PDB Chemical Component 9MR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9MR

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	C2	1.419	1.427
O2	HO2	0.950	0.969
C2	C1	1.525	1.529
C2	C3	1.530	1.529
C2	H2	1.100	1.096
C3	C4	1.527	1.528
C3	O3	1.433	1.429
C3	H3	1.100	1.097
O3	HO3	0.950	0.968
C4	C5	1.534	1.530
C4	O4	1.439	1.425
C4	H4	1.100	1.098
O4	HO4	0.950	0.970
C5	C6	1.520	1.526
C5	O5	1.446	1.429
C5	H5	1.100	1.097
C6	O6	1.442	1.416
C6	H61	1.100	1.090
C6	H62	1.100	1.090
O6	HO6	0.950	0.973
O5	C1	1.433	1.426
C1	O1	1.424	1.427
C1	H1	1.100	1.097
O1	C3A	1.431	1.427
C3A	C2A	1.524	1.536
C3A	C4A	1.531	1.531
C3A	H3A	1.099	1.097
C4A	C5M	1.522	1.528
C4A	O4A	1.424	1.427
C4A	H4A	1.100	1.097
O4A	HO4A	0.950	0.969
C5M	N5A	1.478	1.461
C5M	H5M1	1.100	1.098
C5M	H5M2	1.100	1.096
N5A	C1A	1.480	1.463
N5A	HN5A	1.000	1.020
C1A	C2A	1.526	1.535
C1A	H1A1	1.100	1.095
C1A	H1A2	1.100	1.097
C2A	C6A	1.539	1.531
C2A	H2A	1.100	1.099
C6A	O6A	1.435	1.415
C6A	H6A1	1.100	1.088
C6A	H6A2	1.100	1.088
O6A	HO6A	0.950	0.973

Bond Angles for 9MR

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	O2	HO2	109.5	106.5
O2	C2	C1	110.8	109.6
O2	C2	C3	109.6	109.3
O2	C2	H2	108.9	106.4
C3	C2	C1	110.8	111.3
C1	C2	H2	107.7	110.1
C2	C1	O5	108.8	110.5
C2	C1	O1	108.3	107.9
C2	C1	H1	109.6	111.2
C3	C2	H2	109.0	110.1
C2	C3	C4	109.7	111.3
C2	C3	O3	108.8	109.3
C2	C3	H3	110.1	110.6
O3	C3	C4	110.5	109.4
C4	C3	H3	108.4	110.4
C3	C4	C5	110.5	110.8
C3	C4	O4	108.8	109.3
C3	C4	H4	109.4	109.6
O3	C3	H3	109.3	105.8
C3	O3	HO3	109.5	106.4
O4	C4	C5	110.2	109.3
C5	C4	H4	108.1	110.2
C4	C5	C6	110.3	111.7
C4	C5	O5	110.2	109.9
C4	C5	H5	107.5	110.6
O4	C4	H4	109.8	107.6
C4	O4	HO4	109.5	106.6
C6	C5	O5	106.4	107.5
C6	C5	H5	111.2	107.7
C5	C6	O6	110.6	108.5
C5	C6	H61	109.1	110.0
C5	C6	H62	108.8	110.0
O5	C5	H5	111.3	109.3
C5	O5	C1	111.8	112.5
O6	C6	H61	109.1	109.2
O6	C6	H62	108.8	109.3
C6	O6	HO6	109.5	107.1
H61	C6	H62	110.4	109.8
O5	C1	O1	105.9	109.7
O5	C1	H1	111.8	110.1
O1	C1	H1	112.3	107.4
C1	O1	C3A	113.6	111.4
O1	C3A	C2A	111.5	109.1
O1	C3A	C4A	110.9	109.1
O1	C3A	H3A	106.0	106.8
C4A	C3A	C2A	105.7	110.8
C2A	C3A	H3A	111.1	110.8
C3A	C2A	C1A	108.7	110.7
C3A	C2A	C6A	112.3	111.3
C3A	C2A	H2A	108.7	108.8
C4A	C3A	H3A	111.8	110.2
C3A	C4A	C5M	110.2	111.4
C3A	C4A	O4A	110.3	108.4
C3A	C4A	H4A	108.3	110.3
O4A	C4A	C5M	109.0	109.0
C5M	C4A	H4A	109.6	110.6
C4A	C5M	N5A	110.5	111.6
C4A	C5M	H5M1	109.1	110.6
C4A	C5M	H5M2	108.9	109.4
O4A	C4A	H4A	109.5	106.9
C4A	O4A	HO4A	109.5	106.4
N5A	C5M	H5M1	109.2	110.3
N5A	C5M	H5M2	108.9	109.4
C5M	N5A	C1A	112.5	111.3
C5M	N5A	HN5A	108.5	108.9
H5M1	C5M	H5M2	110.3	105.3
C1A	N5A	HN5A	108.5	109.0
N5A	C1A	C2A	110.1	111.4
N5A	C1A	H1A1	109.3	108.6
N5A	C1A	H1A2	109.1	109.8
C2A	C1A	H1A1	109.3	109.7
C2A	C1A	H1A2	109.1	110.7
C1A	C2A	C6A	111.3	110.4
C1A	C2A	H2A	109.7	109.1
H1A1	C1A	H1A2	109.9	106.5
C6A	C2A	H2A	105.9	106.4
C2A	C6A	O6A	111.8	108.4
C2A	C6A	H6A1	108.7	109.7
C2A	C6A	H6A2	108.2	109.7
O6A	C6A	H6A1	108.7	109.5
O6A	C6A	H6A2	108.2	109.5
C6A	O6A	HO6A	109.5	107.2
H6A1	C6A	H6A2	111.3	110.0

Torsion Angles for 9MR

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	O2	C1	122.6	122.2
C1	C2	O2	H2	118.3	119.0
O2	C2	C1	O5	180.8	174.9
O2	C2	C1	O1	295.4	294.8
O2	C2	C1	H1	58.3	52.3
C3	C2	O2	H2	240.8	241.2
O2	C2	C3	C4	183.7	190.3
O2	C2	C3	O3	62.7	69.4
O2	C2	C3	H3	302.9	313.3
HO2	O2	C2	C1	130.6	348.0
HO2	O2	C2	C3	253.2	110.1
HO2	O2	C2	H2	12.3	229.0
C1	C2	O2	HO2	130.6	348.0
O2	C2	C1	C3	121.8	121.0
O2	C2	C1	H2	240.9	243.3
C3	C2	C1	H2	119.1	122.3
C1	C2	C3	C4	306.3	311.4
C1	C2	C3	O3	185.3	190.5
C1	C2	C3	H3	65.5	74.5
C5	O5	C1	C2	296.2	297.8
O5	C1	C2	O1	245.3	240.0
O5	C1	C2	H1	122.5	122.6
O1	C1	C2	H1	237.2	242.5
C2	C1	O1	C3A	171.4	179.8
C3	C2	O2	HO2	253.2	110.1
O2	C2	C3	C1	237.4	238.8
O2	C2	C3	H2	119.1	116.5
C1	C2	C3	H2	241.7	237.7
C3	C2	C1	O5	58.9	53.9
C3	C2	C1	O1	173.6	173.9
C3	C2	C1	H1	296.4	291.3
O3	C3	C2	C4	239.0	239.1
C4	C3	C2	H3	240.8	237.0
C2	C3	C4	C5	51.6	49.6
C2	C3	C4	O4	172.7	170.1
C2	C3	C4	H4	292.7	287.7
O3	C3	C2	H3	119.7	116.1
C2	C3	O3	HO3	196.6	169.6
H2	C2	O2	HO2	12.3	229.0
O2	C2	H2	C1	120.2	118.7
O2	C2	H2	C3	240.5	241.7
C3	C2	H2	C1	239.7	237.0
H2	C2	C1	O5	299.8	291.6
H2	C2	C1	O1	54.5	51.6
H2	C2	C1	H1	177.3	169.0
H2	C2	C3	C4	64.6	73.8
H2	C2	C3	O3	303.6	312.9
H2	C2	C3	H3	183.8	196.8
C4	C3	C2	C1	306.3	311.4
C4	C3	C2	H2	64.6	73.8
C2	C3	C4	O3	240.0	239.2
C2	C3	C4	H3	120.2	123.2
O3	C3	C4	H3	240.2	244.0
C4	C3	O3	HO3	76.0	47.5
O4	C4	C3	C5	121.1	120.5
C5	C4	C3	H4	118.9	121.9
C3	C4	C5	C6	187.2	184.8
C3	C4	C5	O5	304.4	304.1
C3	C4	C5	H5	65.8	64.9
O4	C4	C3	H4	240.0	242.4
C3	C4	O4	HO4	273.3	237.8
O3	C3	C2	C1	185.3	190.5
O3	C3	C2	H2	303.6	312.9
C2	C3	O3	C4	120.6	122.0
C2	C3	O3	H3	239.8	240.9
C4	C3	O3	H3	119.2	118.9
O3	C3	C4	C5	171.7	170.4
O3	C3	C4	O4	292.7	290.9
O3	C3	C4	H4	52.7	48.6
H3	C3	C2	C1	65.5	74.5
H3	C3	C2	H2	183.8	196.8
C2	C3	H3	C4	240.0	236.4
C2	C3	H3	O3	119.5	118.2
O3	C3	H3	C4	120.5	118.2
H3	C3	C4	C5	291.4	286.4
H3	C3	C4	O4	52.5	46.9
H3	C3	C4	H4	172.5	164.6
H3	C3	O3	HO3	316.8	288.7
HO3	O3	C3	C4	76.0	47.5
HO3	O3	C3	H3	316.8	288.7
C5	C4	C3	H3	291.4	286.4
C3	C4	C5	O4	120.3	120.5
C3	C4	C5	H4	240.3	238.5
O4	C4	C5	H4	120.0	118.0
C5	C4	O4	HO4	34.6	359.2
C6	C5	C4	O5	242.9	240.7
C6	C5	C4	H5	121.4	119.9
C4	C5	C6	O6	59.6	179.5
C4	C5	C6	H61	179.7	60.0
C4	C5	C6	H62	300.1	299.0
O5	C5	C4	H5	238.6	239.2
C4	C5	O5	C1	62.6	63.2
O4	C4	C3	H3	52.5	46.9
C3	C4	O4	C5	238.7	238.6
C3	C4	O4	H4	119.8	118.9
C5	C4	O4	H4	241.0	240.3
O4	C4	C5	C6	67.0	64.3
O4	C4	C5	O5	184.1	183.6
O4	C4	C5	H5	305.5	304.4
H4	C4	C3	H3	172.5	164.6
C3	C4	H4	C5	120.4	122.2
C3	C4	H4	O4	240.6	241.3
O4	C4	H4	C5	239.8	240.9
H4	C4	C5	C6	307.0	306.3
H4	C4	C5	O5	64.1	65.6
H4	C4	C5	H5	185.6	186.4
H4	C4	O4	HO4	153.5	118.9
HO4	O4	C4	C5	34.6	359.2
HO4	O4	C4	H4	153.5	118.9
C6	C5	C4	H4	307.0	306.3
C4	C5	C6	O5	119.5	120.7
C4	C5	C6	H5	240.8	238.4
O5	C5	C6	H5	121.4	117.7
C6	C5	O5	C1	182.1	185.1
O6	C6	C5	H61	240.0	119.5
O6	C6	C5	H62	119.5	240.4
C5	C6	O6	HO6	166.8	271.4
H61	C6	C5	H62	239.5	121.0
C2	C1	O5	C5	296.2	297.8
O5	C5	C4	H4	64.1	65.6
C4	C5	O5	C6	240.5	238.2
C4	C5	O5	H5	119.1	121.6
C6	C5	O5	H5	238.7	243.4
O5	C5	C6	O6	300.2	58.8
O5	C5	C6	H61	60.2	299.3
O5	C5	C6	H62	180.7	178.3
C5	O5	C1	O1	180.0	178.9
C5	O5	C1	H1	57.4	61.0
H5	C5	C4	H4	185.6	186.4
C4	C5	H5	C6	120.8	122.3
C4	C5	H5	O5	239.3	238.8
C6	C5	H5	O5	118.4	116.5
H5	C5	C6	O6	178.8	301.1
H5	C5	C6	H61	298.8	181.6
H5	C5	C6	H62	59.3	60.6
H5	C5	O5	C1	303.5	301.7
O6	C6	C5	O5	300.2	58.8
O6	C6	C5	H5	178.8	301.1
C5	C6	O6	H61	120.0	240.1
C5	C6	O6	H62	240.5	119.9
H61	C6	O6	H62	120.5	239.9
H61	C6	C5	O5	60.2	299.3
H61	C6	C5	H5	298.8	181.6
C5	C6	H61	O6	239.0	119.0
C5	C6	H61	H62	119.5	238.9
O6	C6	H61	H62	240.5	119.9
H61	C6	O6	HO6	46.8	31.3
H62	C6	C5	O5	180.7	178.3
H62	C6	C5	H5	59.3	60.6
C5	C6	H62	O6	120.6	240.9
C5	C6	H62	H61	240.3	121.1
O6	C6	H62	H61	119.7	240.2
H62	C6	O6	HO6	286.3	151.5
HO6	O6	C6	H61	46.8	31.3
HO6	O6	C6	H62	286.3	151.5
O5	C1	C2	H2	299.8	291.6
C2	C1	O5	O1	116.2	118.8
C2	C1	O5	H1	238.8	236.8
C1	O5	C5	H5	303.5	301.7
O1	C1	O5	H1	122.6	118.0
O5	C1	O1	C3A	287.9	300.3
O1	C1	C2	H2	54.5	51.6
C2	C1	O1	O5	243.5	239.5
C2	C1	O1	H1	121.2	119.9
O5	C1	O1	H1	237.7	240.3
C1	O1	C3A	C2A	252.0	240.2
C1	O1	C3A	C4A	134.6	119.2
C1	O1	C3A	H3A	13.1	0.0
H1	C1	C2	H2	177.3	169.0
C2	C1	H1	O5	120.7	122.8
C2	C1	H1	O1	239.6	242.2
O5	C1	H1	O1	118.9	119.4
H1	C1	O1	C3A	50.2	59.9
C3A	O1	C1	H1	50.2	59.9
C4A	C3A	O1	C2A	242.5	238.9
C2A	C3A	O1	H3A	238.9	240.2
O1	C3A	C2A	C1A	175.6	188.6
O1	C3A	C2A	C6A	51.9	65.4
O1	C3A	C2A	H2A	295.0	308.4
C4A	C3A	O1	H3A	121.5	119.1
O1	C3A	C4A	C5M	183.5	171.3
O1	C3A	C4A	O4A	303.8	291.3
O1	C3A	C4A	H4A	63.6	48.0
O1	C3A	C2A	C4A	239.4	239.9
O1	C3A	C2A	H3A	118.0	117.3
C4A	C3A	C2A	H3A	238.6	237.4
C2A	C3A	C4A	C5M	62.5	51.2
C2A	C3A	C4A	O4A	182.9	171.2
C2A	C3A	C4A	H4A	302.6	287.9
N5A	C1A	C2A	C3A	61.6	55.8
C3A	C2A	C1A	H1A1	301.6	176.0
C3A	C2A	C1A	H1A2	181.3	293.3
C1A	C2A	C3A	C6A	123.7	123.2
C1A	C2A	C3A	H2A	240.6	240.1
C6A	C2A	C3A	H2A	116.9	116.9
C3A	C2A	C6A	O6A	66.9	182.9
C3A	C2A	C6A	H6A1	307.0	63.3
C3A	C2A	C6A	H6A2	186.0	302.4
O1	C3A	C4A	C2A	120.9	120.1
O1	C3A	C4A	H3A	242.0	243.0
C2A	C3A	C4A	H3A	121.0	122.9
C4A	C3A	C2A	C1A	296.2	308.6
C4A	C3A	C2A	C6A	172.5	185.4
C4A	C3A	C2A	H2A	55.6	68.5
O4A	C4A	C3A	C5M	120.4	120.0
C5M	C4A	C3A	H4A	119.9	123.3
C3A	C4A	C5M	N5A	302.0	304.9
C3A	C4A	C5M	H5M1	182.0	68.1
C3A	C4A	C5M	H5M2	61.5	183.7
O4A	C4A	C3A	H4A	240.2	243.3
C3A	C4A	O4A	HO4A	274.6	24.7
O1	C3A	H3A	C2A	238.7	241.3
O1	C3A	H3A	C4A	120.9	118.4
C4A	C3A	H3A	C2A	117.8	122.9
H3A	C3A	C2A	C1A	57.6	71.2
H3A	C3A	C2A	C6A	293.9	308.0
H3A	C3A	C2A	H2A	177.0	191.1
H3A	C3A	C4A	C5M	301.5	288.3
H3A	C3A	C4A	O4A	61.9	48.3
H3A	C3A	C4A	H4A	181.6	165.0
C5M	C4A	C3A	C2A	62.5	51.2
C5M	C4A	C3A	H3A	301.5	288.3
C3A	C4A	C5M	O4A	121.1	119.6
C3A	C4A	C5M	H4A	240.9	236.9
O4A	C4A	C5M	H4A	119.8	117.3
C5M	C4A	O4A	HO4A	35.7	146.2
N5A	C5M	C4A	H5M1	120.0	236.8
N5A	C5M	C4A	H5M2	240.4	121.2
C4A	C5M	N5A	C1A	54.3	59.2
C4A	C5M	N5A	HN5A	294.3	299.0
H5M1	C5M	C4A	H5M2	120.4	244.4
O4A	C4A	C3A	C2A	182.9	171.2
O4A	C4A	C3A	H3A	61.9	48.3
C3A	C4A	O4A	C5M	238.9	238.5
C3A	C4A	O4A	H4A	119.1	118.9
C5M	C4A	O4A	H4A	240.1	240.4
O4A	C4A	C5M	N5A	180.9	185.3
O4A	C4A	C5M	H5M1	60.8	308.5
O4A	C4A	C5M	H5M2	300.4	64.1
H4A	C4A	C3A	C2A	302.6	287.9
H4A	C4A	C3A	H3A	181.6	165.0
C3A	C4A	H4A	C5M	120.2	123.7
C3A	C4A	H4A	O4A	239.7	242.3
O4A	C4A	H4A	C5M	240.5	241.4
H4A	C4A	C5M	N5A	61.1	68.0
H4A	C4A	C5M	H5M1	301.0	191.2
H4A	C4A	C5M	H5M2	180.6	306.8
H4A	C4A	O4A	HO4A	155.6	265.8
HO4A	O4A	C4A	C5M	35.7	146.2
HO4A	O4A	C4A	H4A	155.6	265.8
N5A	C5M	C4A	H4A	61.1	68.0
C4A	C5M	N5A	H5M1	240.0	123.4
C4A	C5M	N5A	H5M2	119.6	238.8
H5M1	C5M	N5A	H5M2	239.5	115.4
C1A	N5A	C5M	HN5A	120.0	120.1
C5M	N5A	C1A	C2A	303.7	300.3
C5M	N5A	C1A	H1A1	63.8	179.4
C5M	N5A	C1A	H1A2	184.0	63.3
H5M1	C5M	C4A	H4A	301.0	191.2
C4A	C5M	H5M1	N5A	120.8	236.0
C4A	C5M	H5M1	H5M2	240.4	118.1
N5A	C5M	H5M1	H5M2	119.6	242.1
H5M1	C5M	N5A	C1A	174.3	295.8
H5M1	C5M	N5A	HN5A	54.3	175.7
H5M2	C5M	C4A	H4A	180.6	306.8
C4A	C5M	H5M2	N5A	239.5	122.5
C4A	C5M	H5M2	H5M1	119.7	241.1
N5A	C5M	H5M2	H5M1	240.2	118.6
H5M2	C5M	N5A	C1A	294.8	180.4
H5M2	C5M	N5A	HN5A	174.7	60.3
C3A	C2A	C1A	N5A	61.6	55.8
C1A	N5A	C5M	H5M1	174.3	295.8
C1A	N5A	C5M	H5M2	294.8	180.4
C5M	N5A	C1A	HN5A	240.0	239.9
C2A	C1A	N5A	H1A1	240.0	120.9
C2A	C1A	N5A	H1A2	119.7	237.0
N5A	C1A	C2A	C6A	185.8	179.5
N5A	C1A	C2A	H2A	302.8	296.1
H1A1	C1A	N5A	H1A2	239.7	116.1
HN5A	N5A	C5M	H5M1	54.3	175.7
HN5A	N5A	C5M	H5M2	174.7	60.3
C5M	N5A	HN5A	C1A	122.5	121.6
HN5A	N5A	C1A	C2A	63.7	60.4
HN5A	N5A	C1A	H1A1	183.8	299.5
HN5A	N5A	C1A	H1A2	304.0	183.5
C1A	C2A	C3A	H3A	57.6	71.2
C3A	C2A	C1A	C6A	235.7	236.3
C3A	C2A	C1A	H2A	118.8	119.7
C2A	C1A	N5A	HN5A	63.7	60.4
N5A	C1A	C2A	H1A1	120.0	239.7
N5A	C1A	C2A	H1A2	240.3	122.5
H1A1	C1A	C2A	H1A2	120.3	242.7
C6A	C2A	C1A	H2A	243.0	243.3
C1A	C2A	C6A	O6A	304.8	59.5
C1A	C2A	C6A	H6A1	184.8	300.0
C1A	C2A	C6A	H6A2	63.8	179.0
H1A1	C1A	N5A	HN5A	183.8	299.5
N5A	C1A	H1A1	C2A	239.5	122.0
N5A	C1A	H1A1	H1A2	119.8	241.8
C2A	C1A	H1A1	H1A2	240.2	119.9
H1A1	C1A	C2A	C6A	65.8	299.7
H1A1	C1A	C2A	H2A	182.8	56.4
H1A2	C1A	N5A	HN5A	304.0	183.5
N5A	C1A	H1A2	C2A	120.3	236.6
N5A	C1A	H1A2	H1A1	240.2	117.4
C2A	C1A	H1A2	H1A1	119.9	240.8
H1A2	C1A	C2A	C6A	305.6	57.0
H1A2	C1A	C2A	H2A	62.5	173.6
C6A	C2A	C3A	H3A	293.9	308.0
C3A	C2A	C6A	C1A	122.2	123.4
C3A	C2A	C6A	H2A	241.4	241.7
C6A	C2A	C1A	H1A1	65.8	299.7
C6A	C2A	C1A	H1A2	305.6	57.0
C1A	C2A	C6A	H2A	119.2	118.3
O6A	C6A	C2A	H6A1	120.0	119.5
O6A	C6A	C2A	H6A2	241.0	240.5
C2A	C6A	O6A	HO6A	76.3	123.5
H6A1	C6A	C2A	H6A2	121.0	121.0
H2A	C2A	C3A	H3A	177.0	191.1
C3A	C2A	H2A	C1A	241.2	239.1
C3A	C2A	H2A	C6A	120.9	120.0
H2A	C2A	C1A	H1A1	182.8	56.4
H2A	C2A	C1A	H1A2	62.5	173.6
C1A	C2A	H2A	C6A	239.7	240.9
H2A	C2A	C6A	O6A	185.5	301.2
H2A	C2A	C6A	H6A1	65.5	181.7
H2A	C2A	C6A	H6A2	304.5	60.7
O6A	C6A	C2A	H2A	185.5	301.2
C2A	C6A	O6A	H6A1	240.0	240.4
C2A	C6A	O6A	H6A2	119.0	119.6
H6A1	C6A	O6A	H6A2	239.0	239.3
H6A1	C6A	C2A	H2A	65.5	181.7
C2A	C6A	H6A1	O6A	121.9	118.8
C2A	C6A	H6A1	H6A2	241.0	239.2
O6A	C6A	H6A1	H6A2	119.1	120.4
H6A1	C6A	O6A	HO6A	196.3	243.2
H6A2	C6A	C2A	H2A	304.5	60.7
C2A	C6A	H6A2	O6A	238.7	241.2
C2A	C6A	H6A2	H6A1	119.3	120.8
O6A	C6A	H6A2	H6A1	240.6	239.6
H6A2	C6A	O6A	HO6A	317.3	3.9
HO6A	O6A	C6A	H6A1	196.3	243.2
HO6A	O6A	C6A	H6A2	317.3	3.9