Atom Nomenclature for 9P7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9P7

Atom Name (V3) Atom Name (V2)
C10 C1
C11 C2
C13 C3
C14 C4
N29 N1
C28 C5
C24 C6
C25 C7
C23 C8
C27 C9
C22 C10
C21 C11
C26 C12
N12 N2
C08 C13
C09 C14
C07 C15
C06 C16
C05 C17
C04 C18
C03 C19
C02 C20
N02 N3
N01 N4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21