PDB Chemical Component 9M3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9M3
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C25 |
O26 |
1.442 |
1.429 |
| C25 |
C24 |
1.543 |
1.529 |
| O26 |
C27 |
1.439 |
1.430 |
| C27 |
C28 |
1.550 |
1.533 |
| C24 |
N23 |
1.480 |
1.471 |
| C28 |
N23 |
1.477 |
1.472 |
| N23 |
C22 |
1.353 |
1.349 |
| C22 |
O29 |
1.233 |
1.215 |
| C22 |
C19 |
1.525 |
1.475 |
| C19 |
C20 |
1.415 |
1.397 |
| C19 |
C18 |
1.404 |
1.398 |
| C41 |
C38 |
1.517 |
1.530 |
| C20 |
C21 |
1.415 |
1.376 |
| C18 |
C17 |
1.411 |
1.376 |
| C42 |
C38 |
1.510 |
1.530 |
| C34 |
C33 |
1.420 |
1.379 |
| C34 |
C35 |
1.406 |
1.384 |
| C33 |
C32 |
1.398 |
1.396 |
| C21 |
C16 |
1.409 |
1.392 |
| C17 |
C16 |
1.409 |
1.392 |
| C38 |
C35 |
1.519 |
1.506 |
| C38 |
C39 |
1.524 |
1.530 |
| C16 |
N24 |
1.377 |
1.394 |
| C35 |
C36 |
1.396 |
1.384 |
| N30 |
C7 |
1.400 |
1.398 |
| N30 |
C31 |
1.272 |
1.348 |
| C6 |
C7 |
1.393 |
1.389 |
| C6 |
C5 |
1.406 |
1.382 |
| C7 |
C2 |
1.490 |
1.386 |
| C5 |
C4 |
1.395 |
1.380 |
| N24 |
C11 |
1.381 |
1.382 |
| C32 |
C31 |
1.532 |
1.479 |
| C32 |
C37 |
1.397 |
1.396 |
| N12 |
C11 |
1.370 |
1.329 |
| N12 |
C13 |
1.374 |
1.330 |
| C2 |
C1 |
1.524 |
1.507 |
| C2 |
C3 |
1.509 |
1.393 |
| C4 |
C3 |
1.396 |
1.395 |
| C3 |
C13 |
1.495 |
1.484 |
| C11 |
N10 |
1.375 |
1.328 |
| C31 |
O43 |
1.251 |
1.215 |
| C36 |
C37 |
1.407 |
1.379 |
| C13 |
N8 |
1.362 |
1.330 |
| N10 |
C9 |
1.374 |
1.329 |
| N8 |
C9 |
1.348 |
1.330 |
| C9 |
N14 |
1.362 |
1.380 |
| C5 |
H1 |
1.080 |
1.080 |
| C6 |
H2 |
1.080 |
1.081 |
| C4 |
H3 |
1.080 |
1.079 |
| C37 |
H4 |
1.080 |
1.080 |
| C36 |
H5 |
1.080 |
1.081 |
| C42 |
H6 |
1.100 |
1.090 |
| C42 |
H7 |
1.100 |
1.090 |
| C42 |
H8 |
1.100 |
1.090 |
| C41 |
H9 |
1.100 |
1.090 |
| C41 |
H10 |
1.100 |
1.090 |
| C41 |
H11 |
1.100 |
1.090 |
| C39 |
H12 |
1.100 |
1.090 |
| C39 |
H13 |
1.100 |
1.090 |
| C39 |
H14 |
1.100 |
1.090 |
| C34 |
H15 |
1.080 |
1.081 |
| C33 |
H16 |
1.080 |
1.080 |
| N30 |
H17 |
1.000 |
0.970 |
| C1 |
H18 |
1.100 |
1.090 |
| C1 |
H19 |
1.100 |
1.090 |
| C1 |
H20 |
1.100 |
1.091 |
| N14 |
H21 |
1.000 |
0.970 |
| N14 |
H22 |
1.000 |
0.970 |
| N24 |
H23 |
1.000 |
0.969 |
| C21 |
H24 |
1.080 |
1.080 |
| C20 |
H25 |
1.080 |
1.081 |
| C18 |
H26 |
1.080 |
1.080 |
| C17 |
H27 |
1.080 |
1.081 |
| C28 |
H28 |
1.100 |
1.090 |
| C28 |
H29 |
1.100 |
1.089 |
| C27 |
H30 |
1.100 |
1.089 |
| C27 |
H31 |
1.100 |
1.090 |
| C25 |
H32 |
1.099 |
1.090 |
| C25 |
H33 |
1.100 |
1.090 |
| C24 |
H34 |
1.100 |
1.090 |
| C24 |
H35 |
1.100 |
1.090 |
Bond Angles for 9M3
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C24 |
C25 |
H32 |
108.3 |
109.5 |
| C24 |
C25 |
H33 |
108.3 |
109.4 |
| C25 |
C24 |
H34 |
109.6 |
109.7 |
| C25 |
C24 |
H35 |
109.6 |
109.7 |
| O26 |
C27 |
H30 |
108.7 |
109.5 |
| O26 |
C27 |
H31 |
108.7 |
109.5 |
| C27 |
C28 |
H28 |
109.3 |
109.7 |
| C27 |
C28 |
H29 |
109.3 |
109.7 |
| C19 |
C20 |
H25 |
119.5 |
120.0 |
| C19 |
C18 |
C17 |
120.9 |
119.9 |
| C19 |
C18 |
H26 |
119.5 |
120.1 |
| C41 |
C38 |
C39 |
103.0 |
109.4 |
| C20 |
C21 |
H24 |
119.5 |
120.0 |
| C17 |
C18 |
H26 |
119.6 |
120.0 |
| C18 |
C17 |
H27 |
119.1 |
120.0 |
| C42 |
C38 |
C39 |
108.4 |
109.5 |
| C33 |
C34 |
H15 |
118.8 |
119.9 |
| C34 |
C33 |
H16 |
119.3 |
120.2 |
| C38 |
C39 |
H12 |
109.5 |
109.4 |
| C38 |
C39 |
H13 |
109.4 |
109.5 |
| C38 |
C39 |
H14 |
109.5 |
109.5 |
| C16 |
N24 |
H23 |
114.6 |
120.0 |
| C35 |
C36 |
H5 |
119.3 |
119.9 |
| C6 |
C7 |
N30 |
121.6 |
120.0 |
| C7 |
N30 |
H17 |
116.6 |
120.0 |
| C6 |
C7 |
C2 |
119.2 |
120.0 |
| C7 |
C6 |
H2 |
119.1 |
119.9 |
| C6 |
C5 |
C4 |
121.6 |
120.2 |
| C6 |
C5 |
H1 |
119.2 |
119.9 |
| C7 |
C2 |
C1 |
119.1 |
120.1 |
| C7 |
C2 |
C3 |
116.9 |
119.8 |
| C5 |
C4 |
C3 |
121.3 |
120.0 |
| C4 |
C5 |
H1 |
119.2 |
119.9 |
| C5 |
C4 |
H3 |
119.4 |
120.1 |
| C32 |
C37 |
H4 |
118.3 |
120.1 |
| N12 |
C11 |
N10 |
117.6 |
120.0 |
| C1 |
C2 |
C3 |
124.0 |
120.1 |
| C2 |
C1 |
H18 |
109.5 |
109.5 |
| C2 |
C1 |
H19 |
109.4 |
109.4 |
| C2 |
C1 |
H20 |
109.5 |
109.5 |
| C2 |
C3 |
C4 |
119.3 |
119.8 |
| C2 |
C3 |
C13 |
122.2 |
120.1 |
| C4 |
C3 |
C13 |
118.5 |
120.1 |
| C3 |
C4 |
H3 |
119.3 |
120.0 |
| C3 |
C13 |
N8 |
120.7 |
119.9 |
| C11 |
N10 |
C9 |
121.2 |
120.0 |
| C36 |
C37 |
H4 |
118.4 |
120.0 |
| C13 |
N8 |
C9 |
119.6 |
119.9 |
| N8 |
C9 |
N10 |
120.3 |
120.0 |
| N10 |
C9 |
N14 |
122.4 |
120.0 |
| N8 |
C9 |
N14 |
117.3 |
120.0 |
| C9 |
N14 |
H21 |
109.5 |
120.0 |
| C9 |
N14 |
H22 |
109.5 |
120.0 |
| H6 |
C42 |
H7 |
109.4 |
109.5 |
| H6 |
C42 |
H8 |
109.5 |
109.4 |
| H7 |
C42 |
H8 |
109.5 |
109.5 |
| H9 |
C41 |
H10 |
109.5 |
109.5 |
| H9 |
C41 |
H11 |
109.4 |
109.5 |
| H10 |
C41 |
H11 |
109.5 |
109.5 |
| H12 |
C39 |
H13 |
109.5 |
109.5 |
| H12 |
C39 |
H14 |
109.5 |
109.5 |
| H13 |
C39 |
H14 |
109.5 |
109.5 |
| H18 |
C1 |
H19 |
109.5 |
109.5 |
| H18 |
C1 |
H20 |
109.5 |
109.4 |
| H19 |
C1 |
H20 |
109.5 |
109.5 |
| H21 |
N14 |
H22 |
109.5 |
120.0 |
| H28 |
C28 |
H29 |
109.5 |
109.7 |
| H30 |
C27 |
H31 |
109.5 |
109.5 |
| H32 |
C25 |
H33 |
109.5 |
109.6 |
| H34 |
C24 |
H35 |
109.4 |
109.7 |
Torsion Angles for 9M3
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C25 |
O26 |
C27 |
H30 |
179.8 |
177.5 |
| C25 |
O26 |
C27 |
H31 |
299.0 |
57.4 |
| H32 |
C25 |
C24 |
H33 |
118.7 |
120.1 |
| H34 |
C24 |
C25 |
H35 |
239.8 |
120.6 |
| O26 |
C27 |
C28 |
H28 |
91.0 |
292.6 |
| O26 |
C27 |
C28 |
H29 |
210.7 |
172.0 |
| H30 |
C27 |
O26 |
H31 |
240.8 |
120.1 |
| H28 |
C28 |
C27 |
H29 |
240.2 |
120.6 |
| C22 |
C19 |
C20 |
H25 |
2.0 |
0.1 |
| C22 |
C19 |
C18 |
H26 |
358.0 |
0.1 |
| C19 |
C20 |
C21 |
H24 |
180.5 |
180.0 |
| C18 |
C19 |
C20 |
H25 |
178.9 |
180.1 |
| C17 |
C18 |
C19 |
H26 |
180.0 |
179.7 |
| C19 |
C18 |
C17 |
H27 |
179.9 |
180.1 |
| C42 |
C38 |
C41 |
C39 |
244.2 |
240.0 |
| C41 |
C38 |
C39 |
H12 |
180.0 |
180.0 |
| C41 |
C38 |
C39 |
H13 |
300.0 |
300.0 |
| C41 |
C38 |
C39 |
H14 |
60.0 |
60.0 |
| C19 |
C18 |
C17 |
H26 |
180.0 |
180.3 |
| C41 |
C38 |
C42 |
C39 |
112.5 |
120.0 |
| C42 |
C38 |
C39 |
H12 |
297.7 |
300.0 |
| C42 |
C38 |
C39 |
H13 |
57.8 |
59.9 |
| C42 |
C38 |
C39 |
H14 |
177.8 |
180.0 |
| C34 |
C35 |
C36 |
H5 |
179.0 |
180.0 |
| C33 |
C32 |
C37 |
H4 |
177.7 |
180.3 |
| C21 |
C16 |
N24 |
H23 |
359.7 |
148.2 |
| C17 |
C16 |
N24 |
H23 |
180.1 |
328.0 |
| C38 |
C35 |
C36 |
H5 |
359.6 |
0.0 |
| H12 |
C39 |
C38 |
H13 |
240.0 |
240.0 |
| H12 |
C39 |
C38 |
H14 |
120.0 |
120.0 |
| H13 |
C39 |
C38 |
H14 |
240.0 |
240.0 |
| C35 |
C36 |
C37 |
H4 |
181.8 |
180.0 |
| C6 |
C7 |
N30 |
C2 |
178.1 |
179.9 |
| N30 |
C7 |
C6 |
H2 |
0.4 |
0.0 |
| N30 |
C7 |
C2 |
C1 |
359.8 |
359.7 |
| N30 |
C7 |
C2 |
C3 |
180.1 |
180.3 |
| C6 |
C7 |
N30 |
C31 |
288.0 |
33.1 |
| C6 |
C7 |
N30 |
H17 |
107.9 |
213.1 |
| C7 |
C6 |
C5 |
C4 |
0.8 |
0.0 |
| C7 |
C6 |
C5 |
H1 |
180.8 |
179.8 |
| C6 |
C7 |
C2 |
C1 |
181.7 |
179.8 |
| C6 |
C7 |
C2 |
C3 |
2.0 |
0.3 |
| C6 |
C5 |
C4 |
C3 |
359.3 |
359.8 |
| C4 |
C5 |
C6 |
H1 |
180.0 |
180.3 |
| C6 |
C5 |
C4 |
H3 |
179.3 |
179.7 |
| C6 |
C7 |
C2 |
N30 |
181.9 |
180.1 |
| C2 |
C7 |
C6 |
H2 |
178.5 |
180.0 |
| C1 |
C2 |
C7 |
C3 |
179.7 |
179.4 |
| C7 |
C2 |
C1 |
H18 |
90.2 |
265.5 |
| C7 |
C2 |
C1 |
H19 |
210.2 |
25.5 |
| C7 |
C2 |
C1 |
H20 |
330.1 |
145.5 |
| C7 |
C2 |
C3 |
C4 |
358.1 |
359.5 |
| C7 |
C2 |
C3 |
C13 |
181.3 |
179.9 |
| C6 |
C5 |
C4 |
H1 |
180.0 |
179.7 |
| C2 |
C3 |
C4 |
C5 |
1.3 |
0.5 |
| C5 |
C4 |
C3 |
C13 |
178.2 |
180.0 |
| C3 |
C4 |
C5 |
H3 |
180.0 |
180.0 |
| C36 |
C37 |
C32 |
H4 |
180.0 |
180.0 |
| N12 |
C11 |
N10 |
C9 |
359.3 |
0.2 |
| N12 |
C13 |
N8 |
C9 |
359.8 |
0.2 |
| C7 |
C2 |
C1 |
C3 |
180.3 |
180.6 |
| C1 |
C2 |
C3 |
C4 |
178.4 |
180.0 |
| C1 |
C2 |
C3 |
C13 |
1.6 |
0.5 |
| H18 |
C1 |
C2 |
H19 |
240.0 |
239.9 |
| H18 |
C1 |
C2 |
H20 |
120.0 |
119.9 |
| H19 |
C1 |
C2 |
H20 |
240.0 |
240.0 |
| C7 |
C2 |
C3 |
C1 |
179.7 |
179.4 |
| C5 |
C4 |
C3 |
C2 |
1.3 |
0.5 |
| C3 |
C2 |
C1 |
H18 |
269.8 |
84.9 |
| C3 |
C2 |
C1 |
H19 |
29.8 |
205.0 |
| C3 |
C2 |
C1 |
H20 |
149.8 |
325.0 |
| C4 |
C3 |
C2 |
C13 |
176.8 |
179.5 |
| C2 |
C3 |
C4 |
H3 |
181.3 |
180.5 |
| C2 |
C3 |
C13 |
N8 |
327.4 |
131.1 |
| C3 |
C4 |
C5 |
H1 |
179.3 |
180.1 |
| C5 |
C4 |
C3 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C13 |
183.1 |
180.5 |
| C4 |
C3 |
C13 |
N8 |
150.6 |
311.5 |
| C2 |
C3 |
C13 |
C4 |
176.8 |
179.5 |
| C13 |
C3 |
C4 |
H3 |
358.3 |
0.1 |
| C3 |
C13 |
N8 |
C9 |
178.1 |
179.9 |
| N8 |
C9 |
N10 |
C11 |
0.8 |
359.8 |
| C11 |
N10 |
C9 |
N14 |
180.5 |
179.8 |
| C32 |
C37 |
C36 |
H4 |
180.0 |
180.0 |
| C13 |
N8 |
C9 |
N10 |
359.6 |
360.0 |
| C13 |
N8 |
C9 |
N14 |
179.9 |
180.0 |
| N8 |
C9 |
N10 |
N14 |
180.3 |
180.0 |
| N10 |
C9 |
N14 |
H21 |
360.0 |
180.0 |
| N10 |
C9 |
N14 |
H22 |
120.0 |
0.0 |
| C11 |
N10 |
C9 |
N8 |
0.8 |
359.8 |
| N10 |
C9 |
N8 |
N14 |
179.7 |
180.0 |
| N8 |
C9 |
N14 |
H21 |
179.7 |
360.0 |
| N8 |
C9 |
N14 |
H22 |
299.7 |
180.0 |
| N8 |
C9 |
N14 |
N10 |
179.7 |
180.0 |
| H21 |
N14 |
C9 |
H22 |
240.0 |
180.0 |
| C6 |
C5 |
H1 |
C4 |
180.0 |
180.3 |
| H1 |
C5 |
C4 |
C3 |
179.3 |
180.1 |
| H1 |
C5 |
C4 |
H3 |
359.3 |
0.0 |
| H2 |
C6 |
C7 |
N30 |
0.4 |
0.0 |
| H2 |
C6 |
C7 |
C2 |
178.5 |
180.0 |
| H2 |
C6 |
C5 |
C4 |
180.8 |
180.0 |
| H2 |
C6 |
C5 |
H1 |
0.8 |
359.7 |
| C5 |
C4 |
H3 |
C3 |
180.0 |
180.0 |
| H3 |
C4 |
C5 |
H1 |
359.3 |
0.0 |
| H3 |
C4 |
C3 |
C13 |
358.3 |
0.1 |
| H5 |
C36 |
C37 |
H4 |
1.8 |
360.0 |
| H6 |
C42 |
C38 |
C39 |
67.6 |
180.0 |
| H7 |
C42 |
H6 |
H8 |
120.0 |
120.0 |
| H7 |
C42 |
C38 |
C39 |
187.5 |
300.1 |
| H6 |
C42 |
H7 |
H8 |
239.9 |
240.0 |
| H8 |
C42 |
C38 |
C39 |
307.5 |
60.1 |
| H6 |
C42 |
H8 |
H7 |
120.0 |
120.0 |
| H9 |
C41 |
C38 |
C39 |
295.8 |
300.0 |
| H10 |
C41 |
H9 |
H11 |
120.0 |
120.0 |
| H10 |
C41 |
C38 |
C39 |
55.8 |
60.0 |
| H9 |
C41 |
H10 |
H11 |
240.0 |
240.0 |
| H11 |
C41 |
C38 |
C39 |
175.8 |
180.0 |
| H9 |
C41 |
H11 |
H10 |
120.0 |
120.0 |
| C38 |
C39 |
H12 |
H13 |
120.0 |
120.0 |
| C38 |
C39 |
H12 |
H14 |
240.0 |
240.0 |
| H13 |
C39 |
H12 |
H14 |
120.0 |
120.0 |
| C38 |
C39 |
H13 |
H12 |
240.0 |
240.0 |
| C38 |
C39 |
H13 |
H14 |
120.0 |
120.0 |
| H12 |
C39 |
H13 |
H14 |
240.0 |
240.0 |
| C38 |
C39 |
H14 |
H12 |
120.0 |
120.0 |
| C38 |
C39 |
H14 |
H13 |
240.0 |
240.0 |
| H12 |
C39 |
H14 |
H13 |
120.0 |
120.0 |
| H15 |
C34 |
C33 |
H16 |
358.7 |
359.5 |
| H16 |
C33 |
C34 |
H15 |
358.7 |
359.5 |
| H18 |
C1 |
C2 |
C3 |
269.8 |
84.9 |
| C2 |
C1 |
H18 |
H19 |
120.0 |
120.0 |
| C2 |
C1 |
H18 |
H20 |
240.0 |
240.0 |
| H19 |
C1 |
H18 |
H20 |
120.0 |
120.0 |
| H19 |
C1 |
C2 |
C3 |
29.8 |
205.0 |
| C2 |
C1 |
H19 |
H18 |
240.0 |
239.9 |
| C2 |
C1 |
H19 |
H20 |
120.0 |
120.0 |
| H18 |
C1 |
H19 |
H20 |
240.0 |
240.0 |
| H20 |
C1 |
C2 |
C3 |
149.8 |
325.0 |
| C2 |
C1 |
H20 |
H18 |
120.0 |
120.0 |
| C2 |
C1 |
H20 |
H19 |
240.0 |
240.0 |
| H18 |
C1 |
H20 |
H19 |
120.0 |
120.0 |
| C9 |
N14 |
H21 |
H22 |
120.1 |
180.0 |
| C9 |
N14 |
H22 |
H21 |
239.9 |
180.0 |
| H25 |
C20 |
C21 |
H24 |
0.5 |
360.0 |
| C19 |
C18 |
H26 |
C17 |
180.0 |
179.7 |
| H26 |
C18 |
C17 |
H27 |
359.9 |
359.8 |
| H27 |
C17 |
C18 |
H26 |
359.9 |
359.8 |
| C27 |
C28 |
H28 |
H29 |
119.6 |
239.4 |
| C27 |
C28 |
H29 |
H28 |
240.4 |
120.6 |
| O26 |
C27 |
H30 |
H31 |
118.7 |
239.9 |
| H30 |
C27 |
C28 |
H28 |
330.5 |
52.5 |
| H30 |
C27 |
C28 |
H29 |
90.3 |
291.9 |
| O26 |
C27 |
H31 |
H30 |
241.3 |
120.1 |
| H31 |
C27 |
C28 |
H28 |
211.4 |
172.6 |
| H31 |
C27 |
C28 |
H29 |
331.2 |
52.0 |
| C24 |
C25 |
H32 |
H33 |
242.1 |
240.0 |
| H32 |
C25 |
C24 |
H34 |
329.8 |
68.0 |
| H32 |
C25 |
C24 |
H35 |
90.0 |
307.4 |
| C24 |
C25 |
H33 |
H32 |
117.9 |
120.1 |
| H33 |
C25 |
C24 |
H34 |
211.1 |
307.9 |
| H33 |
C25 |
C24 |
H35 |
331.3 |
187.3 |
| H34 |
C24 |
C25 |
H32 |
329.8 |
68.0 |
| H34 |
C24 |
C25 |
H33 |
211.1 |
307.9 |
| C25 |
C24 |
H34 |
H35 |
120.3 |
239.4 |
| H35 |
C24 |
C25 |
H32 |
90.0 |
307.4 |
| H35 |
C24 |
C25 |
H33 |
331.3 |
187.3 |
| C25 |
C24 |
H35 |
H34 |
239.7 |
120.6 |