PDB Chemical Component 9O9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9O9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C2 |
1.236 |
1.218 |
| OBA |
CAU |
1.447 |
1.429 |
| C2 |
N1 |
1.359 |
1.329 |
| C2 |
N3 |
1.388 |
1.341 |
| N1 |
C6 |
1.364 |
1.327 |
| N3 |
C4 |
1.352 |
1.354 |
| OAY |
CAT |
1.397 |
1.429 |
| CAU |
CAT |
1.516 |
1.530 |
| CAU |
CAV |
1.498 |
1.530 |
| CAW |
CAV |
1.582 |
1.530 |
| CAW |
OAX |
1.382 |
1.429 |
| CAT |
CAS |
1.483 |
1.530 |
| CAS |
NAG |
1.503 |
1.464 |
| CAV |
OAZ |
1.469 |
1.429 |
| OAX |
PBB |
1.611 |
1.610 |
| C6 |
NAG |
1.337 |
1.362 |
| C6 |
C5 |
1.430 |
1.466 |
| C4 |
O4 |
1.263 |
1.217 |
| C4 |
C5 |
1.389 |
1.472 |
| NAG |
CAD |
1.399 |
1.379 |
| C5 |
CAJ |
1.396 |
1.379 |
| OBE |
PBB |
1.509 |
1.480 |
| PBB |
OBD |
1.509 |
1.610 |
| PBB |
OBC |
1.504 |
1.610 |
| CAD |
CAC |
1.382 |
1.393 |
| CAD |
CAE |
1.437 |
1.409 |
| CAJ |
CAE |
1.408 |
1.415 |
| CAC |
CAB |
1.389 |
1.378 |
| CAE |
CAF |
1.408 |
1.404 |
| CAB |
CAP |
1.420 |
1.507 |
| CAB |
CAA |
1.395 |
1.389 |
| CAF |
CAA |
1.374 |
1.364 |
| CAA |
CAO |
1.483 |
1.507 |
| N3 |
H2 |
0.999 |
0.970 |
| CAC |
H3 |
1.080 |
1.080 |
| CAF |
H4 |
1.080 |
1.080 |
| CAJ |
H5 |
1.080 |
1.080 |
| CAO |
H6 |
1.100 |
1.090 |
| CAO |
H7 |
1.100 |
1.090 |
| CAO |
H8 |
1.100 |
1.090 |
| CAP |
H9 |
1.100 |
1.091 |
| CAP |
H10 |
1.100 |
1.089 |
| CAP |
H11 |
1.100 |
1.090 |
| CAS |
H12 |
1.100 |
1.090 |
| CAS |
H13 |
1.100 |
1.091 |
| CAT |
H14 |
1.100 |
1.090 |
| CAU |
H15 |
1.100 |
1.090 |
| CAV |
H16 |
1.100 |
1.090 |
| CAW |
H17 |
1.100 |
1.090 |
| CAW |
H18 |
1.100 |
1.090 |
| OAY |
H19 |
0.950 |
0.966 |
| OAZ |
H20 |
0.950 |
0.967 |
| OBA |
H21 |
0.950 |
0.967 |
| OBC |
H22 |
0.950 |
0.967 |
| OBD |
H23 |
0.950 |
0.967 |
Bond Angles for 9O9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OBA |
CAU |
H15 |
109.9 |
109.5 |
| C2 |
N3 |
H2 |
118.6 |
119.5 |
| N1 |
C6 |
NAG |
117.4 |
121.9 |
| N3 |
C4 |
O4 |
117.2 |
121.4 |
| OAY |
CAT |
H14 |
108.3 |
109.5 |
| CAU |
CAT |
H14 |
106.8 |
109.5 |
| CAU |
CAV |
OAZ |
106.9 |
109.4 |
| CAV |
CAU |
H15 |
109.2 |
109.5 |
| CAU |
CAV |
H16 |
112.1 |
109.5 |
| CAW |
CAV |
OAZ |
107.6 |
109.4 |
| CAW |
CAV |
H16 |
110.9 |
109.5 |
| CAW |
OAX |
PBB |
122.5 |
123.0 |
| OAX |
CAW |
H17 |
109.0 |
109.5 |
| OAX |
CAW |
H18 |
109.0 |
109.5 |
| CAT |
CAS |
NAG |
114.4 |
109.5 |
| CAT |
CAS |
H12 |
108.3 |
109.5 |
| CAT |
CAS |
H13 |
108.2 |
109.4 |
| C6 |
NAG |
CAS |
120.0 |
119.8 |
| NAG |
CAS |
H12 |
108.2 |
109.5 |
| NAG |
CAS |
H13 |
108.2 |
109.5 |
| OAZ |
CAV |
H16 |
112.5 |
109.5 |
| CAV |
OAZ |
H20 |
109.5 |
114.0 |
| OAX |
PBB |
OBE |
115.1 |
109.5 |
| OAX |
PBB |
OBD |
96.0 |
109.5 |
| OAX |
PBB |
OBC |
106.0 |
109.5 |
| C6 |
NAG |
CAD |
121.5 |
120.4 |
| C6 |
C5 |
CAJ |
118.6 |
120.0 |
| C5 |
C4 |
O4 |
122.3 |
121.4 |
| C4 |
C5 |
CAJ |
124.9 |
122.3 |
| C5 |
CAJ |
CAE |
120.1 |
118.8 |
| C5 |
CAJ |
H5 |
119.9 |
120.6 |
| PBB |
OBD |
H23 |
109.5 |
114.0 |
| PBB |
OBC |
H22 |
109.5 |
114.0 |
| CAD |
CAC |
H3 |
119.0 |
120.1 |
| CAD |
CAE |
CAF |
117.8 |
119.7 |
| CAC |
CAB |
CAP |
117.9 |
119.6 |
| CAE |
CAF |
H4 |
118.7 |
120.1 |
| CAB |
CAP |
H9 |
109.5 |
109.5 |
| CAB |
CAP |
H10 |
109.4 |
109.5 |
| CAB |
CAP |
H11 |
109.5 |
109.5 |
| CAB |
CAA |
CAO |
120.3 |
119.7 |
| CAF |
CAA |
CAO |
120.9 |
119.8 |
| CAA |
CAO |
H6 |
109.5 |
109.4 |
| CAA |
CAO |
H7 |
109.5 |
109.4 |
| CAA |
CAO |
H8 |
109.4 |
109.5 |
| H6 |
CAO |
H7 |
109.5 |
109.5 |
| H6 |
CAO |
H8 |
109.5 |
109.5 |
| H7 |
CAO |
H8 |
109.5 |
109.5 |
| H9 |
CAP |
H10 |
109.5 |
109.5 |
| H9 |
CAP |
H11 |
109.4 |
109.4 |
| H10 |
CAP |
H11 |
109.5 |
109.5 |
| H12 |
CAS |
H13 |
109.5 |
109.4 |
| H17 |
CAW |
H18 |
109.4 |
109.4 |
Torsion Angles for 9O9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C2 |
N3 |
H2 |
359.6 |
360.0 |
| OBA |
CAU |
CAT |
H14 |
169.3 |
60.0 |
| CAV |
CAU |
OBA |
H15 |
241.4 |
240.0 |
| OBA |
CAU |
CAV |
H16 |
320.9 |
300.0 |
| C2 |
N1 |
C6 |
NAG |
182.1 |
180.0 |
| C2 |
N3 |
C4 |
O4 |
181.9 |
179.7 |
| N1 |
C6 |
NAG |
CAS |
354.8 |
360.0 |
| N1 |
C6 |
NAG |
CAD |
176.2 |
179.9 |
| N1 |
C6 |
C5 |
CAJ |
179.3 |
180.0 |
| C5 |
C4 |
N3 |
O4 |
179.4 |
179.8 |
| N3 |
C4 |
C5 |
CAJ |
180.1 |
180.3 |
| CAU |
CAT |
OAY |
H14 |
245.1 |
240.0 |
| OAY |
CAT |
CAS |
H12 |
53.4 |
60.0 |
| OAY |
CAT |
CAS |
H13 |
172.0 |
180.0 |
| OAY |
CAT |
CAU |
H14 |
115.9 |
120.0 |
| CAU |
CAT |
CAS |
NAG |
170.0 |
180.0 |
| CAU |
CAT |
CAS |
H12 |
290.7 |
300.1 |
| CAU |
CAT |
CAS |
H13 |
49.3 |
60.0 |
| OBA |
CAU |
CAV |
H15 |
119.1 |
119.9 |
| CAV |
CAU |
CAT |
H14 |
50.5 |
300.1 |
| CAW |
CAV |
CAU |
OAZ |
245.2 |
240.0 |
| CAW |
CAV |
CAU |
H16 |
121.4 |
120.0 |
| OAZ |
CAV |
CAU |
H16 |
236.3 |
240.0 |
| CAU |
CAV |
OAZ |
H20 |
180.0 |
300.0 |
| CAU |
CAV |
CAW |
OAZ |
114.3 |
120.0 |
| CAW |
CAV |
CAU |
H15 |
323.2 |
300.1 |
| CAU |
CAV |
CAW |
H16 |
237.8 |
239.9 |
| OAZ |
CAV |
CAW |
H16 |
123.5 |
120.0 |
| CAW |
CAV |
OAZ |
H20 |
294.1 |
60.1 |
| OAX |
CAW |
CAV |
OAZ |
65.0 |
65.0 |
| OAX |
CAW |
CAV |
H16 |
301.6 |
305.0 |
| CAW |
OAX |
PBB |
OBE |
311.6 |
305.0 |
| CAW |
OAX |
PBB |
OBD |
192.8 |
185.0 |
| CAW |
OAX |
PBB |
OBC |
76.8 |
65.0 |
| H17 |
CAW |
OAX |
H18 |
119.4 |
120.0 |
| C6 |
NAG |
CAS |
CAT |
94.3 |
90.0 |
| NAG |
CAS |
CAT |
H12 |
239.3 |
239.9 |
| NAG |
CAS |
CAT |
H13 |
120.7 |
120.0 |
| H12 |
CAS |
CAT |
H13 |
241.4 |
240.1 |
| CAT |
CAS |
NAG |
H12 |
120.7 |
120.1 |
| CAT |
CAS |
NAG |
H13 |
239.3 |
240.0 |
| C6 |
NAG |
CAS |
CAD |
181.4 |
180.0 |
| H12 |
CAS |
NAG |
H13 |
118.6 |
120.0 |
| OAZ |
CAV |
CAU |
H15 |
78.0 |
60.0 |
| CAU |
CAV |
OAZ |
H16 |
123.5 |
120.0 |
| CAW |
CAV |
OAZ |
H16 |
237.6 |
240.1 |
| PBB |
OAX |
CAW |
H17 |
144.0 |
60.0 |
| PBB |
OAX |
CAW |
H18 |
24.7 |
300.0 |
| OAX |
PBB |
OBD |
H23 |
120.5 |
180.0 |
| OAX |
PBB |
OBC |
H22 |
233.2 |
60.0 |
| CAT |
CAS |
NAG |
C6 |
94.3 |
90.0 |
| C6 |
NAG |
CAS |
H12 |
333.6 |
330.0 |
| C6 |
NAG |
CAS |
H13 |
215.0 |
210.0 |
| NAG |
C6 |
C5 |
CAJ |
357.3 |
360.0 |
| C6 |
C5 |
C4 |
O4 |
178.0 |
180.0 |
| C4 |
C5 |
C6 |
CAJ |
181.3 |
180.0 |
| C6 |
C5 |
CAJ |
CAE |
4.6 |
0.1 |
| C6 |
C5 |
CAJ |
H5 |
184.6 |
180.0 |
| O4 |
C4 |
C5 |
CAJ |
359.4 |
0.0 |
| N3 |
C4 |
C5 |
O4 |
180.7 |
180.2 |
| C6 |
C5 |
C4 |
CAJ |
178.6 |
180.0 |
| C4 |
C5 |
CAJ |
CAE |
183.2 |
180.0 |
| C4 |
C5 |
CAJ |
H5 |
3.2 |
359.9 |
| C6 |
NAG |
CAD |
CAS |
178.6 |
180.0 |
| NAG |
CAD |
CAC |
H3 |
1.8 |
360.0 |
| CAJ |
C5 |
C4 |
O4 |
359.4 |
0.0 |
| OAX |
PBB |
OBE |
OBD |
251.1 |
240.0 |
| OAX |
PBB |
OBE |
OBC |
121.7 |
120.0 |
| OBE |
PBB |
OBD |
H23 |
360.0 |
60.0 |
| OBE |
PBB |
OBC |
H22 |
360.0 |
179.9 |
| OAX |
PBB |
OBD |
OBE |
120.5 |
120.0 |
| OAX |
PBB |
OBD |
OBC |
249.7 |
240.0 |
| OBD |
PBB |
OBC |
H22 |
129.3 |
300.0 |
| OAX |
PBB |
OBC |
OBE |
233.3 |
240.0 |
| OAX |
PBB |
OBC |
OBD |
103.9 |
120.0 |
| C6 |
NAG |
CAD |
CAC |
184.4 |
180.0 |
| CAD |
CAC |
CAB |
CAP |
180.1 |
180.0 |
| C6 |
NAG |
CAD |
CAE |
4.4 |
0.0 |
| C5 |
CAJ |
CAE |
CAD |
357.9 |
359.9 |
| CAE |
CAD |
CAC |
H3 |
181.9 |
180.0 |
| CAD |
CAE |
CAF |
H4 |
177.5 |
180.0 |
| C5 |
CAJ |
CAE |
H5 |
180.0 |
179.9 |
| CAJ |
CAE |
CAF |
H4 |
0.2 |
0.0 |
| CAC |
CAB |
CAP |
H9 |
89.1 |
269.9 |
| CAC |
CAB |
CAP |
H10 |
209.1 |
29.9 |
| CAC |
CAB |
CAP |
H11 |
329.1 |
150.0 |
| CAC |
CAB |
CAA |
CAO |
182.4 |
180.0 |
| C5 |
CAJ |
CAE |
CAF |
175.1 |
180.0 |
| CAE |
CAF |
CAA |
CAO |
179.8 |
180.0 |
| CAP |
CAB |
CAA |
CAO |
0.4 |
359.9 |
| H9 |
CAP |
CAB |
H10 |
240.0 |
240.0 |
| H9 |
CAP |
CAB |
H11 |
120.0 |
120.0 |
| H10 |
CAP |
CAB |
H11 |
240.0 |
240.0 |
| CAF |
CAA |
CAB |
CAO |
177.2 |
180.1 |
| CAB |
CAA |
CAO |
H6 |
88.6 |
90.0 |
| CAB |
CAA |
CAO |
H7 |
208.6 |
210.0 |
| CAB |
CAA |
CAO |
H8 |
328.5 |
330.0 |
| CAB |
CAA |
CAF |
CAO |
182.9 |
179.9 |
| CAF |
CAA |
CAO |
H6 |
271.5 |
270.0 |
| CAF |
CAA |
CAO |
H7 |
31.5 |
30.0 |
| CAF |
CAA |
CAO |
H8 |
151.5 |
149.9 |
| H6 |
CAO |
CAA |
H7 |
240.0 |
240.0 |
| H6 |
CAO |
CAA |
H8 |
120.0 |
120.0 |
| H7 |
CAO |
CAA |
H8 |
240.0 |
240.0 |
| H2 |
N3 |
C4 |
O4 |
1.9 |
360.0 |
| H3 |
CAC |
CAB |
CAP |
0.1 |
0.1 |
| H4 |
CAF |
CAA |
CAO |
359.8 |
360.0 |
| C5 |
CAJ |
H5 |
CAE |
180.0 |
180.1 |
| CAA |
CAO |
H6 |
H7 |
120.0 |
119.9 |
| CAA |
CAO |
H6 |
H8 |
240.0 |
240.0 |
| H7 |
CAO |
H6 |
H8 |
120.0 |
120.0 |
| CAA |
CAO |
H7 |
H6 |
240.0 |
240.0 |
| CAA |
CAO |
H7 |
H8 |
120.0 |
120.0 |
| H6 |
CAO |
H7 |
H8 |
240.0 |
240.0 |
| CAA |
CAO |
H8 |
H6 |
120.0 |
120.0 |
| CAA |
CAO |
H8 |
H7 |
240.0 |
240.0 |
| H6 |
CAO |
H8 |
H7 |
120.0 |
120.0 |
| CAB |
CAP |
H9 |
H10 |
120.0 |
120.0 |
| CAB |
CAP |
H9 |
H11 |
240.0 |
240.0 |
| H10 |
CAP |
H9 |
H11 |
120.0 |
120.0 |
| CAB |
CAP |
H10 |
H9 |
240.0 |
240.0 |
| CAB |
CAP |
H10 |
H11 |
120.0 |
120.0 |
| H9 |
CAP |
H10 |
H11 |
240.0 |
240.0 |
| CAB |
CAP |
H11 |
H9 |
120.0 |
120.0 |
| CAB |
CAP |
H11 |
H10 |
240.0 |
240.0 |
| H9 |
CAP |
H11 |
H10 |
120.0 |
120.0 |
| CAT |
CAS |
H12 |
NAG |
235.5 |
239.9 |
| CAT |
CAS |
H12 |
H13 |
117.8 |
119.9 |
| NAG |
CAS |
H12 |
H13 |
242.2 |
240.0 |
| CAT |
CAS |
H13 |
NAG |
124.5 |
120.0 |
| CAT |
CAS |
H13 |
H12 |
242.2 |
240.0 |
| NAG |
CAS |
H13 |
H12 |
117.7 |
120.0 |
| H14 |
CAT |
CAS |
NAG |
51.5 |
59.9 |
| H14 |
CAT |
CAS |
H12 |
172.2 |
180.0 |
| H14 |
CAT |
CAS |
H13 |
290.8 |
299.9 |
| H15 |
CAU |
CAT |
H14 |
288.6 |
180.0 |
| H15 |
CAU |
CAV |
OAZ |
78.0 |
60.0 |
| H15 |
CAU |
CAV |
H16 |
201.8 |
180.0 |
| CAU |
CAV |
H16 |
OAZ |
239.5 |
240.0 |
| H16 |
CAV |
CAU |
H15 |
201.8 |
180.0 |
| CAW |
CAV |
H16 |
OAZ |
120.6 |
119.9 |
| H16 |
CAV |
OAZ |
H20 |
56.6 |
180.0 |
| H17 |
CAW |
CAV |
OAZ |
185.4 |
185.0 |
| H17 |
CAW |
CAV |
H16 |
61.9 |
65.1 |
| H17 |
CAW |
OAX |
PBB |
144.0 |
60.0 |
| OAX |
CAW |
H17 |
H18 |
240.9 |
240.0 |
| H18 |
CAW |
CAV |
OAZ |
304.7 |
304.9 |
| H18 |
CAW |
CAV |
H16 |
181.3 |
185.0 |
| H18 |
CAW |
OAX |
PBB |
24.7 |
300.0 |
| OAX |
CAW |
H18 |
H17 |
119.1 |
120.0 |
| H19 |
OAY |
CAT |
H14 |
294.9 |
180.0 |
| H20 |
OAZ |
CAV |
H16 |
56.6 |
180.0 |
| H21 |
OBA |
CAU |
H15 |
61.3 |
180.0 |