PDB Chemical Component 9ND
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9ND
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C34 |
C32 |
1.383 |
1.383 |
C34 |
C31 |
1.383 |
1.383 |
C32 |
C28 |
1.390 |
1.381 |
C31 |
C27 |
1.386 |
1.381 |
C23 |
C16 |
1.382 |
1.379 |
C23 |
C21 |
1.375 |
1.385 |
C28 |
C20 |
1.390 |
1.388 |
C16 |
C12 |
1.394 |
1.396 |
C27 |
C20 |
1.395 |
1.389 |
CL24 |
C21 |
1.736 |
1.736 |
C20 |
N10 |
1.397 |
1.400 |
N3 |
C5 |
1.398 |
1.356 |
N3 |
C2 |
1.325 |
1.309 |
C21 |
C22 |
1.382 |
1.385 |
C9 |
C5 |
1.399 |
1.399 |
C9 |
C13 |
1.386 |
1.378 |
C12 |
C2 |
1.474 |
1.479 |
C12 |
C17 |
1.395 |
1.395 |
C5 |
C4 |
1.395 |
1.407 |
F19 |
C13 |
1.346 |
1.350 |
C2 |
N1 |
1.373 |
1.369 |
N10 |
C6 |
1.345 |
1.348 |
C13 |
C11 |
1.379 |
1.392 |
C22 |
C17 |
1.387 |
1.380 |
C4 |
N1 |
1.396 |
1.382 |
C4 |
C8 |
1.377 |
1.387 |
N1 |
C7 |
1.489 |
1.466 |
C11 |
C8 |
1.368 |
1.380 |
C11 |
F18 |
1.349 |
1.351 |
C6 |
C7 |
1.540 |
1.506 |
C6 |
O14 |
1.227 |
1.213 |
C7 |
C15 |
1.542 |
1.530 |
C15 |
C26 |
1.539 |
1.531 |
C15 |
C25 |
1.535 |
1.530 |
C26 |
C30 |
1.539 |
1.530 |
C25 |
C29 |
1.532 |
1.530 |
C30 |
C33 |
1.546 |
1.529 |
C29 |
C33 |
1.533 |
1.531 |
C7 |
H1 |
1.100 |
1.091 |
C8 |
H2 |
1.079 |
1.081 |
C15 |
H3 |
1.100 |
1.090 |
C17 |
H4 |
1.080 |
1.079 |
C22 |
H5 |
1.080 |
1.081 |
C26 |
H6 |
1.100 |
1.090 |
C26 |
H7 |
1.100 |
1.090 |
C28 |
H8 |
1.080 |
1.079 |
C9 |
H9 |
1.080 |
1.080 |
C16 |
H10 |
1.080 |
1.079 |
C23 |
H11 |
1.080 |
1.080 |
C25 |
H12 |
1.100 |
1.091 |
C25 |
H13 |
1.100 |
1.090 |
C29 |
H14 |
1.100 |
1.090 |
C29 |
H15 |
1.100 |
1.090 |
C33 |
H16 |
1.100 |
1.091 |
C33 |
H17 |
1.100 |
1.090 |
C30 |
H18 |
1.100 |
1.090 |
C30 |
H19 |
1.100 |
1.090 |
N10 |
H20 |
1.000 |
0.970 |
C27 |
H21 |
1.080 |
1.081 |
C31 |
H22 |
1.080 |
1.080 |
C34 |
H23 |
1.080 |
1.081 |
C32 |
H24 |
1.080 |
1.080 |
Bond Angles for 9ND
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C32 |
C34 |
H23 |
120.0 |
119.9 |
C34 |
C32 |
H24 |
119.9 |
119.9 |
C34 |
C31 |
H22 |
119.8 |
120.0 |
C32 |
C28 |
H8 |
120.1 |
120.1 |
C31 |
C27 |
H21 |
120.1 |
120.0 |
C23 |
C16 |
H10 |
119.6 |
120.1 |
C28 |
C20 |
N10 |
120.8 |
120.1 |
C20 |
N10 |
H20 |
115.6 |
120.0 |
C5 |
N3 |
C2 |
105.0 |
109.7 |
N3 |
C5 |
C4 |
110.1 |
107.1 |
C21 |
C22 |
H5 |
120.4 |
119.9 |
C9 |
C13 |
C11 |
122.1 |
120.5 |
C12 |
C17 |
H4 |
119.7 |
120.1 |
C5 |
C4 |
C8 |
123.2 |
120.0 |
F19 |
C13 |
C11 |
118.6 |
119.8 |
C13 |
C11 |
F18 |
119.4 |
119.8 |
C22 |
C17 |
H4 |
119.7 |
120.1 |
C4 |
N1 |
C7 |
128.6 |
126.4 |
C4 |
C8 |
H2 |
121.8 |
120.0 |
N1 |
C7 |
C6 |
109.6 |
109.5 |
N1 |
C7 |
C15 |
113.2 |
109.5 |
N1 |
C7 |
H1 |
106.4 |
109.4 |
C11 |
C8 |
H2 |
121.7 |
120.1 |
C7 |
C6 |
O14 |
122.2 |
120.0 |
C6 |
C7 |
C15 |
115.4 |
109.5 |
C6 |
C7 |
H1 |
105.8 |
109.5 |
C7 |
C15 |
C26 |
111.2 |
109.5 |
C7 |
C15 |
C25 |
111.7 |
109.5 |
C15 |
C7 |
H1 |
105.8 |
109.4 |
C7 |
C15 |
H3 |
108.2 |
109.4 |
C26 |
C15 |
C25 |
109.1 |
109.5 |
C15 |
C26 |
C30 |
112.0 |
109.4 |
C26 |
C15 |
H3 |
108.3 |
109.5 |
C15 |
C26 |
H6 |
108.8 |
109.5 |
C15 |
C26 |
H7 |
108.9 |
109.5 |
C15 |
C25 |
C29 |
111.9 |
109.5 |
C25 |
C15 |
H3 |
108.3 |
109.5 |
C15 |
C25 |
H12 |
108.9 |
109.5 |
C15 |
C25 |
H13 |
108.8 |
109.4 |
C26 |
C30 |
C33 |
111.0 |
109.5 |
C30 |
C26 |
H6 |
108.9 |
109.5 |
C30 |
C26 |
H7 |
108.8 |
109.5 |
C26 |
C30 |
H18 |
109.1 |
109.5 |
C26 |
C30 |
H19 |
109.1 |
109.5 |
C25 |
C29 |
C33 |
111.3 |
109.4 |
C29 |
C25 |
H12 |
108.8 |
109.5 |
C29 |
C25 |
H13 |
108.9 |
109.5 |
C25 |
C29 |
H14 |
109.0 |
109.5 |
C25 |
C29 |
H15 |
109.0 |
109.5 |
C30 |
C33 |
H16 |
109.1 |
109.5 |
C30 |
C33 |
H17 |
109.0 |
109.5 |
C33 |
C29 |
H14 |
109.0 |
109.5 |
C33 |
C29 |
H15 |
109.0 |
109.5 |
C29 |
C33 |
H16 |
109.1 |
109.5 |
C29 |
C33 |
H17 |
109.1 |
109.5 |
H6 |
C26 |
H7 |
109.4 |
109.5 |
H12 |
C25 |
H13 |
109.5 |
109.5 |
H14 |
C29 |
H15 |
109.5 |
109.5 |
H16 |
C33 |
H17 |
109.5 |
109.5 |
H18 |
C30 |
H19 |
109.5 |
109.4 |
Torsion Angles for 9ND
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C32 |
C34 |
C31 |
H22 |
180.2 |
179.7 |
C34 |
C32 |
C28 |
H8 |
180.0 |
180.0 |
C34 |
C31 |
C27 |
H21 |
179.8 |
180.0 |
C23 |
C21 |
C22 |
H5 |
179.9 |
179.9 |
C28 |
C20 |
N10 |
H20 |
263.7 |
32.9 |
C16 |
C12 |
C17 |
H4 |
180.7 |
180.0 |
C27 |
C20 |
N10 |
H20 |
83.4 |
213.1 |
CL24 |
C21 |
C22 |
H5 |
0.0 |
0.0 |
N3 |
C5 |
C4 |
C8 |
179.8 |
180.0 |
C2 |
N3 |
C5 |
C4 |
359.4 |
0.3 |
C21 |
C22 |
C17 |
H4 |
179.6 |
180.0 |
C9 |
C5 |
N3 |
C2 |
179.8 |
180.0 |
F19 |
C13 |
C9 |
C11 |
180.2 |
180.1 |
C9 |
C13 |
C11 |
F18 |
180.2 |
180.0 |
C2 |
C12 |
C17 |
H4 |
359.1 |
0.1 |
C22 |
C17 |
C12 |
H4 |
180.0 |
179.7 |
C4 |
C5 |
N3 |
C2 |
359.4 |
0.3 |
C5 |
C4 |
N1 |
C7 |
179.9 |
180.1 |
C5 |
C4 |
C8 |
H2 |
180.5 |
179.9 |
C9 |
C13 |
F19 |
C11 |
179.8 |
179.9 |
F19 |
C13 |
C11 |
F18 |
360.0 |
359.9 |
C2 |
N1 |
C7 |
H1 |
359.5 |
54.5 |
N10 |
C6 |
C7 |
H1 |
293.7 |
51.0 |
C13 |
C11 |
C8 |
H2 |
179.6 |
179.9 |
C12 |
C17 |
C22 |
H4 |
180.0 |
180.3 |
C4 |
N1 |
C7 |
C6 |
65.5 |
114.2 |
C4 |
N1 |
C7 |
C15 |
295.1 |
354.1 |
C4 |
N1 |
C7 |
H1 |
179.4 |
234.2 |
C8 |
C4 |
N1 |
C7 |
0.7 |
360.0 |
C11 |
C8 |
C4 |
H2 |
180.0 |
180.0 |
N1 |
C7 |
C6 |
O14 |
228.2 |
351.0 |
C6 |
C7 |
N1 |
C15 |
130.3 |
120.0 |
C6 |
C7 |
N1 |
H1 |
246.1 |
240.0 |
N1 |
C7 |
C15 |
C26 |
314.6 |
294.9 |
N1 |
C7 |
C15 |
C25 |
192.5 |
174.9 |
C15 |
C7 |
N1 |
H1 |
115.7 |
119.9 |
N1 |
C7 |
C15 |
H3 |
73.4 |
54.9 |
C4 |
C8 |
C11 |
H2 |
180.0 |
180.0 |
F18 |
C11 |
C8 |
H2 |
359.8 |
360.0 |
N1 |
C7 |
C6 |
C15 |
230.8 |
240.0 |
N1 |
C7 |
C6 |
H1 |
114.3 |
120.0 |
C6 |
C7 |
C15 |
C26 |
187.2 |
174.9 |
C6 |
C7 |
C15 |
C25 |
65.1 |
54.9 |
C15 |
C7 |
C6 |
H1 |
243.5 |
240.0 |
C6 |
C7 |
C15 |
H3 |
306.0 |
294.9 |
O14 |
C6 |
C7 |
C15 |
357.3 |
111.1 |
O14 |
C6 |
C7 |
H1 |
113.9 |
231.1 |
N1 |
C7 |
C15 |
C6 |
127.4 |
120.0 |
N1 |
C7 |
C15 |
H1 |
243.9 |
240.1 |
C15 |
C7 |
C6 |
O14 |
357.3 |
111.1 |
C6 |
C7 |
C15 |
H1 |
116.5 |
120.0 |
C26 |
C15 |
C7 |
C25 |
122.1 |
120.0 |
C7 |
C15 |
C26 |
C30 |
179.5 |
180.0 |
C26 |
C15 |
C7 |
H3 |
241.2 |
240.0 |
C7 |
C15 |
C26 |
H6 |
299.9 |
300.0 |
C7 |
C15 |
C26 |
H7 |
59.1 |
60.0 |
C7 |
C15 |
C25 |
C29 |
180.5 |
180.0 |
C25 |
C15 |
C7 |
H3 |
119.1 |
120.0 |
C7 |
C15 |
C25 |
H12 |
300.9 |
300.0 |
C7 |
C15 |
C25 |
H13 |
60.2 |
60.0 |
C7 |
C15 |
C26 |
C25 |
236.4 |
240.0 |
C26 |
C15 |
C7 |
H1 |
70.7 |
54.9 |
C7 |
C15 |
C26 |
H3 |
118.8 |
120.0 |
C26 |
C15 |
C25 |
C29 |
57.3 |
60.0 |
C25 |
C15 |
C26 |
H3 |
242.4 |
240.0 |
C26 |
C15 |
C25 |
H12 |
177.6 |
180.0 |
C26 |
C15 |
C25 |
H13 |
296.9 |
300.0 |
C15 |
C26 |
C30 |
C33 |
55.9 |
60.0 |
C30 |
C26 |
C15 |
H6 |
239.6 |
240.0 |
C30 |
C26 |
C15 |
H7 |
120.4 |
120.0 |
C15 |
C26 |
C30 |
H18 |
176.1 |
180.0 |
C15 |
C26 |
C30 |
H19 |
295.7 |
300.0 |
H6 |
C26 |
C15 |
H7 |
240.8 |
240.0 |
C7 |
C15 |
C25 |
C26 |
123.3 |
120.0 |
C25 |
C15 |
C7 |
H1 |
308.6 |
294.9 |
C7 |
C15 |
C25 |
H3 |
240.9 |
240.0 |
C25 |
C15 |
C26 |
C30 |
303.1 |
300.0 |
C26 |
C15 |
C25 |
H3 |
117.6 |
120.0 |
C25 |
C15 |
C26 |
H6 |
63.5 |
60.0 |
C25 |
C15 |
C26 |
H7 |
182.7 |
180.0 |
C15 |
C25 |
C29 |
C33 |
303.0 |
300.0 |
C29 |
C25 |
C15 |
H12 |
239.6 |
240.0 |
C29 |
C25 |
C15 |
H13 |
120.4 |
120.0 |
C15 |
C25 |
C29 |
H14 |
63.3 |
60.0 |
C15 |
C25 |
C29 |
H15 |
182.8 |
180.0 |
H12 |
C25 |
C15 |
H13 |
240.7 |
240.0 |
C30 |
C26 |
C15 |
C25 |
303.1 |
300.0 |
C30 |
C26 |
C15 |
H3 |
60.7 |
60.0 |
C15 |
C26 |
C30 |
H6 |
120.4 |
120.0 |
C15 |
C26 |
C30 |
H7 |
239.6 |
240.0 |
C26 |
C30 |
C33 |
H16 |
66.4 |
180.0 |
C26 |
C30 |
C33 |
H17 |
186.0 |
60.0 |
H6 |
C26 |
C30 |
H7 |
119.2 |
120.0 |
H18 |
C30 |
C26 |
H19 |
240.4 |
240.1 |
C29 |
C25 |
C15 |
H3 |
299.6 |
300.0 |
C15 |
C25 |
C29 |
H12 |
120.4 |
120.0 |
C15 |
C25 |
C29 |
H13 |
239.6 |
240.0 |
C33 |
C29 |
C25 |
H14 |
239.7 |
240.0 |
C33 |
C29 |
C25 |
H15 |
120.3 |
120.0 |
C25 |
C29 |
C33 |
H16 |
294.1 |
180.0 |
C25 |
C29 |
C33 |
H17 |
174.6 |
300.0 |
H12 |
C25 |
C29 |
H13 |
119.3 |
120.0 |
H14 |
C29 |
C25 |
H15 |
240.6 |
240.0 |
C33 |
C30 |
C26 |
H6 |
295.5 |
300.0 |
C33 |
C30 |
C26 |
H7 |
176.3 |
180.0 |
C26 |
C30 |
C33 |
H18 |
120.2 |
120.0 |
C26 |
C30 |
C33 |
H19 |
239.8 |
240.0 |
C30 |
C33 |
C29 |
H14 |
294.1 |
300.0 |
C30 |
C33 |
C29 |
H15 |
174.6 |
180.0 |
C29 |
C33 |
C30 |
H16 |
239.8 |
120.0 |
C29 |
C33 |
C30 |
H17 |
120.2 |
240.0 |
H16 |
C33 |
C30 |
H17 |
240.5 |
120.0 |
C26 |
C30 |
C33 |
C29 |
306.2 |
300.0 |
C33 |
C29 |
C25 |
H12 |
182.7 |
180.0 |
C33 |
C29 |
C25 |
H13 |
63.4 |
60.0 |
C25 |
C29 |
C33 |
H14 |
120.3 |
120.0 |
C25 |
C29 |
C33 |
H15 |
239.7 |
240.0 |
C30 |
C33 |
C29 |
H16 |
120.3 |
240.0 |
C30 |
C33 |
C29 |
H17 |
239.8 |
120.0 |
H14 |
C29 |
C33 |
H15 |
119.4 |
120.0 |
H16 |
C33 |
C29 |
H17 |
119.5 |
240.0 |
N1 |
C7 |
H1 |
C6 |
243.5 |
240.0 |
N1 |
C7 |
H1 |
C15 |
120.6 |
119.9 |
H1 |
C7 |
C6 |
O14 |
113.9 |
231.1 |
C6 |
C7 |
H1 |
C15 |
237.1 |
240.0 |
H1 |
C7 |
C15 |
C26 |
70.7 |
54.9 |
H1 |
C7 |
C15 |
C25 |
308.6 |
294.9 |
H1 |
C7 |
C15 |
H3 |
189.5 |
174.9 |
C7 |
C15 |
H3 |
C26 |
239.4 |
240.0 |
C7 |
C15 |
H3 |
C25 |
121.3 |
120.0 |
H3 |
C15 |
C7 |
H1 |
189.5 |
174.9 |
C26 |
C15 |
H3 |
C25 |
241.9 |
240.0 |
H3 |
C15 |
C26 |
C30 |
60.7 |
60.0 |
H3 |
C15 |
C26 |
H6 |
181.1 |
180.0 |
H3 |
C15 |
C26 |
H7 |
300.4 |
300.0 |
H3 |
C15 |
C25 |
C29 |
299.6 |
300.0 |
H3 |
C15 |
C25 |
H12 |
60.0 |
60.0 |
H3 |
C15 |
C25 |
H13 |
179.3 |
180.0 |
H5 |
C22 |
C17 |
H4 |
359.6 |
360.0 |
H6 |
C26 |
C15 |
C25 |
63.5 |
60.0 |
C15 |
C26 |
H6 |
C30 |
237.7 |
240.0 |
H6 |
C26 |
C15 |
H3 |
181.1 |
180.0 |
C15 |
C26 |
H6 |
H7 |
118.9 |
120.0 |
H6 |
C26 |
C30 |
C33 |
295.5 |
300.0 |
C30 |
C26 |
H6 |
H7 |
241.1 |
240.0 |
H6 |
C26 |
C30 |
H18 |
55.8 |
60.1 |
H6 |
C26 |
C30 |
H19 |
175.3 |
180.0 |
H7 |
C26 |
C15 |
C25 |
182.7 |
180.0 |
C15 |
C26 |
H7 |
C30 |
122.3 |
120.0 |
H7 |
C26 |
C15 |
H3 |
300.4 |
300.0 |
C15 |
C26 |
H7 |
H6 |
241.2 |
240.0 |
H7 |
C26 |
C30 |
C33 |
176.3 |
180.0 |
C30 |
C26 |
H7 |
H6 |
118.9 |
120.0 |
H7 |
C26 |
C30 |
H18 |
296.5 |
300.0 |
H7 |
C26 |
C30 |
H19 |
56.1 |
60.0 |
H8 |
C28 |
C20 |
N10 |
359.8 |
359.9 |
H9 |
C9 |
C13 |
C11 |
179.6 |
180.0 |
H11 |
C23 |
C16 |
H10 |
0.3 |
0.1 |
C15 |
C25 |
H12 |
C29 |
237.8 |
240.0 |
H12 |
C25 |
C15 |
H3 |
60.0 |
60.0 |
C15 |
C25 |
H12 |
H13 |
118.9 |
119.9 |
H12 |
C25 |
C29 |
C33 |
182.7 |
180.0 |
C29 |
C25 |
H12 |
H13 |
241.1 |
239.9 |
H12 |
C25 |
C29 |
H14 |
303.0 |
300.0 |
H12 |
C25 |
C29 |
H15 |
62.4 |
60.0 |
C15 |
C25 |
H13 |
C29 |
122.2 |
120.0 |
H13 |
C25 |
C15 |
H3 |
179.3 |
180.0 |
C15 |
C25 |
H13 |
H12 |
241.1 |
240.0 |
H13 |
C25 |
C29 |
C33 |
63.4 |
60.0 |
C29 |
C25 |
H13 |
H12 |
118.9 |
120.0 |
H13 |
C25 |
C29 |
H14 |
183.7 |
180.0 |
H13 |
C25 |
C29 |
H15 |
303.1 |
300.0 |
C25 |
C29 |
H14 |
C33 |
238.3 |
240.0 |
H14 |
C29 |
C25 |
H12 |
303.0 |
300.0 |
H14 |
C29 |
C25 |
H13 |
183.7 |
180.0 |
C25 |
C29 |
H14 |
H15 |
119.2 |
120.0 |
C33 |
C29 |
H14 |
H15 |
240.9 |
240.0 |
H14 |
C29 |
C33 |
H16 |
173.8 |
60.0 |
H14 |
C29 |
C33 |
H17 |
54.3 |
180.0 |
C25 |
C29 |
H15 |
C33 |
121.7 |
120.0 |
H15 |
C29 |
C25 |
H12 |
62.4 |
60.0 |
H15 |
C29 |
C25 |
H13 |
303.1 |
300.0 |
C25 |
C29 |
H15 |
H14 |
240.9 |
240.0 |
C33 |
C29 |
H15 |
H14 |
119.2 |
120.0 |
H15 |
C29 |
C33 |
H16 |
54.4 |
300.0 |
H15 |
C29 |
C33 |
H17 |
294.8 |
60.0 |
C30 |
C33 |
H16 |
H17 |
119.3 |
240.0 |
H16 |
C33 |
C29 |
H14 |
173.8 |
60.0 |
H16 |
C33 |
C29 |
H15 |
54.4 |
300.0 |
C29 |
C33 |
H16 |
H17 |
240.7 |
120.0 |
C30 |
C33 |
H17 |
H16 |
240.7 |
120.0 |
H17 |
C33 |
C29 |
H14 |
54.3 |
180.0 |
H17 |
C33 |
C29 |
H15 |
294.8 |
60.0 |
C29 |
C33 |
H17 |
H16 |
119.3 |
240.0 |
C26 |
C30 |
H18 |
C33 |
238.6 |
240.0 |
H18 |
C30 |
C26 |
H6 |
55.8 |
60.1 |
H18 |
C30 |
C26 |
H7 |
296.5 |
300.0 |
C26 |
C30 |
H18 |
H19 |
119.3 |
120.0 |
H18 |
C30 |
C33 |
H16 |
306.2 |
60.0 |
H18 |
C30 |
C33 |
H17 |
65.8 |
300.0 |
C26 |
C30 |
H19 |
C33 |
121.4 |
120.0 |
H19 |
C30 |
C26 |
H6 |
175.3 |
180.0 |
H19 |
C30 |
C26 |
H7 |
56.1 |
60.0 |
C26 |
C30 |
H19 |
H18 |
240.7 |
240.0 |
H19 |
C30 |
C33 |
H16 |
186.7 |
300.0 |
H19 |
C30 |
C33 |
H17 |
306.2 |
180.0 |
H22 |
C31 |
C27 |
H21 |
359.8 |
0.0 |
H23 |
C34 |
C32 |
H24 |
359.9 |
359.7 |
H23 |
C34 |
C31 |
H22 |
0.2 |
360.0 |
H24 |
C32 |
C34 |
H23 |
359.9 |
359.7 |
H24 |
C32 |
C28 |
H8 |
360.0 |
0.3 |