Atom Nomenclature for 9LX

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9LX

Atom Name (V3) Atom Name (V2)
C10 C1
C11 C2
C12 C3
C13 C4
C14 C5
C15 C6
C16 C7
C19 C8
C20 C9
C21 C10
C22 C11
C24 C12
C26 C13
C27 C14
C01 C15
O02 O1
C03 C16
C04 C17
C05 C18
C06 C19
C07 C20
N08 N1
C09 C21
O17 O2
N18 N2
F23 F1
N25 N3
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18