PDB Chemical Component 9P2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9P2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C20 O21 1.414 1.440
C20 O19 1.462 1.439
O21 C16 1.439 1.365
O19 C17 1.443 1.366
C16 C17 1.347 1.393
C16 C15 1.397 1.386
C17 C18 1.490 1.384
C15 C14 1.475 1.382
C18 C13 1.397 1.383
C14 C13 1.359 1.382
C13 C12 1.528 1.507
C12 N11 1.498 1.469
C40 C39 1.387 1.379
C40 C41 1.367 1.384
C34 C33 1.420 1.380
C34 C35 1.400 1.383
C33 C32 1.393 1.393
C39 C38 1.406 1.396
C41 C42 1.411 1.384
C38 C01 1.472 1.479
C38 C43 1.362 1.396
N02 C01 1.412 1.313
N02 C03 1.347 1.346
N11 C22 1.446 1.469
N11 C10 1.450 1.469
C31 C30 1.432 1.383
C31 C23 1.446 1.383
C35 C36 1.421 1.384
C01 N05 1.349 1.364
C32 C03 1.366 1.484
C32 C37 1.429 1.394
C03 C04 1.430 1.360
C42 C43 1.393 1.380
C30 C29 1.435 1.386
N05 C04 1.397 1.366
N05 C06 1.407 1.466
C22 C23 1.571 1.507
C04 C10 1.585 1.508
C06 C07 1.534 1.529
C23 C24 1.368 1.382
C36 C37 1.394 1.380
C29 O28 1.367 1.365
C29 C25 1.382 1.393
C24 C25 1.502 1.386
O28 C27 1.372 1.440
C07 C08 1.554 1.530
C25 O26 1.360 1.365
C08 C09 1.566 1.529
C27 O26 1.410 1.440
C15 H1 1.080 1.080
C18 H2 1.079 1.080
C20 H3 1.100 1.091
C20 H4 1.100 1.089
C06 H5 1.100 1.091
C06 H6 1.100 1.090
C07 H7 1.100 1.091
C07 H8 1.100 1.090
C08 H9 1.100 1.091
C08 H10 1.100 1.090
C09 H11 1.100 1.090
C09 H12 1.100 1.091
C09 H13 1.100 1.090
C10 H14 1.100 1.090
C10 H15 1.100 1.090
C12 H17 1.100 1.090
C12 H18 1.100 1.090
C14 H19 1.080 1.080
C22 H20 1.100 1.090
C22 H21 1.100 1.090
C24 H22 1.080 1.079
C27 H23 1.101 1.091
C27 H24 1.100 1.090
C30 H25 1.080 1.080
C31 H26 1.080 1.079
C33 H27 1.080 1.080
C34 H28 1.080 1.080
C35 H29 1.080 1.080
C36 H30 1.080 1.080
C37 H31 1.080 1.080
C39 H32 1.080 1.080
C40 H33 1.080 1.079
C41 H34 1.081 1.079
C42 H35 1.080 1.080
C43 H36 1.080 1.079

Bond Angles for 9P2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O19 C20 O21 106.1 103.8
O21 C20 H3 110.3 110.5
O21 C20 H4 110.3 110.6
O19 C20 H3 110.3 110.6
O19 C20 H4 110.3 110.6
C16 C17 C18 120.2 119.8
C16 C15 C14 119.7 120.0
C16 C15 H1 120.1 120.0
C17 C18 C13 119.4 120.1
C17 C18 H2 120.3 120.0
C15 C14 C13 120.3 120.2
C14 C15 H1 120.1 120.0
C15 C14 H19 119.9 119.9
C18 C13 C12 121.5 119.9
C13 C18 H2 120.3 120.0
C13 C12 H17 110.2 109.5
C13 C12 H18 110.2 109.5
C12 N11 C22 113.4 111.0
C40 C39 H32 119.5 120.1
C40 C41 C42 119.4 120.2
C41 C40 H33 120.1 119.9
C40 C41 H34 120.3 119.9
C34 C33 H27 120.1 120.0
C34 C35 C36 119.9 120.2
C35 C34 H28 119.7 119.9
C34 C35 H29 120.0 119.9
C33 C32 C37 119.8 119.7
C39 C38 C43 119.2 119.7
C41 C42 C43 120.3 120.2
C42 C41 H34 120.3 119.9
C41 C42 H35 119.8 119.9
C38 C43 C42 120.3 119.8
C38 C43 H36 119.9 120.0
N02 C01 N05 107.9 108.6
N02 C03 C04 107.1 108.1
N11 C22 C23 107.8 109.5
N11 C22 H20 109.9 109.4
N11 C22 H21 109.9 109.4
N11 C10 H14 109.6 109.5
N11 C10 H15 109.6 109.5
C31 C30 H25 120.3 120.0
C35 C36 C37 119.6 120.1
C36 C35 H29 120.1 119.9
C35 C36 H30 120.2 119.9
C01 N05 C04 108.9 107.3
C01 N05 C06 127.0 126.4
C32 C37 C36 120.5 119.9
C32 C37 H31 119.7 120.1
C03 C04 C10 127.2 126.5
C43 C42 H35 119.9 119.9
C42 C43 H36 119.9 120.1
N05 C04 C10 125.9 126.6
N05 C06 C07 105.8 109.5
N05 C06 H5 110.4 109.4
N05 C06 H6 110.4 109.4
C22 C23 C24 121.0 119.9
C23 C22 H20 109.9 109.5
C23 C22 H21 109.9 109.5
C04 C10 H14 109.5 109.4
C04 C10 H15 109.6 109.4
C06 C07 C08 115.0 109.5
C07 C06 H5 110.4 109.5
C07 C06 H6 110.4 109.5
C06 C07 H7 108.1 109.5
C06 C07 H8 108.1 109.5
C23 C24 C25 119.5 120.0
C23 C24 H22 120.2 120.0
C37 C36 H30 120.2 120.0
C36 C37 H31 119.7 120.0
C24 C25 O26 132.0 131.5
C25 C24 H22 120.2 120.0
O28 C27 H23 110.1 110.6
O28 C27 H24 110.1 110.7
C07 C08 C09 110.3 109.5
C08 C07 H7 108.1 109.4
C08 C07 H8 108.0 109.5
C07 C08 H9 109.3 109.4
C07 C08 H10 109.2 109.5
C09 C08 H9 109.2 109.5
C09 C08 H10 109.3 109.5
C08 C09 H11 109.5 109.5
C08 C09 H12 109.5 109.5
C08 C09 H13 109.4 109.5
H3 C20 H4 109.5 110.6
H5 C06 H6 109.5 109.5
H7 C07 H8 109.5 109.4
H9 C08 H10 109.5 109.5
H11 C09 H12 109.4 109.5
H11 C09 H13 109.5 109.5
H12 C09 H13 109.5 109.4
H14 C10 H15 109.5 109.5
H17 C12 H18 109.5 109.5
H20 C22 H21 109.5 109.4
H23 C27 H24 109.5 110.5

Torsion Angles for 9P2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O19 C20 O21 H3 240.5 118.5
O19 C20 O21 H4 119.5 241.4
H3 C20 O21 H4 238.9 122.8
O21 C20 O19 H3 119.5 241.5
O21 C20 O19 H4 240.5 118.6
H3 C20 O19 H4 121.1 237.1
O21 C16 C15 H1 0.0 359.7
O19 C17 C18 H2 359.6 360.0
C17 C16 C15 C14 359.7 0.0
C17 C16 C15 H1 179.7 179.7
C16 C17 C18 C13 359.5 0.0
C16 C17 C18 H2 179.5 180.0
C16 C15 C14 C13 0.6 360.0
C14 C15 C16 H1 180.0 180.3
C16 C15 C14 H19 180.6 179.8
C17 C18 C13 C12 179.1 180.0
C13 C18 C17 H2 180.0 180.1
C16 C15 C14 H1 180.0 179.7
C17 C18 C13 H2 180.0 179.9
C15 C14 C13 C18 359.1 0.1
C18 C13 C12 H17 357.5 329.0
C18 C13 C12 H18 118.5 209.0
C13 C14 C15 H1 180.6 180.2
C15 C14 C13 H19 180.0 179.8
C14 C13 C18 H2 180.8 180.0
C14 C13 C12 H17 175.8 149.0
C14 C13 C12 H18 296.8 29.0
C15 C14 C13 C12 180.8 180.0
C12 C13 C18 H2 359.0 0.0
C13 C12 N11 C22 223.1 76.5
H17 C12 C13 H18 239.0 120.0
C18 C13 C12 N11 238.0 89.0
C12 N11 C22 C23 128.9 199.3
C12 N11 C22 H20 248.6 319.3
C12 N11 C22 H21 9.1 79.2
C12 N11 C10 H14 44.9 306.1
C12 N11 C10 H15 165.1 186.0
C40 C39 C38 C43 1.2 0.3
C41 C40 C39 H32 179.3 180.1
C40 C41 C42 C43 359.9 359.7
C42 C41 C40 H34 180.0 180.0
C40 C41 C42 H35 179.9 180.0
C34 C33 C32 C37 358.8 0.2
C35 C34 C33 H27 180.6 180.1
C34 C35 C36 C37 0.1 359.7
C36 C35 C34 H29 180.0 180.0
C34 C35 C36 H30 180.1 180.0
C33 C32 C37 C36 1.3 359.4
C33 C32 C37 H31 181.3 179.7
C39 C38 C43 C42 359.0 359.4
C39 C38 C43 H36 179.0 179.7
C42 C41 C40 H33 180.2 180.1
C40 C41 C42 H34 180.0 180.0
C38 C43 C42 C41 0.5 0.6
C43 C42 C41 H35 180.0 179.7
C41 C42 C43 H36 180.5 180.3
C41 C42 C43 C38 0.5 0.6
C38 C43 C42 H35 180.5 180.3
C42 C43 C38 H36 180.0 179.7
N02 C01 N05 C04 359.1 360.0
N02 C01 N05 C06 181.7 180.0
C03 N02 C01 N05 0.0 0.0
N02 C03 C04 C10 180.7 180.0
C22 N11 C10 H14 276.3 70.1
C22 N11 C10 H15 36.4 310.0
N11 C22 C23 C24 124.2 91.2
C23 C22 N11 H20 240.3 240.0
C23 C22 N11 H21 119.7 120.1
H20 C22 N11 H21 239.5 240.1
C04 C10 N11 H14 240.1 119.9
C04 C10 N11 H15 119.9 240.0
H14 C10 N11 H15 239.8 120.1
C31 C23 C22 H20 185.3 151.0
C31 C23 C22 H21 64.7 30.9
C31 C23 C24 H22 179.7 180.2
C36 C35 C34 H28 180.0 180.0
C34 C35 C36 H29 180.0 180.0
C32 C37 C36 C35 359.2 0.6
C37 C36 C35 H30 180.0 179.7
C35 C36 C37 H31 179.3 180.3
C01 N05 C04 C10 179.4 180.0
C01 N05 C06 C07 96.2 94.0
C01 N05 C06 H5 215.6 214.0
C01 N05 C06 H6 336.8 333.9
C35 C36 C37 C32 359.2 0.6
C32 C37 C36 H30 179.3 180.3
C36 C37 C32 H31 180.0 179.7
C01 N05 C04 C03 1.4 0.0
N05 C04 C03 C10 178.0 180.0
C03 C04 C10 H14 0.8 22.7
C03 C04 C10 H15 240.7 142.7
C43 C42 C41 H34 179.9 179.7
C41 C42 C43 H35 180.0 180.3
C38 C43 C42 H36 180.0 180.3
C01 N05 C04 C06 182.5 180.0
C03 C04 N05 C10 182.0 180.0
N05 C04 C10 H14 183.2 202.7
N05 C04 C10 H15 63.1 322.8
C01 N05 C06 C04 177.0 180.0
C06 N05 C04 C10 356.9 360.0
N05 C06 C07 C08 191.1 180.0
C07 C06 N05 H5 240.6 240.0
C07 C06 N05 H6 119.4 120.0
N05 C06 C07 H7 312.0 300.0
N05 C06 C07 H8 70.3 60.0
H5 C06 N05 H6 238.8 240.0
N11 C22 C23 H20 119.7 120.0
N11 C22 C23 H21 240.3 240.0
C22 C23 C24 C25 180.4 180.0
C22 C23 C24 H22 0.4 359.9
H20 C22 C23 H21 120.6 120.0
N11 C10 C04 H14 119.9 240.0
N11 C10 C04 H15 240.1 120.0
H14 C10 C04 H15 120.1 240.0
N05 C06 C07 H5 119.4 120.0
N05 C06 C07 H6 240.6 240.0
C06 C07 C08 C09 177.3 180.0
C08 C07 C06 H7 239.2 240.0
C08 C07 C06 H8 120.8 120.1
C06 C07 C08 H9 297.4 300.0
C06 C07 C08 H10 57.1 60.0
H5 C06 C07 H6 121.2 120.1
H7 C07 C06 H8 241.6 240.0
C24 C23 C22 H20 4.5 331.3
C24 C23 C22 H21 244.0 211.2
C23 C24 C25 O26 180.1 180.0
C25 C24 C23 H22 180.0 180.0
C37 C36 C35 H29 180.1 179.7
C35 C36 C37 H30 180.0 180.3
C32 C37 C36 H31 180.0 180.3
C29 O28 C27 H23 99.7 268.6
C29 O28 C27 H24 220.6 145.8
C29 C25 C24 H22 180.1 180.0
C23 C24 C25 H22 180.0 180.0
H23 C27 O28 H24 239.1 122.8
C08 C07 C06 H5 71.7 60.0
C08 C07 C06 H6 310.5 300.0
C06 C07 C08 H7 120.8 120.0
C06 C07 C08 H8 239.2 239.9
C09 C08 C07 H9 239.9 240.0
C09 C08 C07 H10 120.1 120.0
C07 C08 C09 H11 180.0 300.0
C07 C08 C09 H12 300.0 60.0
C07 C08 C09 H13 60.0 180.0
H7 C07 C08 H8 118.4 120.0
H9 C08 C07 H10 240.2 240.0
O26 C25 C24 H22 0.1 0.0
C09 C08 C07 H7 56.4 60.0
C09 C08 C07 H8 298.1 300.1
C07 C08 C09 H9 120.1 120.0
C07 C08 C09 H10 239.9 240.0
H9 C08 C09 H10 119.8 120.0
H11 C09 C08 H12 240.0 240.0
H11 C09 C08 H13 120.0 120.0
H12 C09 C08 H13 240.0 240.0
C16 C15 H1 C14 180.0 180.3
H1 C15 C14 C13 180.6 180.2
H1 C15 C14 H19 0.6 0.0
C17 C18 H2 C13 180.0 180.1
H2 C18 C13 C12 359.0 0.0
O19 C20 H3 O21 116.9 245.7
O21 C20 H3 H4 121.6 237.2
O19 C20 H3 H4 238.4 122.9
O19 C20 H4 O21 243.1 114.4
O21 C20 H4 H3 238.4 122.8
O19 C20 H4 H3 121.6 237.1
N05 C06 H5 C07 243.4 240.0
N05 C06 H5 H6 121.7 119.9
H5 C06 C07 C08 71.7 60.0
C07 C06 H5 H6 238.3 239.9
H5 C06 C07 H7 192.6 180.0
H5 C06 C07 H8 310.9 300.0
N05 C06 H6 C07 116.6 120.0
N05 C06 H6 H5 238.3 240.1
H6 C06 C07 C08 310.5 300.0
C07 C06 H6 H5 121.7 120.1
H6 C06 C07 H7 71.4 59.9
H6 C06 C07 H8 189.7 179.9
C06 C07 H7 C08 234.9 240.0
H7 C07 C06 H5 192.6 180.0
H7 C07 C06 H6 71.4 59.9
C06 C07 H7 H8 117.5 120.0
H7 C07 C08 C09 56.4 60.0
C08 C07 H7 H8 242.5 240.0
H7 C07 C08 H9 176.5 180.0
H7 C07 C08 H10 296.3 300.0
C06 C07 H8 C08 125.1 120.0
H8 C07 C06 H5 310.9 300.0
H8 C07 C06 H6 189.7 179.9
C06 C07 H8 H7 242.5 240.0
H8 C07 C08 C09 298.1 300.1
C08 C07 H8 H7 117.5 119.9
H8 C07 C08 H9 58.2 60.0
H8 C07 C08 H10 178.0 180.0
C07 C08 H9 C09 239.2 240.0
H9 C08 C07 H7 176.5 180.0
H9 C08 C07 H8 58.2 60.0
C07 C08 H9 H10 119.6 120.0
C09 C08 H9 H10 240.4 240.0
H9 C08 C09 H11 59.9 180.0
H9 C08 C09 H12 179.9 300.0
H9 C08 C09 H13 299.9 60.0
C07 C08 H10 C09 120.8 120.0
H10 C08 C07 H7 296.3 300.0
H10 C08 C07 H8 178.0 180.0
C07 C08 H10 H9 240.4 240.1
C09 C08 H10 H9 119.6 120.0
H10 C08 C09 H11 300.1 60.0
H10 C08 C09 H12 60.1 180.0
H10 C08 C09 H13 180.1 300.0
H11 C09 C08 H9 59.9 180.0
H11 C09 C08 H10 300.1 60.0
C08 C09 H11 H12 120.0 120.1
C08 C09 H11 H13 240.0 240.0
H12 C09 H11 H13 120.0 120.0
H12 C09 C08 H9 179.9 300.0
H12 C09 C08 H10 60.1 180.0
C08 C09 H12 H11 240.0 240.0
C08 C09 H12 H13 120.0 120.0
H11 C09 H12 H13 240.0 240.0
H13 C09 C08 H9 299.9 60.0
H13 C09 C08 H10 180.1 300.0
C08 C09 H13 H11 120.0 120.0
C08 C09 H13 H12 240.0 240.0
H11 C09 H13 H12 120.0 120.0
N11 C10 H14 H15 120.2 239.9
C04 C10 H14 H15 239.8 120.0
N11 C10 H15 H14 239.8 120.1
C04 C10 H15 H14 120.2 240.0
C13 C12 H17 H18 121.4 240.0
H17 C12 N11 C22 103.6 196.5
C13 C12 H18 H17 238.6 120.0
H18 C12 N11 C22 342.6 316.4
C15 C14 H19 C13 180.0 180.2
H19 C14 C15 H1 0.6 0.0
N11 C22 H20 C23 241.6 240.0
N11 C22 H20 H21 120.8 119.9
H20 C22 C23 C24 4.5 331.3
C23 C22 H20 H21 239.2 239.9
N11 C22 H21 C23 118.4 120.0
N11 C22 H21 H20 239.2 240.1
H21 C22 C23 C24 244.0 211.2
C23 C22 H21 H20 120.8 120.1
C23 C24 H22 C25 180.0 180.0
H22 C24 C25 O26 0.1 0.0
O28 C27 H23 H24 121.2 237.1
O28 C27 H24 H23 238.8 122.8
H26 C31 C30 H25 359.9 359.7
H27 C33 C32 C37 178.8 180.2
H28 C34 C33 H27 0.6 0.0
H28 C34 C35 C36 180.0 180.0
H28 C34 C35 H29 360.0 0.0
C34 C35 H29 C36 180.0 180.0
H29 C35 C34 H28 360.0 0.0
H29 C35 C36 C37 180.1 179.7
H29 C35 C36 H30 0.1 0.0
C35 C36 H30 C37 180.0 179.7
H30 C36 C35 H29 0.1 0.0
H30 C36 C37 H31 359.3 0.0
C32 C37 H31 C36 180.0 179.7
H31 C37 C36 H30 359.3 0.0
H32 C39 C38 C43 181.2 180.2
H33 C40 C39 H32 359.3 0.0
H33 C40 C41 C42 180.2 180.1
H33 C40 C41 H34 0.2 0.0
C40 C41 H34 C42 180.0 180.0
H34 C41 C40 H33 0.2 0.0
H34 C41 C42 C43 179.9 179.7
H34 C41 C42 H35 359.9 0.1
C41 C42 H35 C43 180.0 179.7
H35 C42 C41 H34 359.9 0.1
H35 C42 C43 H36 0.5 360.0
C38 C43 H36 C42 180.0 179.7
H36 C43 C42 H35 0.5 360.0