PDB Chemical Component 9PL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9PL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C5 |
N1 |
1.349 |
1.369 |
| N1 |
C2 |
1.332 |
1.351 |
| N1 |
C6 |
1.485 |
1.464 |
| N3 |
C2 |
1.348 |
1.305 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
N3 |
1.344 |
1.342 |
| C4 |
C5 |
1.382 |
1.347 |
| C4 |
H4 |
1.080 |
1.080 |
| C7 |
C5 |
1.510 |
1.507 |
| C6 |
H6 |
1.100 |
1.091 |
| C6 |
H6A |
1.100 |
1.090 |
| C6 |
H6B |
1.100 |
1.090 |
| C8 |
C7 |
1.526 |
1.530 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.091 |
| C12 |
C8 |
1.530 |
1.545 |
| C9 |
C8 |
1.536 |
1.546 |
| C8 |
H8 |
1.100 |
1.090 |
| O10 |
C9 |
1.424 |
1.458 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.100 |
1.090 |
| C11 |
O10 |
1.445 |
1.341 |
| O15 |
C11 |
1.213 |
1.209 |
| C11 |
C12 |
1.478 |
1.519 |
| C13 |
C12 |
1.518 |
1.530 |
| C12 |
H12 |
1.100 |
1.090 |
| C14 |
C13 |
1.497 |
1.530 |
| C13 |
H13 |
1.100 |
1.090 |
| C13 |
H13A |
1.100 |
1.090 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.089 |
| C14 |
H14B |
1.100 |
1.090 |
Bond Angles for 9PL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
N1 |
C6 |
128.2 |
126.4 |
| C2 |
N1 |
C6 |
123.6 |
126.4 |
| N1 |
C2 |
H2 |
125.4 |
125.7 |
| N1 |
C6 |
H6 |
109.5 |
109.5 |
| N1 |
C6 |
H6A |
109.5 |
109.5 |
| N1 |
C6 |
H6B |
109.5 |
109.5 |
| N3 |
C2 |
H2 |
125.4 |
125.6 |
| C5 |
C4 |
H4 |
126.3 |
126.0 |
| H6 |
C6 |
H6A |
109.4 |
109.5 |
| H6 |
C6 |
H6B |
109.5 |
109.4 |
| H6A |
C6 |
H6B |
109.5 |
109.4 |
| C8 |
C7 |
H7 |
109.7 |
109.4 |
| C8 |
C7 |
H7A |
109.7 |
109.4 |
| H7 |
C7 |
H7A |
109.3 |
109.5 |
| C12 |
C8 |
H8 |
106.8 |
110.9 |
| C9 |
C8 |
H8 |
109.6 |
110.9 |
| O10 |
C9 |
H9 |
111.5 |
110.4 |
| O10 |
C9 |
H9A |
111.5 |
110.6 |
| H9 |
C9 |
H9A |
107.3 |
110.4 |
| C11 |
C12 |
H12 |
120.3 |
110.3 |
| C13 |
C12 |
H12 |
107.6 |
110.4 |
| C14 |
C13 |
H13 |
108.9 |
109.5 |
| C14 |
C13 |
H13A |
108.9 |
109.5 |
| H13 |
C13 |
H13A |
110.0 |
109.5 |
| H14 |
C14 |
H14A |
109.5 |
109.4 |
| H14 |
C14 |
H14B |
109.4 |
109.5 |
| H14A |
C14 |
H14B |
109.5 |
109.5 |
Torsion Angles for 9PL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C5 |
C6 |
179.9 |
179.7 |
| C5 |
N1 |
C2 |
H2 |
180.3 |
180.2 |
| C5 |
N1 |
C6 |
H6 |
180.0 |
274.8 |
| C5 |
N1 |
C6 |
H6A |
300.0 |
34.8 |
| C5 |
N1 |
C6 |
H6B |
60.0 |
154.8 |
| C5 |
N1 |
C2 |
C6 |
180.1 |
180.3 |
| C2 |
N1 |
C6 |
H6 |
0.2 |
95.1 |
| C2 |
N1 |
C6 |
H6A |
120.1 |
215.2 |
| C2 |
N1 |
C6 |
H6B |
240.1 |
335.1 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.1 |
| C6 |
N1 |
C2 |
H2 |
0.2 |
359.9 |
| H6 |
C6 |
N1 |
H6A |
240.0 |
240.0 |
| H6 |
C6 |
N1 |
H6B |
120.0 |
120.0 |
| H6A |
C6 |
N1 |
H6B |
240.0 |
240.0 |
| N3 |
C2 |
N1 |
C6 |
180.2 |
180.0 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
179.9 |
| H2 |
C2 |
N1 |
C6 |
0.2 |
359.9 |
| C4 |
N3 |
C2 |
H2 |
179.9 |
180.0 |
| C4 |
C5 |
N1 |
C6 |
179.7 |
179.8 |
| C7 |
C5 |
C4 |
H4 |
359.2 |
359.7 |
| N1 |
C6 |
H6 |
H6A |
120.0 |
120.1 |
| N1 |
C6 |
H6 |
H6B |
240.0 |
240.0 |
| H6A |
C6 |
H6 |
H6B |
120.0 |
119.9 |
| N1 |
C6 |
H6A |
H6 |
240.0 |
240.0 |
| N1 |
C6 |
H6A |
H6B |
120.0 |
120.0 |
| H6 |
C6 |
H6A |
H6B |
240.0 |
240.1 |
| N1 |
C6 |
H6B |
H6 |
120.1 |
120.0 |
| N1 |
C6 |
H6B |
H6A |
240.0 |
240.0 |
| H6 |
C6 |
H6B |
H6A |
119.9 |
119.9 |
| H7 |
C7 |
C8 |
H7A |
120.0 |
120.0 |
| C8 |
C7 |
H7 |
H7A |
239.7 |
240.0 |
| C8 |
C7 |
H7A |
H7 |
120.3 |
120.0 |
| C12 |
C8 |
C7 |
H7 |
60.3 |
58.7 |
| C12 |
C8 |
C7 |
H7A |
300.3 |
298.7 |
| C9 |
C8 |
C12 |
H8 |
241.8 |
241.7 |
| C9 |
C8 |
C7 |
H7 |
292.3 |
305.8 |
| C9 |
C8 |
C7 |
H7A |
172.3 |
185.8 |
| C12 |
C8 |
C9 |
H8 |
116.4 |
118.3 |
| H8 |
C8 |
C7 |
H7 |
175.2 |
182.2 |
| H8 |
C8 |
C7 |
H7A |
55.2 |
62.2 |
| O10 |
C9 |
C8 |
H8 |
264.1 |
214.8 |
| H9 |
C9 |
O10 |
H9A |
120.0 |
122.4 |
| H9 |
C9 |
C8 |
H8 |
24.1 |
333.6 |
| O10 |
C9 |
H9 |
H9A |
237.5 |
237.4 |
| H9A |
C9 |
C8 |
H8 |
144.1 |
95.9 |
| O10 |
C9 |
H9A |
H9 |
122.4 |
122.5 |
| C11 |
O10 |
C9 |
H9 |
236.7 |
271.8 |
| C11 |
O10 |
C9 |
H9A |
116.7 |
149.4 |
| O15 |
C11 |
C12 |
H12 |
329.9 |
301.2 |
| C11 |
C12 |
C8 |
H8 |
90.2 |
133.7 |
| C13 |
C12 |
C11 |
H12 |
120.8 |
122.3 |
| C13 |
C12 |
C8 |
H8 |
199.8 |
252.4 |
| C11 |
C12 |
C13 |
H12 |
231.0 |
237.7 |
| H12 |
C12 |
C8 |
H8 |
322.1 |
14.9 |
| C14 |
C13 |
C12 |
H12 |
350.5 |
55.9 |
| H13 |
C13 |
C14 |
H13A |
120.0 |
120.0 |
| H13 |
C13 |
C12 |
H12 |
110.5 |
175.8 |
| C14 |
C13 |
H13 |
H13A |
240.7 |
240.0 |
| H13A |
C13 |
C12 |
H12 |
230.5 |
295.9 |
| C14 |
C13 |
H13A |
H13 |
119.3 |
120.0 |
| H14 |
C14 |
C13 |
H13 |
60.0 |
180.0 |
| H14 |
C14 |
C13 |
H13A |
300.0 |
60.0 |
| H14A |
C14 |
H14 |
H14B |
120.0 |
120.0 |
| H14A |
C14 |
C13 |
H13 |
180.0 |
300.0 |
| H14A |
C14 |
C13 |
H13A |
60.0 |
180.0 |
| H14 |
C14 |
H14A |
H14B |
240.0 |
240.1 |
| H14B |
C14 |
C13 |
H13 |
300.0 |
60.0 |
| H14B |
C14 |
C13 |
H13A |
180.0 |
300.0 |
| H14 |
C14 |
H14B |
H14A |
120.0 |
119.9 |