Atom Nomenclature for 9MU

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9MU

Atom Name (V3) Atom Name (V2)
N12 N12
C15 C15
C17 C17
O20 O20
C16 C16
C18 C18
C21 C21
C22 C22
C24 C24
C25 C25
C27 C27
S11 S11
O14 O14
O13 O13
C3 C3
C7 C7
C9 C9
C5 C5
C6 C6
C10 C10
C8 C8
C4 C4
C1 C1
C2 C2
N19 N19
C23 C23
C26 C26
C28 C28
C29 C29
N30 N30
C31 C31
C32 C32
C33 C33
N34 N34
N35 N35
H12 H12
H15 H15
H161 H161
H162 H162
H21 H21
H22 H22
H24 H24
H25 H25
H27 H27
H3 H3
H9 H9
H5 H5
H6 H6
H10 H10
H8 H8
H4 H4
H19 H19
H231 H231
H232 H232
H26 H26
H281 H281
H282 H282
H291 H291
H292 H292
H311 H311
H312 H312
H321 H321
H322 H322
H341 H341
H342 H342
H35 H35