PDB Chemical Component 9NT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9NT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N4 |
C7 |
1.498 |
1.469 |
N4 |
C3 |
1.494 |
1.469 |
C7 |
C8 |
1.524 |
1.507 |
C8 |
O9 |
1.231 |
1.213 |
C8 |
N10 |
1.343 |
1.347 |
N10 |
C11 |
1.415 |
1.401 |
C11 |
C16 |
1.393 |
1.388 |
C11 |
C12 |
1.389 |
1.389 |
C16 |
C15 |
1.384 |
1.382 |
C12 |
C13 |
1.374 |
1.384 |
C15 |
C14 |
1.377 |
1.385 |
C13 |
C14 |
1.377 |
1.393 |
C13 |
O17 |
1.381 |
1.365 |
C14 |
O19 |
1.362 |
1.366 |
O17 |
C18 |
1.403 |
1.440 |
O19 |
C18 |
1.442 |
1.440 |
C3 |
H3 |
1.100 |
1.089 |
C3 |
H1 |
1.100 |
1.090 |
C7 |
H7A |
1.100 |
1.089 |
C7 |
H7 |
1.100 |
1.090 |
N10 |
HN10 |
1.000 |
0.970 |
C12 |
H12 |
1.080 |
1.080 |
C15 |
H4 |
1.080 |
1.080 |
C16 |
H16 |
1.080 |
1.079 |
C18 |
H18A |
1.100 |
1.089 |
C18 |
H18 |
1.100 |
1.090 |
C3 |
C1 |
|
1.531 |
C1 |
C2 |
|
1.531 |
C2 |
C4 |
|
1.531 |
C4 |
C6 |
|
1.529 |
N4 |
C6 |
|
1.468 |
C1 |
H2 |
|
1.090 |
C1 |
H5 |
|
1.090 |
C2 |
H6 |
|
1.090 |
C2 |
H8 |
|
1.090 |
C4 |
H9 |
|
1.090 |
C4 |
H10 |
|
1.089 |
C6 |
H11 |
|
1.090 |
C6 |
H13 |
|
1.090 |
N4 |
HN4 |
1.000 |
1.009 |
Bond Angles for 9NT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N4 |
C7 |
C8 |
108.6 |
109.5 |
N4 |
C7 |
H7A |
109.7 |
109.5 |
N4 |
C7 |
H7 |
109.7 |
109.4 |
C7 |
N4 |
C6 |
|
109.4 |
C7 |
N4 |
HN4 |
123.6 |
109.4 |
N4 |
C3 |
H3 |
102.3 |
109.4 |
N4 |
C3 |
H1 |
102.4 |
109.4 |
N4 |
C3 |
C1 |
|
109.6 |
C7 |
C8 |
O9 |
121.2 |
120.0 |
C7 |
C8 |
N10 |
114.3 |
120.0 |
C8 |
C7 |
H7A |
109.7 |
109.5 |
C8 |
C7 |
H7 |
109.7 |
109.5 |
O9 |
C8 |
N10 |
124.5 |
120.0 |
C8 |
N10 |
C11 |
127.4 |
120.0 |
C8 |
N10 |
HN10 |
116.3 |
120.0 |
N10 |
C11 |
C16 |
117.6 |
120.0 |
N10 |
C11 |
C12 |
122.0 |
120.0 |
C11 |
N10 |
HN10 |
116.3 |
120.0 |
C12 |
C11 |
C16 |
120.4 |
120.0 |
C11 |
C16 |
C15 |
120.8 |
120.1 |
C11 |
C16 |
H16 |
119.6 |
119.9 |
C11 |
C12 |
C13 |
118.2 |
119.9 |
C11 |
C12 |
H12 |
120.9 |
120.0 |
C16 |
C15 |
H4 |
121.0 |
119.9 |
C12 |
C13 |
C14 |
121.1 |
119.9 |
C12 |
C13 |
O17 |
128.5 |
131.4 |
C13 |
C12 |
H12 |
120.9 |
120.1 |
C15 |
C14 |
O19 |
128.5 |
131.4 |
C14 |
C13 |
O17 |
110.4 |
108.6 |
C13 |
C14 |
O19 |
109.8 |
108.6 |
C13 |
O17 |
C18 |
105.2 |
105.5 |
C14 |
O19 |
C18 |
105.3 |
105.5 |
O17 |
C18 |
H18A |
109.6 |
110.6 |
O17 |
C18 |
H18 |
109.5 |
110.5 |
O19 |
C18 |
H18A |
109.5 |
110.6 |
O19 |
C18 |
H18 |
109.5 |
110.7 |
H3 |
C3 |
H1 |
109.5 |
109.5 |
H3 |
C3 |
C1 |
|
109.5 |
H1 |
C3 |
C1 |
|
109.4 |
H7A |
C7 |
H7 |
109.5 |
109.5 |
H18A |
C18 |
H18 |
109.5 |
110.5 |
C3 |
C1 |
C2 |
|
109.3 |
C3 |
C1 |
H2 |
|
109.5 |
C3 |
C1 |
H5 |
|
109.5 |
C1 |
C2 |
C4 |
|
109.1 |
C2 |
C1 |
H2 |
|
109.5 |
C2 |
C1 |
H5 |
|
109.6 |
C1 |
C2 |
H6 |
|
109.5 |
C1 |
C2 |
H8 |
|
109.5 |
C2 |
C4 |
C6 |
|
109.3 |
C4 |
C2 |
H6 |
|
109.5 |
C4 |
C2 |
H8 |
|
109.5 |
C2 |
C4 |
H9 |
|
109.5 |
C2 |
C4 |
H10 |
|
109.5 |
N4 |
C6 |
C4 |
|
109.7 |
C6 |
C4 |
H9 |
|
109.5 |
C6 |
C4 |
H10 |
|
109.5 |
C4 |
C6 |
H11 |
|
109.5 |
C4 |
C6 |
H13 |
|
109.4 |
N4 |
C6 |
H11 |
|
109.4 |
N4 |
C6 |
H13 |
|
109.4 |
C6 |
N4 |
HN4 |
|
109.4 |
H2 |
C1 |
H5 |
|
109.5 |
H6 |
C2 |
H8 |
|
109.6 |
H9 |
C4 |
H10 |
|
109.6 |
H11 |
C6 |
H13 |
|
109.4 |
Torsion Angles for 9NT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C7 |
N4 |
C3 |
H3 |
247.3 |
303.3 |
C7 |
N4 |
C3 |
H1 |
0.7 |
63.3 |
C7 |
N4 |
C3 |
C1 |
|
183.2 |
N4 |
C7 |
C8 |
O9 |
344.4 |
360.0 |
N4 |
C7 |
C8 |
N10 |
164.3 |
180.0 |
C8 |
C7 |
N4 |
H7A |
240.1 |
240.0 |
C8 |
C7 |
N4 |
H7 |
119.8 |
120.0 |
H7A |
C7 |
N4 |
H7 |
239.7 |
240.0 |
C7 |
N4 |
C6 |
C4 |
|
176.7 |
C7 |
N4 |
C6 |
H11 |
|
296.8 |
C7 |
N4 |
C6 |
H13 |
|
56.7 |
C6 |
N4 |
C7 |
HN4 |
|
240.2 |
H3 |
C3 |
N4 |
H1 |
246.6 |
240.0 |
H3 |
C3 |
N4 |
C1 |
|
120.1 |
H1 |
C3 |
N4 |
C1 |
|
240.1 |
N4 |
C3 |
C1 |
C2 |
|
300.1 |
N4 |
C3 |
C1 |
H2 |
|
60.0 |
N4 |
C3 |
C1 |
H5 |
|
180.1 |
N4 |
C7 |
C8 |
H7A |
119.8 |
120.0 |
N4 |
C7 |
C8 |
H7 |
240.1 |
240.0 |
C8 |
C7 |
N4 |
C6 |
|
295.3 |
C8 |
C7 |
N4 |
HN4 |
93.1 |
55.2 |
O9 |
C8 |
C7 |
N10 |
180.1 |
179.9 |
C7 |
C8 |
N10 |
C11 |
178.2 |
174.7 |
C7 |
C8 |
N10 |
HN10 |
358.2 |
354.7 |
H7A |
C7 |
C8 |
H7 |
120.3 |
120.0 |
C7 |
C8 |
O9 |
N10 |
179.9 |
180.1 |
O9 |
C8 |
C7 |
H7A |
224.5 |
240.0 |
O9 |
C8 |
C7 |
H7 |
104.3 |
119.9 |
O9 |
C8 |
N10 |
C11 |
358.1 |
354.8 |
O9 |
C8 |
N10 |
HN10 |
178.1 |
174.7 |
C7 |
C8 |
N10 |
O9 |
180.1 |
179.9 |
N10 |
C8 |
C7 |
H7A |
44.4 |
60.0 |
N10 |
C8 |
C7 |
H7 |
284.2 |
300.0 |
C8 |
N10 |
C11 |
C16 |
169.9 |
326.6 |
C8 |
N10 |
C11 |
C12 |
350.1 |
146.9 |
C11 |
N10 |
C8 |
HN10 |
180.0 |
180.1 |
C8 |
N10 |
C11 |
HN10 |
180.0 |
179.9 |
C12 |
C11 |
N10 |
C16 |
180.2 |
180.3 |
N10 |
C11 |
C16 |
C15 |
179.9 |
179.8 |
N10 |
C11 |
C16 |
H16 |
359.9 |
0.1 |
N10 |
C11 |
C12 |
C13 |
177.3 |
180.0 |
N10 |
C11 |
C12 |
H12 |
357.3 |
359.9 |
N10 |
C11 |
C16 |
C12 |
180.2 |
180.3 |
C16 |
C11 |
N10 |
HN10 |
349.8 |
146.6 |
C16 |
C11 |
C12 |
C13 |
357.5 |
0.3 |
C16 |
C11 |
C12 |
H12 |
177.5 |
180.3 |
C11 |
C16 |
C15 |
H4 |
181.9 |
180.3 |
N10 |
C11 |
C12 |
C16 |
179.8 |
179.7 |
C12 |
C11 |
N10 |
HN10 |
170.1 |
327.0 |
C12 |
C11 |
C16 |
C15 |
359.7 |
359.4 |
C12 |
C11 |
C16 |
H16 |
179.7 |
179.7 |
C11 |
C12 |
C13 |
C14 |
3.6 |
359.9 |
C11 |
C12 |
C13 |
O17 |
186.2 |
180.0 |
C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
C11 |
C16 |
C15 |
H16 |
180.0 |
180.3 |
C16 |
C15 |
C14 |
O19 |
174.6 |
179.8 |
C13 |
C12 |
C11 |
C16 |
357.5 |
0.3 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
C14 |
C13 |
C12 |
O17 |
177.4 |
179.9 |
C12 |
C13 |
C14 |
O19 |
181.8 |
180.0 |
C12 |
C13 |
O17 |
C18 |
176.6 |
162.7 |
C11 |
C16 |
C15 |
C14 |
1.9 |
0.5 |
C15 |
C14 |
C13 |
O17 |
175.8 |
180.0 |
C13 |
C14 |
C15 |
O19 |
184.7 |
180.0 |
C15 |
C14 |
O19 |
C18 |
185.7 |
197.3 |
C12 |
C13 |
C14 |
O17 |
182.1 |
180.1 |
C14 |
C13 |
C12 |
H12 |
183.6 |
180.0 |
C15 |
C14 |
C13 |
O19 |
176.1 |
180.0 |
C14 |
C13 |
O17 |
C18 |
358.9 |
342.7 |
C13 |
C14 |
O19 |
C18 |
1.5 |
17.3 |
C12 |
C13 |
O17 |
C14 |
177.6 |
179.9 |
O17 |
C13 |
C12 |
H12 |
6.2 |
0.0 |
O17 |
C13 |
C14 |
O19 |
359.7 |
359.9 |
C13 |
O17 |
C18 |
H18A |
121.9 |
145.7 |
C13 |
O17 |
C18 |
H18 |
242.0 |
268.4 |
O19 |
C14 |
C13 |
O17 |
359.7 |
359.9 |
C14 |
O19 |
C18 |
H18A |
237.8 |
214.3 |
C14 |
O19 |
C18 |
H18 |
117.8 |
91.4 |
C14 |
O19 |
C18 |
O17 |
357.8 |
332.9 |
O19 |
C18 |
O17 |
H18A |
240.0 |
241.4 |
O19 |
C18 |
O17 |
H18 |
120.0 |
118.7 |
H18A |
C18 |
O17 |
H18 |
239.9 |
237.3 |
O17 |
C18 |
O19 |
H18A |
120.0 |
118.6 |
O17 |
C18 |
O19 |
H18 |
240.0 |
241.4 |
H18A |
C18 |
O19 |
H18 |
120.0 |
122.8 |
N4 |
C3 |
H3 |
H1 |
108.1 |
119.9 |
N4 |
C3 |
H3 |
C1 |
|
239.9 |
H1 |
C3 |
H3 |
C1 |
|
119.9 |
H3 |
C3 |
C1 |
C2 |
|
180.0 |
H3 |
C3 |
C1 |
H2 |
|
300.0 |
H3 |
C3 |
C1 |
H5 |
|
60.0 |
N4 |
C3 |
H1 |
H3 |
252.0 |
240.1 |
N4 |
C3 |
H1 |
C1 |
|
120.1 |
H3 |
C3 |
H1 |
C1 |
|
240.0 |
H1 |
C3 |
C1 |
C2 |
|
60.0 |
H1 |
C3 |
C1 |
H2 |
|
180.0 |
H1 |
C3 |
C1 |
H5 |
|
300.0 |
N4 |
C7 |
H7A |
C8 |
240.8 |
240.0 |
N4 |
C7 |
H7A |
H7 |
120.4 |
120.0 |
H7A |
C7 |
N4 |
C6 |
|
55.3 |
H7A |
C7 |
N4 |
HN4 |
212.9 |
175.2 |
H7A |
C7 |
C8 |
O9 |
224.5 |
240.0 |
H7A |
C7 |
C8 |
N10 |
44.4 |
60.0 |
C8 |
C7 |
H7A |
H7 |
239.6 |
240.0 |
N4 |
C7 |
H7 |
C8 |
119.2 |
120.0 |
N4 |
C7 |
H7 |
H7A |
239.6 |
240.0 |
H7 |
C7 |
N4 |
C6 |
|
175.4 |
H7 |
C7 |
N4 |
HN4 |
333.2 |
295.2 |
H7 |
C7 |
C8 |
O9 |
104.3 |
119.9 |
H7 |
C7 |
C8 |
N10 |
284.2 |
300.0 |
C8 |
C7 |
H7 |
H7A |
120.4 |
120.0 |
C8 |
N10 |
HN10 |
C11 |
180.0 |
180.1 |
HN10 |
N10 |
C11 |
C16 |
349.8 |
146.6 |
HN10 |
N10 |
C11 |
C12 |
170.1 |
327.0 |
H12 |
C12 |
C11 |
C16 |
177.5 |
180.3 |
C11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
H12 |
C12 |
C13 |
C14 |
183.6 |
180.0 |
H12 |
C12 |
C13 |
O17 |
6.2 |
0.0 |
H4 |
C15 |
C14 |
O19 |
354.6 |
0.0 |
C11 |
C16 |
H16 |
C15 |
180.0 |
179.7 |
H16 |
C16 |
C15 |
H4 |
1.9 |
360.0 |
O17 |
C18 |
H18A |
H18 |
120.1 |
122.7 |
O19 |
C18 |
H18A |
H18 |
239.9 |
237.0 |
O17 |
C18 |
H18 |
H18A |
239.9 |
237.2 |
O19 |
C18 |
H18 |
H18A |
120.1 |
122.9 |
N4 |
C3 |
C1 |
H3 |
|
120.0 |
N4 |
C3 |
C1 |
H1 |
|
240.0 |
H3 |
C3 |
C1 |
H1 |
|
120.0 |
C3 |
C1 |
C2 |
C4 |
|
56.9 |
C2 |
C1 |
C3 |
H2 |
|
240.0 |
C2 |
C1 |
C3 |
H5 |
|
120.0 |
C3 |
C1 |
C2 |
H6 |
|
176.8 |
C3 |
C1 |
C2 |
H8 |
|
297.0 |
H2 |
C1 |
C3 |
H5 |
|
239.9 |
C3 |
C1 |
C2 |
H2 |
|
119.9 |
C3 |
C1 |
C2 |
H5 |
|
240.1 |
C1 |
C2 |
C4 |
C6 |
|
303.1 |
C4 |
C2 |
C1 |
H6 |
|
240.1 |
C4 |
C2 |
C1 |
H8 |
|
119.9 |
C1 |
C2 |
C4 |
H9 |
|
63.0 |
C1 |
C2 |
C4 |
H10 |
|
183.1 |
H2 |
C1 |
C2 |
H5 |
|
120.1 |
H6 |
C2 |
C1 |
H8 |
|
239.8 |
C4 |
C2 |
C1 |
H2 |
|
297.0 |
C4 |
C2 |
C1 |
H5 |
|
176.8 |
C1 |
C2 |
C4 |
H6 |
|
119.9 |
C1 |
C2 |
C4 |
H8 |
|
240.1 |
N4 |
C6 |
C4 |
C2 |
|
59.9 |
C6 |
C4 |
C2 |
H9 |
|
240.1 |
C6 |
C4 |
C2 |
H10 |
|
120.0 |
C2 |
C4 |
C6 |
H11 |
|
299.9 |
C2 |
C4 |
C6 |
H13 |
|
180.0 |
H6 |
C2 |
C4 |
H8 |
|
120.2 |
H9 |
C4 |
C2 |
H10 |
|
239.9 |
C6 |
C4 |
C2 |
H6 |
|
183.2 |
C6 |
C4 |
C2 |
H8 |
|
63.0 |
C2 |
C4 |
C6 |
H9 |
|
119.9 |
C2 |
C4 |
C6 |
H10 |
|
240.0 |
N4 |
C6 |
C4 |
H11 |
|
120.1 |
N4 |
C6 |
C4 |
H13 |
|
240.0 |
C4 |
C6 |
N4 |
HN4 |
|
56.9 |
H9 |
C4 |
C6 |
H10 |
|
120.1 |
H11 |
C6 |
C4 |
H13 |
|
119.9 |
C6 |
N4 |
C7 |
C8 |
|
295.3 |
C6 |
N4 |
C7 |
H7A |
|
55.3 |
C6 |
N4 |
C7 |
H7 |
|
175.4 |
C7 |
N4 |
C6 |
HN4 |
|
119.9 |
C6 |
N4 |
C3 |
H3 |
|
183.2 |
C6 |
N4 |
C3 |
H1 |
|
303.2 |
C6 |
N4 |
C3 |
C1 |
|
63.1 |
C2 |
C4 |
C6 |
N4 |
|
59.9 |
N4 |
C6 |
C4 |
H9 |
|
300.1 |
N4 |
C6 |
C4 |
H10 |
|
179.9 |
C4 |
C6 |
N4 |
H11 |
|
239.9 |
C4 |
C6 |
N4 |
H13 |
|
120.0 |
H11 |
C6 |
N4 |
H13 |
|
240.1 |
C3 |
C1 |
H2 |
C2 |
|
240.2 |
C3 |
C1 |
H2 |
H5 |
|
120.0 |
H2 |
C1 |
C2 |
C4 |
|
297.0 |
C2 |
C1 |
H2 |
H5 |
|
239.8 |
H2 |
C1 |
C2 |
H6 |
|
56.9 |
H2 |
C1 |
C2 |
H8 |
|
177.1 |
C3 |
C1 |
H5 |
C2 |
|
119.8 |
C3 |
C1 |
H5 |
H2 |
|
240.0 |
H5 |
C1 |
C2 |
C4 |
|
176.8 |
C2 |
C1 |
H5 |
H2 |
|
120.2 |
H5 |
C1 |
C2 |
H6 |
|
296.8 |
H5 |
C1 |
C2 |
H8 |
|
57.0 |
C1 |
C2 |
H6 |
C4 |
|
240.3 |
H6 |
C2 |
C1 |
H2 |
|
56.9 |
H6 |
C2 |
C1 |
H5 |
|
296.8 |
C1 |
C2 |
H6 |
H8 |
|
120.2 |
H6 |
C2 |
C4 |
C6 |
|
183.2 |
C4 |
C2 |
H6 |
H8 |
|
239.8 |
H6 |
C2 |
C4 |
H9 |
|
303.1 |
H6 |
C2 |
C4 |
H10 |
|
63.2 |
C1 |
C2 |
H8 |
C4 |
|
119.6 |
H8 |
C2 |
C1 |
H2 |
|
177.1 |
H8 |
C2 |
C1 |
H5 |
|
57.0 |
C1 |
C2 |
H8 |
H6 |
|
239.8 |
H8 |
C2 |
C4 |
C6 |
|
63.0 |
C4 |
C2 |
H8 |
H6 |
|
120.2 |
H8 |
C2 |
C4 |
H9 |
|
182.9 |
H8 |
C2 |
C4 |
H10 |
|
303.0 |
C2 |
C4 |
H9 |
C6 |
|
240.2 |
H9 |
C4 |
C2 |
H6 |
|
303.1 |
H9 |
C4 |
C2 |
H8 |
|
182.9 |
C2 |
C4 |
H9 |
H10 |
|
120.1 |
C6 |
C4 |
H9 |
H10 |
|
239.9 |
H9 |
C4 |
C6 |
H11 |
|
180.0 |
H9 |
C4 |
C6 |
H13 |
|
60.1 |
C2 |
C4 |
H10 |
C6 |
|
119.8 |
H10 |
C4 |
C2 |
H6 |
|
63.2 |
H10 |
C4 |
C2 |
H8 |
|
303.0 |
C2 |
C4 |
H10 |
H9 |
|
239.9 |
C6 |
C4 |
H10 |
H9 |
|
120.1 |
H10 |
C4 |
C6 |
H11 |
|
59.9 |
H10 |
C4 |
C6 |
H13 |
|
299.9 |
N4 |
C6 |
H11 |
C4 |
|
239.8 |
H11 |
C6 |
C4 |
H9 |
|
180.0 |
H11 |
C6 |
C4 |
H10 |
|
59.9 |
C4 |
C6 |
H11 |
H13 |
|
240.1 |
N4 |
C6 |
H11 |
H13 |
|
119.9 |
H11 |
C6 |
N4 |
HN4 |
|
177.0 |
N4 |
C6 |
H13 |
C4 |
|
120.2 |
H13 |
C6 |
C4 |
H9 |
|
60.1 |
H13 |
C6 |
C4 |
H10 |
|
299.9 |
C4 |
C6 |
H13 |
H11 |
|
120.0 |
N4 |
C6 |
H13 |
H11 |
|
240.1 |
H13 |
C6 |
N4 |
HN4 |
|
296.9 |
HN4 |
N4 |
C7 |
C8 |
93.1 |
55.2 |
HN4 |
N4 |
C7 |
H7A |
212.9 |
175.2 |
HN4 |
N4 |
C7 |
H7 |
333.2 |
295.2 |
C7 |
N4 |
HN4 |
C6 |
|
240.1 |
HN4 |
N4 |
C3 |
H3 |
78.0 |
63.2 |
HN4 |
N4 |
C3 |
H1 |
191.5 |
183.1 |
HN4 |
N4 |
C3 |
C1 |
|
303.1 |
HN4 |
N4 |
C6 |
C4 |
|
56.9 |
HN4 |
N4 |
C6 |
H11 |
|
177.0 |
HN4 |
N4 |
C6 |
H13 |
|
296.9 |