PDB Chemical Component 9NF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9NF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.489 1.464
N S1 1.658 1.656
CA C 1.550 1.507
OXT C   1.342
O C   1.208
CA CB 1.562 1.530
CB CG 1.529 1.507
CG CD1 1.428 1.383
CG CD2 1.453 1.382
CD1 CE1 1.413 1.382
CD2 CE2 1.431 1.382
CE1 CZ 1.421 1.382
CE2 CZ 1.415 1.383
S1 O2 1.449 1.420
S1 O3 1.463 1.421
S1 C1 1.796 1.762
N1 C10 1.465 1.393
N1 C11 1.501 1.469
N1 C12 1.473 1.470
C1 C2 1.383 1.361
C1 C6 1.501 1.405
C2 C3 1.426 1.393
C3 C4 1.405 1.361
C4 C5 1.467 1.404
C5 C6 1.496 1.417
C5 C10 1.485 1.412
C6 C7 1.478 1.405
C7 C8 1.427 1.361
C8 C9 1.468 1.391
C9 C10 1.466 1.379
N H 1.000 0.970
CA HA 1.100 1.090
CB HB1C 1.100 1.090
CB HB2C 1.100 1.089
CD1 HD1 1.080 1.080
CD2 HD2 1.079 1.080
CE1 HE1 1.080 1.080
CE2 HE2 1.080 1.080
CZ HZ 1.080 1.080
C11 H111 1.100 1.089
C11 H112 1.100 1.090
C11 H113 1.100 1.090
C12 H121 1.100 1.089
C12 H122 1.100 1.090
C12 H123 1.100 1.089
C2 H2 1.080 1.080
C3 H3 1.080 1.080
C4 H4 1.080 1.080
C7 H7 1.080 1.081
C8 H8 1.080 1.080
C9 H9 1.080 1.080
OXT HXT   0.967

Bond Angles for 9NF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N S1 126.0 120.0
N CA C 113.3 109.5
N CA CB 106.6 109.5
CA N H 104.3 120.0
N CA HA 109.7 109.5
N S1 O2 108.2 106.4
N S1 O3 106.3 106.4
N S1 C1 104.9 107.2
S1 N H 104.3 120.0
C CA CB 111.7 109.5
C CA HA 104.3 109.5
CA CB CG 120.2 109.5
CB CA HA 111.3 109.5
CA CB HB1C 106.1 109.4
CA CB HB2C 103.5 109.5
CB CG CD1 119.8 120.0
CB CG CD2 122.1 120.0
CG CB HB1C 106.0 109.4
CG CB HB2C 103.6 109.5
CD1 CG CD2 118.1 120.0
CG CD1 CE1 121.3 120.0
CG CD1 HD1 119.3 120.0
CG CD2 CE2 120.1 120.0
CG CD2 HD2 119.9 120.0
CD1 CE1 CZ 120.2 120.0
CE1 CD1 HD1 119.4 120.0
CD1 CE1 HE1 119.9 120.0
CD2 CE2 CZ 120.2 120.0
CE2 CD2 HD2 120.0 120.0
CD2 CE2 HE2 119.9 120.0
CE1 CZ CE2 120.2 120.0
CZ CE1 HE1 119.9 120.0
CE1 CZ HZ 119.9 120.0
CZ CE2 HE2 119.9 120.0
CE2 CZ HZ 119.9 120.0
O2 S1 O3 117.3 123.1
O2 S1 C1 112.5 106.4
O3 S1 C1 106.8 106.4
S1 C1 C2 118.2 120.2
S1 C1 C6 119.4 120.1
C10 N1 C11 111.7 111.0
C10 N1 C12 114.6 111.0
N1 C10 C5 117.4 120.3
N1 C10 C9 124.6 120.3
C11 N1 C12 104.9 111.0
N1 C11 H111 109.5 109.5
N1 C11 H112 109.5 109.5
N1 C11 H113 109.4 109.4
N1 C12 H121 109.5 109.4
N1 C12 H122 109.4 109.4
N1 C12 H123 109.5 109.5
C2 C1 C6 122.4 119.7
C1 C2 C3 120.3 121.0
C1 C2 H2 119.8 119.5
C1 C6 C5 116.4 119.3
C1 C6 C7 126.0 121.3
C2 C3 C4 121.2 121.0
C3 C2 H2 119.8 119.5
C2 C3 H3 119.4 119.5
C3 C4 C5 121.6 119.7
C4 C3 H3 119.4 119.5
C3 C4 H4 119.2 120.2
C4 C5 C6 118.0 119.4
C4 C5 C10 121.0 121.3
C5 C4 H4 119.2 120.1
C6 C5 C10 121.0 119.3
C5 C6 C7 117.7 119.5
C5 C10 C9 118.0 119.4
C6 C7 C8 121.9 120.0
C6 C7 H7 119.0 120.0
C7 C8 C9 119.9 121.1
C8 C7 H7 119.0 120.0
C7 C8 H8 120.0 119.4
C8 C9 C10 121.5 120.8
C9 C8 H8 120.0 119.4
C8 C9 H9 119.2 119.6
C10 C9 H9 119.3 119.6
HB1C CB HB2C 118.3 109.5
H111 C11 H112 109.5 109.5
H111 C11 H113 109.5 109.5
H112 C11 H113 109.5 109.4
H121 C12 H122 109.5 109.5
H121 C12 H123 109.5 109.5
H122 C12 H123 109.5 109.4

Torsion Angles for 9NF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CA N S1 O2 44.3 181.2
CA N S1 O3 171.1 314.2
CA N S1 C1 284.0 67.6
S1 N CA H 240.0 180.2
C CA N CB 123.3 120.0
C CA N HA 243.9 240.0
N CA CB CG 177.8 295.0
CB CA N HA 120.6 120.0
N CA CB HB1C 297.8 55.0
N CA CB HB2C 63.0 175.0
S1 N CA C 238.6 246.5
S1 N CA CB 115.3 126.4
CA N S1 H 120.0 179.8
S1 N CA HA 354.7 6.4
O2 S1 N O3 233.2 227.1
O2 S1 N C1 120.3 113.6
O3 S1 N C1 247.1 246.5
N S1 C1 C2 109.0 243.1
N S1 C1 C6 289.3 62.9
C CA N S1 238.6 246.5
N CA C CB 239.5 239.9
C CA N H 358.7 66.3
N CA C HA 119.2 120.0
C CA CB CG 53.5 175.0
CB CA C HA 239.7 240.0
C CA CB HB1C 173.5 294.9
C CA CB HB2C 298.8 55.0
OXT C CA HA   60.0
O C CA HA   239.9
CB CA N S1 115.3 126.4
N CA CB C 124.3 120.0
CB CA N H 235.3 306.2
N CA CB HA 240.4 240.0
C CA CB HA 116.2 120.0
CA CB CG CD1 287.0 90.0
CA CB CG CD2 107.3 269.7
CG CB CA HB1C 240.0 240.1
CG CB CA HB2C 114.8 120.0
HB1C CB CA HB2C 234.7 239.9
CG CB CA HA 297.4 55.0
CA CB CG HB1C 120.0 119.9
CA CB CG HB2C 245.3 240.0
CD1 CG CB CD2 179.7 180.2
CB CG CD1 CE1 179.9 180.0
CB CG CD1 HD1 359.9 360.0
CB CG CD2 CE2 180.0 180.0
CB CG CD2 HD2 360.0 359.9
HB1C CB CG HB2C 125.3 120.0
CB CG CD1 CD2 180.3 179.8
CD1 CG CB HB1C 167.0 330.0
CD1 CG CB HB2C 41.7 210.0
CD1 CG CD2 CE2 0.3 359.8
CD1 CG CD2 HD2 180.3 179.7
CG CD1 CE1 CZ 0.2 360.0
CE1 CD1 CG HD1 180.0 180.0
CG CD1 CE1 HE1 180.2 180.0
CB CG CD2 CD1 179.7 180.2
CD2 CG CB HB1C 347.3 149.8
CD2 CG CB HB2C 222.1 29.8
CD2 CG CD1 CE1 359.6 0.2
CD2 CG CD1 HD1 179.6 180.2
CG CD2 CE2 CZ 0.0 0.0
CE2 CD2 CG HD2 180.0 180.1
CG CD2 CE2 HE2 180.0 179.9
CE1 CD1 CG CD2 359.6 0.2
CG CD1 CE1 HD1 180.0 180.0
CD1 CE1 CZ CE2 0.1 359.8
CZ CE1 CD1 HE1 180.0 180.0
CD1 CE1 CZ HZ 180.1 180.0
CG CD2 CE2 HD2 180.0 179.9
CE1 CZ CE2 CD2 359.8 0.2
CZ CE2 CD2 HE2 180.0 180.1
CD2 CE2 CZ HZ 179.8 180.0
CZ CE1 CD1 HD1 180.2 180.0
CD1 CE1 CZ HE1 180.0 180.0
CD2 CE2 CZ CE1 359.8 0.2
CE1 CZ CE2 HE2 179.8 180.3
CE2 CZ CE1 HZ 180.0 179.8
CZ CE2 CD2 HD2 180.0 180.1
CD2 CE2 CZ HE2 180.0 179.9
CE2 CZ CE1 HE1 180.1 179.8
CE1 CZ CE2 HZ 180.0 180.2
N S1 O2 O3 120.1 122.9
N S1 O2 C1 244.6 245.9
O2 S1 N H 284.3 1.4
O3 S1 O2 C1 124.5 123.0
O2 S1 C1 C2 351.6 129.6
O2 S1 C1 C6 171.9 309.3
N S1 O3 O2 238.9 237.0
N S1 O3 C1 111.6 114.0
O3 S1 N H 51.1 134.3
O2 S1 O3 C1 232.7 237.0
O3 S1 C1 C2 221.6 356.6
O3 S1 C1 C6 41.8 176.4
N S1 C1 O2 117.4 113.6
N S1 C1 O3 247.4 246.5
C1 S1 N H 164.0 247.8
O2 S1 C1 O3 130.1 132.9
C2 C1 S1 C6 179.8 180.2
S1 C1 C2 C3 180.6 180.0
S1 C1 C2 H2 0.6 0.1
S1 C1 C6 C5 179.0 179.7
S1 C1 C6 C7 359.8 360.0
C11 N1 C10 C12 240.9 236.1
C10 N1 C11 H111 39.1 60.0
C10 N1 C11 H112 159.2 180.0
C10 N1 C11 H113 279.2 299.9
C10 N1 C12 H121 20.6 60.0
C10 N1 C12 H122 140.6 180.0
C10 N1 C12 H123 260.6 300.0
C4 C5 C10 N1 0.1 360.0
C6 C5 C10 N1 180.5 180.3
C5 C10 N1 C9 179.9 179.1
C8 C9 C10 N1 179.5 180.0
N1 C10 C9 H9 359.5 359.4
C10 N1 C11 C12 124.8 123.9
C11 N1 C10 C5 118.0 120.0
C11 N1 C10 C9 298.0 300.9
C11 N1 C12 H121 143.5 183.9
C11 N1 C12 H122 263.5 304.0
C11 N1 C12 H123 23.5 63.9
H111 C11 N1 H112 240.0 240.0
H111 C11 N1 H113 120.0 120.0
H112 C11 N1 H113 240.0 240.1
C10 N1 C12 C11 237.1 236.1
C12 N1 C10 C5 237.1 243.9
C12 N1 C10 C9 57.2 64.8
C12 N1 C11 H111 274.4 296.1
C12 N1 C11 H112 34.4 56.1
C12 N1 C11 H113 154.4 176.0
H121 C12 N1 H122 240.0 240.0
H121 C12 N1 H123 120.0 120.0
H122 C12 N1 H123 240.0 240.0
S1 C1 C2 C6 180.2 179.8
C2 C1 C6 C5 359.3 359.5
C2 C1 C6 C7 180.1 179.8
C1 C2 C3 C4 359.9 0.0
C3 C2 C1 H2 180.0 179.9
C1 C2 C3 H3 179.9 180.0
S1 C1 C6 C2 179.8 180.2
C6 C1 C2 C3 0.4 0.2
C6 C1 C2 H2 180.4 180.3
C4 C5 C6 C1 0.8 0.6
C1 C6 C5 C10 180.4 180.3
C5 C6 C1 C7 179.2 179.7
C1 C6 C7 C8 179.5 180.0
C1 C6 C7 H7 359.5 360.0
C3 C2 C1 C6 0.4 0.2
C1 C2 C3 H2 180.0 180.1
C2 C3 C4 C5 0.1 0.0
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 H4 180.1 179.9
C4 C3 C2 H2 180.0 179.9
C2 C3 C4 H3 180.0 180.0
C3 C4 C5 C6 359.5 359.7
C3 C4 C5 C10 179.9 180.0
C5 C4 C3 H4 180.0 180.1
N1 C10 C5 C4 0.1 360.0
C1 C6 C5 C4 0.8 0.6
C5 C4 C3 H3 180.2 180.0
C3 C4 C5 H4 180.0 179.9
C6 C5 C4 C10 179.6 179.7
C4 C5 C6 C7 180.0 180.3
C4 C5 C10 C9 180.0 179.1
N1 C10 C5 C6 180.5 180.3
C1 C6 C5 C7 180.7 180.3
C4 C5 C6 C10 180.4 180.3
C6 C5 C4 H4 179.5 179.8
C6 C5 C10 C9 0.5 359.4
C5 C6 C7 C8 0.3 0.3
C5 C6 C7 H7 180.3 180.3
C5 C10 N1 C11 118.0 120.0
C5 C10 N1 C12 237.1 243.9
N1 C10 C5 C9 180.1 180.9
C4 C5 C10 C6 179.6 179.7
C10 C5 C4 H4 359.9 0.1
C10 C5 C6 C7 359.6 0.0
C8 C9 C10 C5 359.6 0.9
C5 C10 C9 H9 179.6 180.3
C1 C6 C7 C5 179.2 179.7
C7 C6 C5 C10 359.6 0.0
C6 C7 C8 C9 359.8 360.0
C8 C7 C6 H7 180.0 180.0
C6 C7 C8 H8 179.7 179.9
C6 C7 C8 H7 180.0 180.0
C7 C8 C9 C10 0.3 359.4
C9 C8 C7 H8 180.0 180.1
C7 C8 C9 H9 180.3 180.0
N1 C10 C9 C8 179.5 180.0
C5 C10 C9 C8 359.6 0.9
C9 C8 C7 H7 179.7 180.0
C7 C8 C9 H8 180.0 179.9
C10 C9 C8 H9 180.0 179.4
C9 C10 N1 C11 298.0 300.9
C9 C10 N1 C12 57.2 64.8
N1 C10 C9 C5 179.9 179.1
C10 C9 C8 H8 180.3 179.5
C8 C9 C10 H9 180.0 180.6
CA N H S1 226.3 180.2
H N CA C 358.7 66.3
H N CA CB 235.3 306.2
H N CA HA 114.7 186.2
H N S1 O2 284.3 1.4
H N S1 O3 51.1 134.3
H N S1 C1 164.0 247.8
HA CA N S1 354.7 6.4
N CA HA C 238.4 240.0
N CA HA CB 117.7 120.0
HA CA N H 114.7 186.2
C CA HA CB 239.4 240.0
HA CA CB CG 297.4 55.0
HA CA CB HB1C 57.3 175.0
HA CA CB HB2C 182.6 295.0
CA CB HB1C CG 231.1 240.1
HB1C CB CA HA 57.3 175.0
CA CB HB1C HB2C 115.5 120.1
HB1C CB CG CD1 167.0 330.0
HB1C CB CG CD2 347.3 149.8
CG CB HB1C HB2C 244.4 240.0
CA CB HB2C CG 126.2 120.0
HB2C CB CA HA 182.6 295.0
CA CB HB2C HB1C 243.1 240.0
HB2C CB CG CD1 41.7 210.0
HB2C CB CG CD2 222.1 29.8
CG CB HB2C HB1C 116.9 120.0
HD1 CD1 CG CD2 179.6 180.2
CG CD1 HD1 CE1 180.0 180.0
HD1 CD1 CE1 CZ 180.2 180.0
HD1 CD1 CE1 HE1 0.2 360.0
CG CD2 HD2 CE2 180.0 180.1
HD2 CD2 CE2 CZ 180.0 180.1
HD2 CD2 CE2 HE2 0.0 0.0
CD1 CE1 HE1 CZ 180.0 180.0
HE1 CE1 CD1 HD1 0.2 360.0
HE1 CE1 CZ CE2 180.1 179.8
HE1 CE1 CZ HZ 0.1 360.0
CD2 CE2 HE2 CZ 180.0 180.1
HE2 CE2 CD2 HD2 0.0 0.0
HE2 CE2 CZ HZ 359.8 0.1
CE1 CZ HZ CE2 180.0 179.8
HZ CZ CE1 HE1 0.1 360.0
HZ CZ CE2 HE2 359.8 0.1
H111 C11 N1 C12 274.4 296.1
N1 C11 H111 H112 120.0 120.0
N1 C11 H111 H113 240.0 240.0
H112 C11 H111 H113 120.0 120.0
H112 C11 N1 C12 34.4 56.1
N1 C11 H112 H111 240.0 239.9
N1 C11 H112 H113 120.0 119.9
H111 C11 H112 H113 240.0 240.0
H113 C11 N1 C12 154.4 176.0
N1 C11 H113 H111 120.0 120.0
N1 C11 H113 H112 240.0 240.0
H111 C11 H113 H112 120.0 120.0
N1 C12 H121 H122 120.0 120.0
N1 C12 H121 H123 240.0 240.0
H122 C12 H121 H123 120.0 120.0
N1 C12 H122 H121 240.0 240.0
N1 C12 H122 H123 120.0 120.0
H121 C12 H122 H123 240.0 239.9
N1 C12 H123 H121 120.0 120.0
N1 C12 H123 H122 240.0 240.0
H121 C12 H123 H122 120.0 120.1
H2 C2 C1 C6 180.4 180.3
C1 C2 H2 C3 180.0 179.9
H2 C2 C3 C4 180.0 179.9
H2 C2 C3 H3 359.9 359.9
C2 C3 H3 C4 180.0 180.0
H3 C3 C2 H2 359.9 359.9
H3 C3 C4 C5 180.2 180.0
H3 C3 C4 H4 0.2 359.9
C3 C4 H4 C5 180.0 180.1
H4 C4 C3 H3 0.2 359.9
H4 C4 C5 C6 179.5 179.8
H4 C4 C5 C10 359.9 0.1
C6 C7 H7 C8 180.0 180.0
H7 C7 C8 C9 179.7 180.0
H7 C7 C8 H8 359.7 359.9
C7 C8 H8 C9 180.0 180.1
H8 C8 C7 H7 359.7 359.9
H8 C8 C9 C10 180.3 179.5
H8 C8 C9 H9 0.3 0.1
C8 C9 H9 C10 180.0 179.4
H9 C9 C8 H8 0.3 0.1