Atom Nomenclature for 9QG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9QG

Atom Name (V3) Atom Name (V2)
O1 O1
O5 O5
C6 C6
O6 O6
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
O2 O2
O3 O3
O4 O4
OAR OAR
CAP CAP
OAQ OAQ
CAM CAM
CAN CAN
CAO CAO
H61 H1
H62 H2
HO6 H3
H1 H4
H2 H5
H3 H6
H4 H7
H5 H8
HO2 H9
HO4 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18