Atom Nomenclature for 9M0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9M0

Atom Name (V3) Atom Name (V2)
C4 C1
C5 C2
C6 C3
C8 C4
C9 C5
C10 C6
C11 C7
C13 C8
O7 O1
C15 C9
C1 C10
C2 C11
C3 C12
N12 N1
O14 O2
C16 C13
C17 C14
C18 C15
C19 C16
C20 C17
C21 C18
C22 C19
O23 O3
C24 C20
O25 O4
S26 S1
C27 C21
C28 C22
N29 N2
F30 F1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13