Atom Nomenclature for 9LG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9LG

Atom Name (V3) Atom Name (V2)
C4 C1
C6 C2
C7 C3
C8 C4
C10 C5
C13 C6
C15 C7
C17 C8
C21 C9
C22 C10
C24 C11
C26 C12
C28 C13
F20 F1
C16 C14
C30 C15
C29 C16
S1 S1
O11 O1
O12 O2
N5 N1
O18 O3
N14 N2
C19 C17
C23 C18
C27 C19
C33 C20
C35 C21
C34 C22
N2 N3
C25 C23
C31 C24
C36 C25
C32 C26
C3 C27
C9 C28
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26