Atom Nomenclature for 9LT

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9LT

Atom Name (V3) Atom Name (V2)
CAA C1
CAB C2
CAG C3
CAH C4
CAI C5
CAJ C6
CAK C7
CAL C8
CAM C9
CAN C10
CAO C11
CAP C12
CAT C13
CAU C14
CAV C15
CAW C16
CAX C17
CAY C18
CAZ C19
CBA C20
CBB C21
CBC C22
FAF F1
NAQ N1
NAR N2
NAS N3
NBD N4
NBE N5
OAC O1
OAD O2
OAE O3
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20