PDB Chemical Component 9MC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9MC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
C5 |
1.512 |
1.543 |
| C4 |
C3 |
1.567 |
1.539 |
| C5 |
C2 |
1.559 |
1.549 |
| C3 |
C1 |
1.561 |
1.542 |
| C7 |
C8 |
1.416 |
1.380 |
| C7 |
C6 |
1.429 |
1.383 |
| C2 |
C1 |
1.533 |
1.549 |
| O1 |
C13 |
1.413 |
1.429 |
| C8 |
C17 |
1.437 |
1.394 |
| C1 |
C6 |
1.534 |
1.507 |
| C13 |
C14 |
1.563 |
1.531 |
| C6 |
C20 |
1.431 |
1.383 |
| C10 |
C16 |
1.434 |
1.381 |
| C10 |
C9 |
1.372 |
1.393 |
| C16 |
C15 |
1.432 |
1.383 |
| C17 |
C9 |
1.448 |
1.484 |
| C17 |
C18 |
1.417 |
1.394 |
| C9 |
C11 |
1.424 |
1.392 |
| C14 |
S1 |
1.817 |
1.814 |
| C20 |
C18 |
1.411 |
1.380 |
| C20 |
C19 |
1.508 |
1.506 |
| O2 |
S1 |
1.419 |
1.421 |
| C15 |
S1 |
1.764 |
1.761 |
| C15 |
C12 |
1.384 |
1.384 |
| S1 |
O3 |
1.512 |
1.421 |
| C11 |
C12 |
1.394 |
1.381 |
| C26 |
N1 |
1.375 |
1.318 |
| C26 |
C25 |
1.407 |
1.382 |
| N1 |
C22 |
1.363 |
1.318 |
| C19 |
C21 |
1.510 |
1.531 |
| C19 |
C27 |
1.531 |
1.530 |
| C21 |
C27 |
1.513 |
1.530 |
| C25 |
C24 |
1.425 |
1.387 |
| C22 |
C27 |
1.527 |
1.507 |
| C22 |
C23 |
1.429 |
1.382 |
| C24 |
C23 |
1.402 |
1.386 |
| C2 |
H1 |
1.100 |
1.091 |
| C2 |
H2 |
1.100 |
1.090 |
| C12 |
H3 |
1.080 |
1.080 |
| C13 |
H4 |
1.100 |
1.090 |
| C13 |
H5 |
1.100 |
1.090 |
| C14 |
H6 |
1.099 |
1.091 |
| C14 |
H7 |
1.101 |
1.090 |
| C18 |
H8 |
1.079 |
1.079 |
| C19 |
H9 |
1.100 |
1.090 |
| C5 |
H10 |
1.100 |
1.090 |
| C5 |
H11 |
1.100 |
1.090 |
| C7 |
H12 |
1.080 |
1.080 |
| O1 |
H13 |
0.950 |
0.968 |
| C16 |
H14 |
1.080 |
1.080 |
| C10 |
H15 |
1.079 |
1.081 |
| C11 |
H16 |
1.080 |
1.081 |
| C8 |
H17 |
1.080 |
1.080 |
| C1 |
H18 |
1.100 |
1.090 |
| C3 |
H19 |
1.100 |
1.090 |
| C3 |
H20 |
1.100 |
1.089 |
| C4 |
H21 |
1.100 |
1.090 |
| C4 |
H22 |
1.100 |
1.090 |
| C27 |
H23 |
1.099 |
1.090 |
| C21 |
H24 |
1.100 |
1.090 |
| C21 |
H25 |
1.100 |
1.089 |
| C23 |
H26 |
1.080 |
1.081 |
| C24 |
H27 |
1.080 |
1.079 |
| C25 |
H28 |
1.081 |
1.080 |
| C26 |
H29 |
1.080 |
1.081 |
Bond Angles for 9MC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C5 |
H10 |
109.7 |
110.5 |
| C4 |
C5 |
H11 |
109.7 |
110.6 |
| C4 |
C3 |
H19 |
111.0 |
110.0 |
| C4 |
C3 |
H20 |
111.0 |
110.1 |
| C5 |
C2 |
C1 |
102.9 |
102.8 |
| C5 |
C2 |
H1 |
111.1 |
110.7 |
| C5 |
C2 |
H2 |
111.1 |
110.9 |
| C3 |
C1 |
H18 |
107.5 |
110.6 |
| C8 |
C7 |
H12 |
117.9 |
119.9 |
| C7 |
C8 |
H17 |
121.1 |
120.1 |
| C2 |
C1 |
C6 |
113.5 |
110.5 |
| C1 |
C2 |
H1 |
111.1 |
110.7 |
| C1 |
C2 |
H2 |
111.1 |
110.8 |
| C2 |
C1 |
H18 |
107.8 |
110.4 |
| O1 |
C13 |
H4 |
110.7 |
109.5 |
| O1 |
C13 |
H5 |
110.7 |
109.5 |
| C13 |
C14 |
S1 |
117.7 |
109.5 |
| C14 |
C13 |
H4 |
110.7 |
109.5 |
| C14 |
C13 |
H5 |
110.6 |
109.4 |
| C13 |
C14 |
H6 |
107.4 |
109.5 |
| C13 |
C14 |
H7 |
107.4 |
109.5 |
| C10 |
C16 |
H14 |
122.3 |
119.9 |
| C10 |
C9 |
C11 |
118.9 |
119.8 |
| C18 |
C17 |
C9 |
119.5 |
120.1 |
| C17 |
C9 |
C11 |
120.3 |
120.1 |
| C17 |
C18 |
H8 |
118.0 |
120.0 |
| C9 |
C11 |
H16 |
120.7 |
120.1 |
| C14 |
S1 |
C15 |
109.9 |
104.4 |
| C14 |
S1 |
O3 |
105.7 |
110.5 |
| S1 |
C14 |
H6 |
107.4 |
109.5 |
| S1 |
C14 |
H7 |
107.4 |
109.5 |
| C20 |
C18 |
H8 |
117.9 |
120.1 |
| C20 |
C19 |
C21 |
124.4 |
117.5 |
| C20 |
C19 |
C27 |
119.7 |
117.5 |
| C20 |
C19 |
H9 |
114.2 |
115.6 |
| C15 |
S1 |
O3 |
107.4 |
104.3 |
| C15 |
C12 |
H3 |
118.7 |
120.0 |
| C11 |
C12 |
H3 |
118.7 |
120.0 |
| C26 |
C25 |
H28 |
123.4 |
120.5 |
| N1 |
C22 |
C27 |
120.1 |
119.6 |
| N1 |
C22 |
C23 |
118.4 |
120.8 |
| C27 |
C19 |
C21 |
59.7 |
60.0 |
| C19 |
C21 |
C27 |
60.9 |
60.0 |
| C21 |
C19 |
H9 |
114.2 |
117.4 |
| C19 |
C21 |
H24 |
119.9 |
117.5 |
| C19 |
C21 |
H25 |
119.9 |
117.5 |
| C27 |
C19 |
H9 |
113.8 |
117.5 |
| C19 |
C27 |
H23 |
112.6 |
117.5 |
| C21 |
C27 |
H23 |
112.9 |
117.5 |
| C25 |
C24 |
H27 |
119.7 |
120.8 |
| C22 |
C27 |
H23 |
112.6 |
115.6 |
| C22 |
C23 |
H26 |
119.0 |
120.4 |
| C24 |
C23 |
H26 |
119.0 |
120.4 |
| H1 |
C2 |
H2 |
109.5 |
110.7 |
| H4 |
C13 |
H5 |
109.5 |
109.5 |
| H6 |
C14 |
H7 |
109.4 |
109.5 |
| H10 |
C5 |
H11 |
109.5 |
110.5 |
| H19 |
C3 |
H20 |
109.4 |
110.0 |
| H21 |
C4 |
H22 |
109.5 |
110.1 |
| H24 |
C21 |
H25 |
109.4 |
115.6 |
Torsion Angles for 9MC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C5 |
C2 |
H1 |
96.2 |
80.4 |
| C4 |
C5 |
C2 |
H2 |
218.3 |
203.7 |
| H10 |
C5 |
C4 |
H11 |
239.7 |
122.6 |
| C3 |
C4 |
C5 |
H10 |
120.3 |
265.0 |
| C3 |
C4 |
C5 |
H11 |
240.6 |
142.3 |
| C4 |
C3 |
C1 |
H18 |
78.3 |
95.1 |
| H19 |
C3 |
C4 |
H20 |
238.0 |
121.3 |
| C5 |
C2 |
C1 |
C6 |
162.7 |
156.6 |
| C1 |
C2 |
C5 |
H1 |
241.1 |
241.7 |
| C1 |
C2 |
C5 |
H2 |
118.9 |
118.4 |
| C5 |
C2 |
C1 |
H18 |
281.9 |
279.1 |
| H1 |
C2 |
C5 |
H2 |
237.9 |
236.7 |
| C3 |
C1 |
C2 |
H1 |
277.3 |
279.6 |
| C3 |
C1 |
C2 |
H2 |
155.2 |
156.4 |
| C2 |
C1 |
C3 |
H18 |
245.5 |
241.3 |
| C2 |
C1 |
C6 |
C7 |
299.3 |
299.9 |
| C5 |
C2 |
C1 |
H1 |
118.9 |
118.2 |
| C5 |
C2 |
C1 |
H2 |
241.0 |
241.5 |
| C3 |
C1 |
C2 |
H18 |
114.3 |
118.7 |
| H1 |
C2 |
C1 |
H2 |
122.1 |
123.2 |
| C14 |
C13 |
O1 |
H4 |
240.8 |
120.0 |
| C14 |
C13 |
O1 |
H5 |
119.2 |
240.0 |
| O1 |
C13 |
C14 |
H6 |
41.7 |
300.0 |
| O1 |
C13 |
C14 |
H7 |
159.3 |
60.0 |
| H4 |
C13 |
O1 |
H5 |
238.4 |
120.1 |
| C8 |
C17 |
C18 |
H8 |
183.1 |
179.7 |
| C6 |
C1 |
C2 |
H1 |
43.7 |
38.4 |
| C6 |
C1 |
C2 |
H2 |
281.6 |
275.2 |
| C2 |
C1 |
C6 |
H18 |
119.3 |
122.5 |
| O1 |
C13 |
C14 |
H4 |
119.2 |
240.0 |
| O1 |
C13 |
C14 |
H5 |
240.8 |
120.0 |
| C13 |
C14 |
S1 |
C15 |
71.6 |
180.0 |
| C13 |
C14 |
S1 |
O3 |
187.2 |
291.6 |
| S1 |
C14 |
C13 |
H6 |
238.8 |
240.0 |
| S1 |
C14 |
C13 |
H7 |
121.2 |
120.0 |
| H4 |
C13 |
C14 |
H5 |
121.6 |
240.0 |
| H6 |
C14 |
C13 |
H7 |
242.4 |
240.0 |
| C2 |
C1 |
C6 |
C20 |
121.6 |
120.0 |
| C6 |
C20 |
C18 |
H8 |
176.7 |
180.0 |
| C6 |
C20 |
C19 |
C21 |
62.0 |
171.4 |
| C6 |
C20 |
C19 |
C27 |
133.6 |
240.0 |
| C6 |
C20 |
C19 |
H9 |
273.5 |
25.7 |
| C16 |
C10 |
C9 |
C11 |
355.6 |
359.8 |
| C17 |
C9 |
C10 |
C11 |
185.8 |
180.5 |
| C10 |
C9 |
C11 |
H16 |
184.0 |
180.0 |
| C16 |
C15 |
C12 |
H3 |
178.0 |
179.9 |
| C10 |
C9 |
C17 |
C11 |
174.1 |
179.5 |
| C9 |
C17 |
C18 |
H8 |
1.1 |
359.9 |
| C17 |
C9 |
C11 |
H16 |
358.2 |
359.5 |
| C18 |
C17 |
C9 |
C11 |
22.0 |
180.0 |
| C20 |
C18 |
C17 |
H8 |
180.0 |
180.0 |
| C9 |
C11 |
C12 |
H3 |
179.1 |
179.8 |
| S1 |
C14 |
C13 |
H4 |
161.3 |
300.0 |
| S1 |
C14 |
C13 |
H5 |
39.8 |
60.0 |
| C13 |
C14 |
S1 |
H6 |
121.2 |
120.0 |
| C13 |
C14 |
S1 |
H7 |
238.8 |
240.0 |
| C15 |
S1 |
C14 |
O3 |
244.4 |
248.4 |
| H6 |
C14 |
S1 |
H7 |
117.6 |
120.0 |
| C20 |
C18 |
C17 |
C9 |
181.1 |
180.0 |
| C17 |
C18 |
C20 |
H8 |
180.0 |
180.0 |
| C19 |
C20 |
C18 |
H8 |
358.8 |
0.0 |
| C27 |
C19 |
C20 |
C21 |
71.6 |
68.6 |
| C20 |
C19 |
C21 |
C27 |
107.1 |
107.5 |
| C21 |
C19 |
C20 |
H9 |
148.4 |
145.7 |
| C20 |
C19 |
C21 |
H24 |
216.8 |
215.0 |
| C20 |
C19 |
C21 |
H25 |
357.4 |
0.0 |
| C27 |
C19 |
C20 |
H9 |
220.1 |
214.3 |
| C20 |
C19 |
C27 |
H23 |
141.1 |
145.0 |
| O2 |
S1 |
C14 |
H6 |
198.1 |
308.4 |
| O2 |
S1 |
C14 |
H7 |
80.5 |
188.3 |
| C14 |
S1 |
C15 |
O3 |
114.5 |
116.0 |
| C15 |
S1 |
C14 |
H6 |
310.5 |
60.0 |
| C15 |
S1 |
C14 |
H7 |
192.8 |
300.0 |
| S1 |
C15 |
C12 |
H3 |
357.5 |
360.0 |
| C11 |
C12 |
C15 |
H3 |
180.0 |
180.3 |
| C14 |
S1 |
O3 |
C15 |
242.7 |
248.3 |
| O3 |
S1 |
C14 |
H6 |
66.0 |
171.6 |
| O3 |
S1 |
C14 |
H7 |
308.4 |
51.6 |
| C15 |
C12 |
C11 |
H3 |
180.0 |
179.7 |
| C26 |
C25 |
C24 |
H27 |
180.3 |
180.1 |
| N1 |
C22 |
C27 |
H23 |
168.2 |
309.3 |
| N1 |
C22 |
C23 |
H26 |
177.7 |
180.0 |
| C20 |
C19 |
C21 |
H9 |
211.6 |
215.0 |
| C27 |
C19 |
C21 |
H9 |
104.5 |
107.5 |
| C21 |
C19 |
C27 |
H23 |
255.9 |
252.5 |
| C19 |
C21 |
C27 |
H23 |
103.6 |
107.5 |
| H24 |
C21 |
C19 |
H25 |
219.4 |
214.9 |
| C20 |
C19 |
C27 |
C21 |
245.2 |
252.5 |
| C20 |
C19 |
C27 |
H9 |
140.1 |
145.1 |
| N1 |
C22 |
C27 |
C19 |
308.5 |
95.0 |
| C27 |
C19 |
C21 |
C27 |
-0.0 |
360.0 |
| C21 |
C19 |
C27 |
H9 |
254.9 |
252.6 |
| C27 |
C19 |
C21 |
H24 |
109.7 |
107.5 |
| C27 |
C19 |
C21 |
H25 |
250.3 |
252.5 |
| C21 |
C27 |
C19 |
H23 |
104.1 |
107.5 |
| C22 |
C27 |
C19 |
H23 |
219.7 |
215.0 |
| N1 |
C22 |
C27 |
C21 |
22.6 |
163.6 |
| C27 |
C21 |
C19 |
H9 |
255.5 |
252.5 |
| C19 |
C21 |
C27 |
H24 |
109.7 |
107.5 |
| C19 |
C21 |
C27 |
H25 |
250.3 |
252.5 |
| C21 |
C27 |
C19 |
H9 |
105.1 |
107.4 |
| C19 |
C27 |
C21 |
H23 |
256.4 |
252.5 |
| C22 |
C27 |
C21 |
H23 |
145.5 |
145.1 |
| C25 |
C24 |
C23 |
H26 |
182.7 |
180.0 |
| N1 |
C22 |
C27 |
C23 |
185.6 |
180.0 |
| C22 |
C27 |
C19 |
H9 |
220.7 |
215.0 |
| C19 |
C27 |
C22 |
H23 |
140.3 |
145.6 |
| C21 |
C27 |
C22 |
H23 |
214.4 |
214.3 |
| N1 |
C22 |
C23 |
C27 |
174.5 |
180.0 |
| C23 |
C22 |
C27 |
H23 |
342.6 |
129.4 |
| C24 |
C23 |
C22 |
H26 |
180.0 |
180.0 |
| C22 |
C23 |
C24 |
H26 |
180.0 |
180.0 |
| C5 |
C2 |
H1 |
C1 |
246.1 |
246.7 |
| C5 |
C2 |
H1 |
H2 |
123.1 |
123.4 |
| H1 |
C2 |
C1 |
C6 |
43.7 |
38.4 |
| C1 |
C2 |
H1 |
H2 |
237.0 |
236.7 |
| H1 |
C2 |
C1 |
H18 |
163.0 |
160.9 |
| C5 |
C2 |
H2 |
C1 |
113.9 |
113.5 |
| C5 |
C2 |
H2 |
H1 |
236.9 |
236.7 |
| H2 |
C2 |
C1 |
C6 |
281.6 |
275.2 |
| C1 |
C2 |
H2 |
H1 |
123.0 |
123.2 |
| H2 |
C2 |
C1 |
H18 |
40.9 |
37.7 |
| O1 |
C13 |
H4 |
H5 |
122.3 |
239.9 |
| H4 |
C13 |
C14 |
S1 |
161.3 |
300.0 |
| C14 |
C13 |
H4 |
H5 |
237.8 |
119.9 |
| H4 |
C13 |
C14 |
H6 |
282.5 |
60.0 |
| H4 |
C13 |
C14 |
H7 |
40.1 |
180.0 |
| O1 |
C13 |
H5 |
H4 |
237.7 |
120.1 |
| H5 |
C13 |
C14 |
S1 |
39.8 |
60.0 |
| C14 |
C13 |
H5 |
H4 |
122.2 |
240.0 |
| H5 |
C13 |
C14 |
H6 |
161.0 |
180.0 |
| H5 |
C13 |
C14 |
H7 |
278.6 |
300.0 |
| C13 |
C14 |
H6 |
S1 |
232.5 |
240.0 |
| H6 |
C14 |
C13 |
H4 |
282.5 |
60.0 |
| H6 |
C14 |
C13 |
H5 |
161.0 |
180.0 |
| C13 |
C14 |
H6 |
H7 |
116.3 |
120.0 |
| H6 |
C14 |
S1 |
C15 |
310.5 |
60.0 |
| H6 |
C14 |
S1 |
O3 |
66.0 |
171.6 |
| S1 |
C14 |
H6 |
H7 |
243.7 |
240.0 |
| C13 |
C14 |
H7 |
S1 |
127.5 |
120.0 |
| H7 |
C14 |
C13 |
H4 |
40.1 |
180.0 |
| H7 |
C14 |
C13 |
H5 |
278.6 |
300.0 |
| C13 |
C14 |
H7 |
H6 |
243.8 |
240.0 |
| H7 |
C14 |
S1 |
C15 |
192.8 |
300.0 |
| H7 |
C14 |
S1 |
O3 |
308.4 |
51.6 |
| S1 |
C14 |
H7 |
H6 |
116.3 |
120.0 |
| H8 |
C18 |
C17 |
C9 |
1.1 |
359.9 |
| C20 |
C19 |
H9 |
C21 |
151.7 |
145.7 |
| C20 |
C19 |
H9 |
C27 |
217.7 |
214.3 |
| C27 |
C19 |
H9 |
C21 |
294.0 |
291.4 |
| H9 |
C19 |
C21 |
C27 |
255.5 |
252.5 |
| H9 |
C19 |
C21 |
H24 |
5.2 |
360.0 |
| H9 |
C19 |
C21 |
H25 |
145.8 |
145.1 |
| H9 |
C19 |
C27 |
H23 |
1.0 |
359.9 |
| C4 |
C5 |
H10 |
H11 |
120.5 |
237.3 |
| H10 |
C5 |
C2 |
C1 |
217.4 |
80.7 |
| H10 |
C5 |
C2 |
H1 |
336.4 |
199.0 |
| H10 |
C5 |
C2 |
H2 |
98.5 |
322.3 |
| C4 |
C5 |
H11 |
H10 |
239.5 |
122.6 |
| H11 |
C5 |
C2 |
C1 |
97.1 |
203.3 |
| H11 |
C5 |
C2 |
H1 |
216.0 |
321.6 |
| H11 |
C5 |
C2 |
H2 |
338.2 |
84.9 |
| H12 |
C7 |
C8 |
H17 |
5.3 |
0.5 |
| H13 |
O1 |
C13 |
H4 |
299.2 |
60.1 |
| H13 |
O1 |
C13 |
H5 |
60.8 |
300.0 |
| H15 |
C10 |
C16 |
H14 |
1.5 |
0.1 |
| H15 |
C10 |
C9 |
C11 |
175.6 |
179.7 |
| H16 |
C11 |
C12 |
H3 |
359.1 |
0.3 |
| H17 |
C8 |
C7 |
H12 |
5.3 |
0.5 |
| C2 |
C1 |
H18 |
C6 |
237.1 |
237.5 |
| H18 |
C1 |
C2 |
H1 |
163.0 |
160.9 |
| H18 |
C1 |
C2 |
H2 |
40.9 |
37.7 |
| C4 |
C3 |
H19 |
H20 |
122.9 |
238.6 |
| H19 |
C3 |
C1 |
H18 |
319.4 |
214.4 |
| C4 |
C3 |
H20 |
H19 |
237.1 |
121.4 |
| H20 |
C3 |
C1 |
H18 |
197.3 |
335.7 |
| H21 |
C4 |
C5 |
H10 |
239.9 |
24.2 |
| H21 |
C4 |
C5 |
H11 |
0.2 |
261.6 |
| H21 |
C4 |
C3 |
H19 |
21.0 |
121.5 |
| H21 |
C4 |
C3 |
H20 |
143.0 |
0.1 |
| H22 |
C4 |
C5 |
H10 |
0.8 |
145.7 |
| H22 |
C4 |
C5 |
H11 |
121.1 |
23.1 |
| H22 |
C4 |
C3 |
H19 |
260.1 |
360.0 |
| H22 |
C4 |
C3 |
H20 |
22.1 |
238.6 |
| H23 |
C27 |
C19 |
C21 |
255.9 |
252.5 |
| H23 |
C27 |
C19 |
H9 |
1.0 |
359.9 |
| C19 |
C21 |
H24 |
C27 |
288.5 |
291.4 |
| H24 |
C21 |
C19 |
H9 |
5.2 |
360.0 |
| C19 |
C21 |
H24 |
H25 |
144.3 |
145.7 |
| H24 |
C21 |
C27 |
H23 |
353.9 |
360.0 |
| C19 |
C21 |
H25 |
C27 |
71.5 |
68.6 |
| H25 |
C21 |
C19 |
H9 |
145.8 |
145.1 |
| C19 |
C21 |
H25 |
H24 |
215.7 |
214.3 |
| H25 |
C21 |
C27 |
H23 |
213.3 |
215.0 |
| H27 |
C24 |
C23 |
H26 |
2.7 |
360.0 |
| H28 |
C25 |
C24 |
H27 |
0.3 |
0.0 |
| H29 |
C26 |
C25 |
H28 |
355.8 |
0.1 |