305.0 |
O3' |
C3' |
C4' |
H11 |
123.7 |
122.7 |
C4' |
C3' |
O3' |
H12 |
294.0 |
298.6 |
C4' |
C5' |
O5' |
P |
210.7 |
180.0 |
H1 |
C5' |
C4' |
H2 |
240.3 |
120.0 |
C4' |
C3' |
O3' |
C2' |
114.0 |
114.6 |
O3' |
C3' |
C2' |
H8 |
276.9 |
237.3 |
C2' |
C3' |
O3' |
H11 |
123.1 |
122.7 |
O3' |
C3' |
C4' |
H3 |
318.6 |
336.3 |
C4' |
C3' |
O3' |
H11 |
237.2 |
237.3 |
C5' |
O5' |
P |
OP3 |
212.9 |
185.0 |
O5' |
P |
OP2 |
OP3 |
110.9 |
120.0 |
OP1 |
P |
OP2 |
OP3 |
225.3 |
240.0 |
OP2 |
P |
OP3 |
H16 |
218.5 |
300.0 |
OP2 |
P |
O5' |
OP3 |
247.1 |
240.0 |
OP1 |
P |
O5' |
OP3 |
116.3 |
120.0 |
O5' |
P |
OP3 |
H16 |
109.4 |
180.1 |
OP2 |
P |
OP1 |
OP3 |
133.4 |
120.0 |
O5' |
P |
OP1 |
OP3 |
248.3 |
240.0 |
OP1 |
P |
OP3 |
H16 |
0.0 |
60.1 |
C4' |
C5' |
H1 |
H2 |
119.6 |
240.0 |
H1 |
C5' |
O5' |
P |
90.6 |
300.0 |
C4' |
C5' |
H2 |
H1 |
240.4 |
120.0 |
H2 |
C5' |
O5' |
P |
330.8 |
60.0 |
O4' |
C4' |
H3 |
C3' |
112.8 |
115.5 |
H3 |
C4' |
C3' |
C2' |
78.7 |
95.0 |
H3 |
C4' |
C3' |
O3' |
318.6 |
336.3 |
H3 |
C4' |
C3' |
H11 |
194.9 |
213.6 |
H3 |
C4' |
C5' |
H1 |
151.0 |
187.3 |
H3 |
C4' |
C5' |
H2 |
270.8 |
67.3 |
N1 |
C1' |
H4 |
C2' |
122.8 |
122.3 |
H4 |
C1' |
C2' |
C3' |
212.6 |
265.1 |
H4 |
C1' |
C2' |
H8 |
93.2 |
146.5 |
H6 |
C5 |
C6 |
H5 |
359.7 |
0.1 |
C1' |
C2' |
H8 |
C3' |
112.5 |
114.7 |
H8 |
C2' |
C1' |
H4 |
93.2 |
146.5 |
O2' |
C2' |
H8 |
C3' |
236.2 |
237.4 |
H8 |
C2' |
C3' |
O3' |
276.9 |
237.3 |
H8 |
C2' |
C3' |
H11 |
40.9 |
0.0 |
H10 |
O2P |
P1 |
O1P |
0.0 |
180.0 |
C4' |
C3' |
H11 |
C2' |
248.8 |
245.3 |
C2' |
C3' |
H11 |
O3' |
235.4 |
237.3 |
H11 |
C3' |
C2' |
H8 |
40.9 |
0.0 |
C4' |
C3' |
H11 |
O3' |
124.2 |
122.7 |
H11 |
C3' |
C4' |
H3 |
194.9 |
213.6 |
H11 |
C3' |
O3' |
H12 |
56.8 |
61.2 |
H12 |
O3' |
C3' |
H11 |
56.8 |
61.2 |
H14 |
OP2 |
P |
OP3 |
134.7 |
300.0 |