PDB Chemical Component 9MR

Ideal Model

Chemical Description

Name (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranoside
Synonyms CELLOBIOSE-LIKE ISOFAGOMINE; (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucoside; (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl D-glucoside; (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl glucoside
Formula C12 H23 N O8
Formal charge 0
Molecular weight 309.313 g/mol
Component type D-saccharide
Nonstandard Parent Id BGC

Chemical features

Atom count 44
Chiral atom count 8
Chiral atoms C2 C3 C4 C5 C1 C3A C4A C2A
Observed leaving atoms HO2 HO3 HO4 HO6
Bond count 45
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranoside
Systematic name (OpenEye OEToolkits) (2R,3R,4S,5S,6R)-2-[(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1CNC[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O
SMILES (CACTVS) OC[CH]1CNC[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C1[C@@H]([C@H]([C@@H](CN1)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)CO
InChI descriptor InChI=1S/C12H23NO8/c14-3-5-1-13-2-6(16)11(5)21-12-10(19)9(18)8(17)7(4-15)20-12/h5-19H,1-4H2/t5-,6-,7-,8-,9+,10-,11-,12+/m1/s1
InChIKey descriptor LEOSSOWHBSKZSO-WUYFHPBOSA-N

Status Information

Last modified 2020-07-17
Created 2007-02-26
Release status REL
Processing site RCSB