PDB Chemical Component 9LQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9LQ
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C10 |
C9 |
1.525 |
1.544 |
C10 |
C11 |
1.522 |
1.549 |
C9 |
N1 |
1.478 |
1.436 |
C11 |
N2 |
1.465 |
1.440 |
O3 |
S |
1.431 |
1.421 |
N1 |
S |
1.637 |
1.656 |
N1 |
C20 |
1.474 |
1.502 |
N2 |
C12 |
1.472 |
1.469 |
N2 |
C19 |
1.463 |
1.461 |
O2 |
B |
1.360 |
1.420 |
C12 |
C13 |
1.510 |
1.507 |
S |
C |
1.763 |
1.761 |
S |
O |
1.428 |
1.421 |
O1 |
B |
1.366 |
1.420 |
B |
C18 |
1.581 |
1.570 |
C20 |
C19 |
1.445 |
1.468 |
C1 |
C |
1.368 |
1.363 |
C1 |
C2 |
1.384 |
1.394 |
C |
C5 |
1.425 |
1.403 |
C2 |
C3 |
1.363 |
1.361 |
C5 |
C6 |
1.412 |
1.406 |
C5 |
C4 |
1.417 |
1.420 |
C3 |
C4 |
1.415 |
1.404 |
C6 |
C7 |
1.359 |
1.363 |
C4 |
C8 |
1.410 |
1.404 |
C13 |
C18 |
1.413 |
1.394 |
C13 |
C14 |
1.397 |
1.380 |
C7 |
N |
1.343 |
1.326 |
C18 |
C17 |
1.401 |
1.394 |
C8 |
N |
1.321 |
1.312 |
C14 |
C15 |
1.381 |
1.383 |
C17 |
C16 |
1.382 |
1.380 |
C15 |
C16 |
1.373 |
1.385 |
C1 |
H |
1.080 |
1.080 |
C2 |
H1 |
1.080 |
1.080 |
C3 |
H2 |
1.080 |
1.080 |
C6 |
H3 |
1.080 |
1.080 |
O2 |
H19 |
0.950 |
0.967 |
C7 |
H4 |
1.080 |
1.080 |
C8 |
H5 |
1.080 |
1.080 |
C20 |
H22 |
1.099 |
1.090 |
C20 |
H23 |
1.100 |
1.090 |
C19 |
H20 |
1.100 |
1.090 |
C19 |
H21 |
1.100 |
1.090 |
C11 |
H11 |
1.100 |
1.090 |
C11 |
H10 |
1.100 |
1.090 |
C10 |
H8 |
1.100 |
1.090 |
C10 |
H9 |
1.100 |
1.091 |
C9 |
H7 |
1.100 |
1.090 |
C9 |
H6 |
1.100 |
1.091 |
C12 |
H13 |
1.100 |
1.090 |
C12 |
H12 |
1.101 |
1.090 |
O1 |
H18 |
0.950 |
0.967 |
C17 |
H17 |
1.080 |
1.080 |
C16 |
H16 |
1.080 |
1.080 |
C15 |
H15 |
1.080 |
1.080 |
C14 |
H14 |
1.080 |
1.080 |
Bond Angles for 9LQ
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C9 |
C10 |
H8 |
108.3 |
109.5 |
C9 |
C10 |
H9 |
108.2 |
109.4 |
C10 |
C9 |
H7 |
108.4 |
108.1 |
C10 |
C9 |
H6 |
108.5 |
108.1 |
C10 |
C11 |
H11 |
107.5 |
109.3 |
C10 |
C11 |
H10 |
107.5 |
109.2 |
C11 |
N2 |
C12 |
116.0 |
111.0 |
N1 |
C20 |
C19 |
111.1 |
106.9 |
N1 |
C20 |
H22 |
109.1 |
110.0 |
N1 |
C20 |
H23 |
109.0 |
110.0 |
N2 |
C12 |
C13 |
113.5 |
109.5 |
N2 |
C12 |
H13 |
108.5 |
109.5 |
N2 |
C12 |
H12 |
108.5 |
109.5 |
N2 |
C19 |
H20 |
108.2 |
108.5 |
N2 |
C19 |
H21 |
108.1 |
108.4 |
O2 |
B |
C18 |
117.4 |
120.0 |
B |
O2 |
H19 |
109.5 |
114.0 |
C12 |
C13 |
C18 |
122.4 |
120.0 |
C12 |
C13 |
C14 |
118.0 |
120.1 |
C13 |
C12 |
H13 |
108.5 |
109.5 |
C13 |
C12 |
H12 |
108.5 |
109.5 |
B |
C18 |
C17 |
116.7 |
120.1 |
C19 |
C20 |
H22 |
109.1 |
110.0 |
C19 |
C20 |
H23 |
109.0 |
110.0 |
C20 |
C19 |
H20 |
108.1 |
108.5 |
C20 |
C19 |
H21 |
108.1 |
108.5 |
C2 |
C1 |
C |
120.4 |
121.0 |
C1 |
C |
C5 |
121.2 |
119.4 |
C |
C1 |
H |
119.9 |
119.4 |
C1 |
C2 |
C3 |
120.7 |
121.1 |
C2 |
C1 |
H |
119.8 |
119.5 |
C1 |
C2 |
H1 |
119.7 |
119.4 |
C2 |
C3 |
C4 |
120.7 |
119.5 |
C3 |
C2 |
H1 |
119.7 |
119.5 |
C2 |
C3 |
H2 |
119.6 |
120.3 |
C5 |
C6 |
C7 |
119.2 |
118.6 |
C5 |
C6 |
H3 |
120.4 |
120.7 |
C5 |
C4 |
C8 |
117.2 |
118.6 |
C3 |
C4 |
C8 |
123.4 |
122.1 |
C4 |
C3 |
H2 |
119.6 |
120.2 |
C6 |
C7 |
N |
124.1 |
121.9 |
C7 |
C6 |
H3 |
120.4 |
120.7 |
C6 |
C7 |
H4 |
117.9 |
119.0 |
C4 |
C8 |
N |
124.2 |
119.9 |
C4 |
C8 |
H5 |
117.9 |
120.1 |
C18 |
C13 |
C14 |
119.6 |
119.9 |
C13 |
C18 |
C17 |
117.7 |
119.8 |
C13 |
C14 |
C15 |
120.9 |
120.1 |
C13 |
C14 |
H14 |
119.6 |
119.9 |
C18 |
C17 |
C16 |
121.7 |
119.8 |
C18 |
C17 |
H17 |
119.2 |
120.1 |
C14 |
C15 |
H15 |
120.0 |
119.9 |
C16 |
C17 |
H17 |
119.2 |
120.1 |
C17 |
C16 |
H16 |
120.0 |
119.9 |
C15 |
C16 |
H16 |
119.9 |
119.9 |
H22 |
C20 |
H23 |
109.5 |
110.0 |
H20 |
C19 |
H21 |
109.5 |
108.4 |
H11 |
C11 |
H10 |
109.5 |
109.3 |
H8 |
C10 |
H9 |
109.5 |
109.4 |
H7 |
C9 |
H6 |
109.5 |
107.8 |
H13 |
C12 |
H12 |
109.5 |
109.5 |
Torsion Angles for 9LQ
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C9 |
C10 |
C11 |
H11 |
37.7 |
201.2 |
C9 |
C10 |
C11 |
H10 |
155.4 |
81.7 |
H8 |
C10 |
C9 |
H9 |
241.4 |
119.8 |
H7 |
C9 |
C10 |
H6 |
241.2 |
116.4 |
C10 |
C11 |
N2 |
C12 |
211.0 |
220.7 |
H11 |
C11 |
C10 |
H10 |
242.3 |
119.5 |
C9 |
N1 |
C20 |
H22 |
27.0 |
51.4 |
C9 |
N1 |
C20 |
H23 |
146.5 |
172.6 |
C11 |
N2 |
C12 |
C13 |
179.1 |
72.3 |
C11 |
N2 |
C12 |
H13 |
299.7 |
192.2 |
C11 |
N2 |
C12 |
H12 |
58.5 |
312.2 |
C11 |
N2 |
C19 |
H20 |
65.4 |
146.4 |
C11 |
N2 |
C19 |
H21 |
183.8 |
28.9 |
C19 |
C20 |
N1 |
H22 |
239.7 |
240.6 |
C19 |
C20 |
N1 |
H23 |
120.2 |
119.4 |
N1 |
C20 |
C19 |
H20 |
315.4 |
179.3 |
N1 |
C20 |
C19 |
H21 |
197.0 |
296.9 |
H22 |
C20 |
N1 |
H23 |
240.5 |
238.8 |
C12 |
N2 |
C19 |
H20 |
285.0 |
25.7 |
C12 |
N2 |
C19 |
H21 |
43.5 |
268.2 |
N2 |
C12 |
C13 |
C18 |
287.1 |
80.0 |
N2 |
C12 |
C13 |
C14 |
106.2 |
259.7 |
C13 |
C12 |
N2 |
H13 |
239.4 |
240.0 |
C13 |
C12 |
N2 |
H12 |
120.6 |
120.0 |
H13 |
C12 |
N2 |
H12 |
241.2 |
240.0 |
N2 |
C19 |
C20 |
H22 |
315.9 |
298.6 |
N2 |
C19 |
C20 |
H23 |
196.4 |
177.4 |
C20 |
C19 |
N2 |
H20 |
239.2 |
121.3 |
C20 |
C19 |
N2 |
H21 |
120.8 |
238.8 |
H20 |
C19 |
N2 |
H21 |
241.6 |
117.5 |
O2 |
B |
C18 |
C17 |
220.6 |
180.0 |
N2 |
C12 |
C13 |
H13 |
120.6 |
120.0 |
N2 |
C12 |
C13 |
H12 |
239.4 |
240.0 |
C18 |
C13 |
C12 |
C14 |
180.9 |
180.3 |
C12 |
C13 |
C18 |
C17 |
180.4 |
180.0 |
C12 |
C13 |
C14 |
C15 |
181.1 |
179.7 |
C12 |
C13 |
C14 |
H14 |
1.1 |
0.0 |
H13 |
C12 |
C13 |
H12 |
118.8 |
120.0 |
S |
C |
C1 |
H |
355.9 |
0.2 |
O1 |
B |
O2 |
H19 |
180.0 |
359.9 |
O1 |
B |
C18 |
C17 |
37.8 |
360.0 |
C18 |
B |
O2 |
H19 |
357.3 |
179.9 |
B |
C18 |
C13 |
C14 |
186.1 |
180.3 |
C13 |
C18 |
B |
C17 |
175.3 |
180.0 |
B |
C18 |
C17 |
C16 |
173.8 |
180.0 |
B |
C18 |
C17 |
H17 |
353.8 |
0.0 |
N1 |
C20 |
C19 |
H22 |
120.3 |
119.4 |
N1 |
C20 |
C19 |
H23 |
239.8 |
240.6 |
N2 |
C19 |
C20 |
H20 |
120.8 |
238.7 |
N2 |
C19 |
C20 |
H21 |
239.2 |
121.1 |
H22 |
C20 |
C19 |
H23 |
119.5 |
121.3 |
H20 |
C19 |
C20 |
H21 |
118.4 |
242.4 |
C |
C1 |
C2 |
C3 |
359.1 |
360.0 |
C2 |
C1 |
C |
H |
180.0 |
179.8 |
C |
C1 |
C2 |
H1 |
179.2 |
179.9 |
C2 |
C1 |
C |
C5 |
359.1 |
0.1 |
C |
C1 |
C2 |
H |
180.0 |
180.2 |
C1 |
C2 |
C3 |
C4 |
1.1 |
360.0 |
C3 |
C2 |
C1 |
H1 |
180.0 |
180.1 |
C1 |
C2 |
C3 |
H2 |
181.1 |
180.0 |
C5 |
C |
C1 |
H |
179.1 |
180.3 |
C |
C5 |
C6 |
C7 |
186.0 |
180.0 |
C |
C5 |
C6 |
H3 |
6.1 |
359.9 |
C |
C5 |
C4 |
C8 |
174.0 |
180.0 |
C3 |
C2 |
C1 |
C |
359.1 |
360.0 |
C3 |
C2 |
C1 |
H |
179.1 |
179.8 |
C1 |
C2 |
C3 |
H1 |
180.0 |
179.9 |
C2 |
C3 |
C4 |
C8 |
184.6 |
180.0 |
C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
C1 |
C |
C5 |
C6 |
177.7 |
180.0 |
C6 |
C5 |
C4 |
C8 |
358.4 |
359.9 |
C5 |
C6 |
C7 |
N |
359.7 |
359.9 |
C7 |
C6 |
C5 |
H3 |
180.0 |
180.1 |
C5 |
C6 |
C7 |
H4 |
179.7 |
179.9 |
C1 |
C |
C5 |
C4 |
2.3 |
359.9 |
C3 |
C4 |
C5 |
C8 |
183.9 |
180.0 |
C5 |
C4 |
C3 |
H2 |
180.4 |
180.0 |
C5 |
C4 |
C8 |
N |
0.9 |
0.1 |
C5 |
C4 |
C8 |
H5 |
180.9 |
180.0 |
C4 |
C3 |
C2 |
H1 |
181.1 |
180.1 |
C2 |
C3 |
C4 |
H2 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
C8 |
175.9 |
180.0 |
C3 |
C4 |
C8 |
N |
176.8 |
180.0 |
C3 |
C4 |
C8 |
H5 |
356.8 |
360.0 |
C5 |
C6 |
C7 |
H3 |
180.0 |
179.9 |
C8 |
C4 |
C3 |
H2 |
4.6 |
0.0 |
O2 |
B |
C18 |
C13 |
35.9 |
0.0 |
C12 |
C13 |
C18 |
C14 |
179.1 |
179.7 |
C18 |
C13 |
C12 |
H13 |
166.6 |
320.0 |
C18 |
C13 |
C12 |
H12 |
47.7 |
200.0 |
B |
C18 |
C13 |
C17 |
184.7 |
180.0 |
C18 |
C13 |
C14 |
C15 |
0.2 |
359.4 |
C18 |
C13 |
C14 |
H14 |
180.2 |
179.7 |
C13 |
C18 |
C17 |
C16 |
358.1 |
360.0 |
C13 |
C18 |
C17 |
H17 |
178.1 |
180.0 |
C12 |
C13 |
C14 |
C18 |
180.9 |
180.3 |
C14 |
C13 |
C12 |
H13 |
345.6 |
139.7 |
C14 |
C13 |
C12 |
H12 |
226.8 |
19.7 |
C14 |
C13 |
C18 |
C17 |
1.4 |
0.3 |
C13 |
C14 |
C15 |
H15 |
178.8 |
180.3 |
N |
C7 |
C6 |
H3 |
179.7 |
180.0 |
C6 |
C7 |
N |
H4 |
180.0 |
180.0 |
C4 |
C8 |
N |
C7 |
0.2 |
360.0 |
C17 |
C18 |
C13 |
C14 |
1.4 |
0.3 |
C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
C18 |
C17 |
C16 |
H16 |
180.9 |
180.0 |
C4 |
C8 |
N |
H5 |
180.0 |
180.0 |
C13 |
C14 |
C15 |
H14 |
180.0 |
180.3 |
C14 |
C15 |
C16 |
H16 |
180.7 |
179.7 |
C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
C13 |
C14 |
C15 |
C16 |
358.8 |
0.5 |
C15 |
C16 |
C17 |
H17 |
180.9 |
180.0 |
C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
C2 |
C1 |
H |
C |
180.0 |
180.2 |
H |
C1 |
C |
C5 |
179.1 |
180.3 |
H |
C1 |
C2 |
C3 |
179.1 |
179.8 |
H |
C1 |
C2 |
H1 |
359.1 |
359.7 |
H1 |
C2 |
C1 |
C |
179.2 |
179.9 |
C1 |
C2 |
H1 |
C3 |
180.0 |
180.1 |
H1 |
C2 |
C1 |
H |
359.1 |
359.7 |
H1 |
C2 |
C3 |
C4 |
181.1 |
180.1 |
H1 |
C2 |
C3 |
H2 |
1.1 |
0.1 |
C2 |
C3 |
H2 |
C4 |
180.0 |
180.0 |
H2 |
C3 |
C2 |
H1 |
1.1 |
0.1 |
H2 |
C3 |
C4 |
C8 |
4.6 |
0.0 |
C5 |
C6 |
H3 |
C7 |
180.0 |
180.1 |
H3 |
C6 |
C7 |
N |
179.7 |
180.0 |
H3 |
C6 |
C7 |
H4 |
359.7 |
360.0 |
H19 |
O2 |
B |
C18 |
357.3 |
179.9 |
C6 |
C7 |
H4 |
N |
180.0 |
180.0 |
H4 |
C7 |
C6 |
H3 |
359.7 |
360.0 |
C4 |
C8 |
H5 |
N |
180.0 |
180.0 |
N1 |
C20 |
H22 |
C19 |
238.5 |
242.5 |
N1 |
C20 |
H22 |
H23 |
119.2 |
121.2 |
C19 |
C20 |
H22 |
H23 |
240.8 |
238.7 |
H22 |
C20 |
C19 |
H20 |
195.1 |
59.9 |
H22 |
C20 |
C19 |
H21 |
76.7 |
177.5 |
N1 |
C20 |
H23 |
C19 |
121.5 |
117.5 |
N1 |
C20 |
H23 |
H22 |
240.8 |
238.7 |
C19 |
C20 |
H23 |
H22 |
119.2 |
121.3 |
H23 |
C20 |
C19 |
H20 |
75.6 |
298.6 |
H23 |
C20 |
C19 |
H21 |
317.2 |
56.3 |
N2 |
C19 |
H20 |
H21 |
117.6 |
242.5 |
H20 |
C19 |
C20 |
H22 |
195.1 |
59.9 |
H20 |
C19 |
C20 |
H23 |
75.6 |
298.6 |
C20 |
C19 |
H20 |
H21 |
242.5 |
117.7 |
N2 |
C19 |
H21 |
H20 |
242.4 |
117.6 |
H21 |
C19 |
C20 |
H22 |
76.7 |
177.5 |
H21 |
C19 |
C20 |
H23 |
317.2 |
56.3 |
C20 |
C19 |
H21 |
H20 |
117.5 |
242.3 |
C10 |
C11 |
H11 |
H10 |
116.4 |
240.5 |
H11 |
C11 |
N2 |
C12 |
89.9 |
341.0 |
C10 |
C11 |
H10 |
H11 |
243.6 |
119.6 |
H10 |
C11 |
N2 |
C12 |
332.2 |
100.6 |
C9 |
C10 |
H8 |
H9 |
117.8 |
240.1 |
H8 |
C10 |
C9 |
H7 |
275.9 |
76.9 |
H8 |
C10 |
C9 |
H6 |
34.8 |
320.4 |
H8 |
C10 |
C11 |
H11 |
277.0 |
321.3 |
H8 |
C10 |
C11 |
H10 |
34.7 |
201.8 |
C9 |
C10 |
H9 |
H8 |
242.2 |
119.9 |
H9 |
C10 |
C9 |
H7 |
34.5 |
317.0 |
H9 |
C10 |
C9 |
H6 |
153.3 |
200.6 |
H9 |
C10 |
C11 |
H11 |
158.4 |
81.2 |
H9 |
C10 |
C11 |
H10 |
276.1 |
321.7 |
H7 |
C9 |
C10 |
H8 |
275.9 |
76.9 |
H7 |
C9 |
C10 |
H9 |
34.5 |
317.0 |
C10 |
C9 |
H7 |
H6 |
118.2 |
243.3 |
H6 |
C9 |
C10 |
H8 |
34.8 |
320.4 |
H6 |
C9 |
C10 |
H9 |
153.3 |
200.6 |
C10 |
C9 |
H6 |
H7 |
241.8 |
116.7 |
N2 |
C12 |
H13 |
C13 |
236.3 |
240.0 |
N2 |
C12 |
H13 |
H12 |
118.2 |
120.0 |
H13 |
C12 |
C13 |
C18 |
166.6 |
320.0 |
H13 |
C12 |
C13 |
C14 |
345.6 |
139.7 |
C13 |
C12 |
H13 |
H12 |
241.8 |
240.0 |
N2 |
C12 |
H12 |
C13 |
123.7 |
120.0 |
N2 |
C12 |
H12 |
H13 |
241.8 |
240.0 |
H12 |
C12 |
C13 |
C18 |
47.7 |
200.0 |
H12 |
C12 |
C13 |
C14 |
226.8 |
19.7 |
C13 |
C12 |
H12 |
H13 |
118.2 |
120.0 |
C18 |
C17 |
H17 |
C16 |
180.0 |
180.0 |
H17 |
C17 |
C16 |
H16 |
0.9 |
360.0 |
H16 |
C16 |
C17 |
H17 |
0.9 |
360.0 |
H15 |
C15 |
C16 |
H16 |
0.7 |
360.0 |
C13 |
C14 |
H14 |
C15 |
180.0 |
179.7 |
H14 |
C14 |
C15 |
H15 |
358.8 |
360.0 |