PDB Chemical Component 9QV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9QV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O2 C2 1.224 1.216
N3 C2 1.371 1.346
N3 C4 1.385 1.348
C2 N1 1.373 1.345
O4 C4 1.235 1.217
C4 C5 1.435 1.416
N1 C1' 1.462 1.465
N1 C6 1.366 1.368
C1' O4' 1.401 1.444
C1' C2' 1.530 1.545
O1P P1 1.509 1.480
O4' C4' 1.442 1.445
C5 C6 1.328 1.351
O2' C2' 1.418 1.429
O2' P1 1.589 1.610
O2P P1 1.525 1.611
C2' C3' 1.507 1.546
P1 O3P 1.500 1.610
C4' C3' 1.513 1.544
C4' C5' 1.500 1.530
C3' O3' 1.409 1.429
C5' O5' 1.412 1.429
OP2 P 1.481 1.610
O5' P 1.575 1.611
OP1 P 1.492 1.479
C5' H1 1.100 1.090
C5' H2 1.100 1.090
C4' H3 1.100 1.091
C1' H4 1.101 1.089
C6 H5 1.080 1.080
C5 H6 1.080 1.080
N3 H7 1.000 0.970
C2' H8 1.100 1.089
O3P H9 0.950 0.967
O2P H10 0.950 0.966
C3' H11 1.101 1.089
O3' H12 0.950 0.967
OP2 H14 0.950 0.967
P OP3 1.615 1.610
OP3 H16 0.951 0.967

Bond Angles for 9QV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N3 H7 116.8 119.9
C4 C5 H6 120.0 120.4
N1 C1' C2' 111.1 110.4
N1 C1' H4 110.6 110.4
N1 C6 H5 119.6 120.2
C1' C2' C3' 100.9 104.0
C2' C1' H4 109.6 110.4
C1' C2' H8 111.8 110.6
O2' P1 O1P 118.6 109.5
O2P P1 O1P 100.5 109.5
O4' C4' C3' 104.1 104.8
O4' C4' H3 109.3 110.5
C5 C6 H5 119.6 120.1
O2' C2' C3' 108.7 110.5
O2' C2' H8 113.7 110.6
O2' P1 O2P 118.8 109.5
O2' P1 O3P 118.4 109.5
P1 O2P H10 109.5 114.0
C4' C3' C2' 102.0 104.1
C2' C3' O3' 112.2 110.5
C3' C2' H8 112.2 110.5
C2' C3' H11 109.7 110.5
P1 O3P H9 109.5 113.9
C4' C3' O3' 111.9 110.5
C3' C4' H3 108.4 110.4
C4' C3' H11 109.6 110.5
C4' C5' H1 109.2 109.5
C4' C5' H2 109.3 109.5
O3' C3' H11 111.1 110.5
C3' O3' H12 109.5 114.0
C5' O5' P 119.7 123.0
OP2 P OP3 108.0 109.5
O5' P OP3 105.3 109.5
OP1 P OP3 111.5 109.4
H1 C5' H2 109.5 109.5
P OP3 H16 109.5 114.0

Torsion Angles for 9QV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 C2 N3 H7 359.4 359.5
N3 C4 C5 H6 180.4 180.1
C2 N1 C1' C2' 151.0 298.0
C2 N1 C1' H4 29.0 175.6
C2 N1 C6 H5 180.1 180.2
O4 C4 C5 H6 360.0 360.0
C4 C5 C6 H5 179.7 180.0
N1 C1' C2' C3' 90.0 142.8
C2' C1' N1 H4 122.0 122.3
N1 C1' C2' H8 330.6 24.1
C6 N1 C1' C2' 331.0 118.1
C6 N1 C1' H4 209.0 355.8
C5 C6 N1 H5 180.0 180.1
C1' O4' C4' C3' 21.8 40.5
C1' O4' C4' H3 266.2 281.6
N1 C1' C2' H4 237.4 237.7
O2' C2' C1' C3' 114.2 118.6
O2' C2' C1' H8 233.6 237.3
C4' C3' C2' C1' 37.8 360.0
C1' C2' C3' O3' 157.8 118.6
C3' C2' C1' H8 119.4 118.7
C1' C2' C3' H11 281.7 241.3
O2' P1 O1P O2P 228.8 240.0
O2' P1 O1P O3P 127.3 120.0
O1P P1 O2P H10 0.0 180.0
O1P P1 O3P H9 0.0 300.0
O4' C4' C3' C2' 322.5 336.0
O4' C4' C3' O3' 202.3 217.4
C3' C4' O4' H3 115.6 118.9
O4' C4' C3' H11 78.6 94.7
O4' C4' C5' H1 270.6 309.6
O4' C4' C5' H2 30.3 189.6
N1 C6 C5 H5 180.0 179.9
C1' C2' O2' C3' 251.0 245.4
O2' C2' C1' H4 326.8 23.7
C1' C2' O2' H8 125.3 122.7
C4' C3' C2' O2' 283.5 241.4
O2' C2' C3' O3' 43.5 0.0
C3' C2' O2' H8 234.3 237.4
O2' C2' C3' H11 167.4 122.7
O2P P1 O2' O1P 237.5 240.0
P1 O2' C2' C3' 252.6 234.6
P1 O2' C2' H8 18.3 357.3
O2' P1 O2P H10 131.1 300.0
O2' P1 O3P H9 232.6 180.0
O2' P1 O2P O1P 131.1 120.0
O2' P1 O2P O3P 229.6 240.0
O2P P1 O3P H9 101.9 60.1
C3' C2' C1' H4 212.6 265.1
C1' C2' C3' H8 240.8 241.3
O2' C2' C3' H8 126.5 122.7
C4' C3' C2' O3' 240.0 241.4
C2' C3' C4' H3 78.7 95.0
C4' C3' C2' H11 116.1 118.7
O3' C3' C2' H11 236.1 237.3
C2' C3' O3' H12 180.0 183.9
O2' P1 O3P O1P 232.6 240.0
O2' P1 O3P O2P 130.7 120.0
C1' C2' C3' C4' 37.8 360.0
O4' C4' C3' H3 243.7 241.0
O2' C2' C3' C4' 283.5 241.4
C2' C3' C4' O3' 120.2 118.6
C4' C3' C2' H8 157.0 118.7
C2' C3' C4' H11 243.8 241.3
C3' C4' C5' H1 28.5 65.0
C3' C4' C5' H2 148.3 305.0
O3' C3' C4' H11 123.7 122.7
C4' C3' O3' H12 294.0 298.6
C4' C5' O5' P 210.7 180.0
H1 C5' C4' H2 240.3 120.0
C4' C3' O3' C2' 114.0 114.6
O3' C3' C2' H8 276.9 237.3
C2' C3' O3' H11 123.1 122.7
O3' C3' C4' H3 318.6 336.3
C4' C3' O3' H11 237.2 237.3
C5' O5' P OP3 212.9 185.0
O5' P OP2 OP3 110.9 120.0
OP1 P OP2 OP3 225.3 240.0
OP2 P OP3 H16 218.5 300.0
OP2 P O5' OP3 247.1 240.0
OP1 P O5' OP3 116.3 120.0
O5' P OP3 H16 109.4 180.1
OP2 P OP1 OP3 133.4 120.0
O5' P OP1 OP3 248.3 240.0
OP1 P OP3 H16 0.0 60.1
C4' C5' H1 H2 119.6 240.0
H1 C5' O5' P 90.6 300.0
C4' C5' H2 H1 240.4 120.0
H2 C5' O5' P 330.8 60.0
O4' C4' H3 C3' 112.8 115.5
H3 C4' C3' C2' 78.7 95.0
H3 C4' C3' O3' 318.6 336.3
H3 C4' C3' H11 194.9 213.6
H3 C4' C5' H1 151.0 187.3
H3 C4' C5' H2 270.8 67.3
N1 C1' H4 C2' 122.8 122.3
H4 C1' C2' C3' 212.6 265.1
H4 C1' C2' H8 93.2 146.5
H6 C5 C6 H5 359.7 0.1
C1' C2' H8 C3' 112.5 114.7
H8 C2' C1' H4 93.2 146.5
O2' C2' H8 C3' 236.2 237.4
H8 C2' C3' O3' 276.9 237.3
H8 C2' C3' H11 40.9 0.0
H10 O2P P1 O1P 0.0 180.0
C4' C3' H11 C2' 248.8 245.3
C2' C3' H11 O3' 235.4 237.3
H11 C3' C2' H8 40.9 0.0
C4' C3' H11 O3' 124.2 122.7
H11 C3' C4' H3 194.9 213.6
H11 C3' O3' H12 56.8 61.2
H12 O3' C3' H11 56.8 61.2
H14 OP2 P OP3 134.7 300.0