PDB Chemical Component 9KD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9KD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C6	C5	1.408	1.382
C6	C1	1.407	1.383
C5	C4	1.407	1.382
C1	C2	1.416	1.385
O3	C9	1.229	1.216
C4	C3	1.408	1.386
C2	C3	1.412	1.392
C2	O2	1.376	1.360
C7	O2	1.421	1.429
C7	C8	1.533	1.529
C3	O1	1.370	1.360
C8	N1	1.444	1.466
C9	N1	1.414	1.345
C9	N2	1.388	1.346
N1	C12	1.386	1.368
N2	C10	1.391	1.349
O1	C13	1.373	1.358
C13	C18	1.410	1.397
C13	C14	1.410	1.378
C12	C11	1.354	1.350
C10	O4	1.227	1.218
C10	C11	1.458	1.416
C18	C17	1.414	1.377
C24	C14	1.521	1.507
C14	C15	1.412	1.406
C17	N3	1.426	1.395
C17	C16	1.421	1.412
N3	C25	1.345	1.348
C26	C25	1.450	1.470
C26	C27	1.344	1.330
C25	O5	1.229	1.217
C15	C16	1.423	1.418
C15	C19	1.415	1.404
C16	C22	1.416	1.405
C19	C20	1.404	1.386
C22	C21	1.407	1.358
C20	C21	1.406	1.407
C20	C23	1.454	1.432
C23	N4	1.155	1.135
C1	H1	1.080	1.080
C4	H2	1.080	1.080
C7	H3	1.099	1.090
C7	H4	1.100	1.090
C11	H5	1.080	1.080
C19	H6	1.080	1.080
C21	H7	1.080	1.080
C22	H8	1.080	1.080
C24	H9	1.100	1.089
C24	H10	1.101	1.090
C24	H11	1.100	1.090
C26	H12	1.080	1.080
C27	H13	1.080	1.080
C27	H14	1.080	1.080
C5	H15	1.080	1.080
C6	H16	1.080	1.081
C8	H17	1.101	1.090
C8	H18	1.100	1.090
N2	H19	1.000	0.971
C12	H20	1.080	1.080
C18	H21	1.080	1.079
N3	H22	1.000	0.971

Bond Angles for 9KD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C6	C5	H15	120.1	119.9
C6	C1	H1	119.8	120.0
C5	C4	H2	119.9	120.0
C1	C2	C3	119.1	119.9
C1	C2	O2	123.5	120.1
C2	C1	H1	119.8	120.0
C2	C3	C4	120.4	119.9
C4	C3	O1	119.4	120.0
C3	C4	H2	119.9	120.0
C3	C2	O2	117.4	120.1
C2	C3	O1	120.1	120.1
C2	O2	C7	116.9	117.0
O2	C7	C8	108.3	109.5
O2	C7	H3	109.7	109.5
O2	C7	H4	109.8	109.5
C7	C8	N1	113.4	109.5
C8	C7	H3	109.7	109.5
C8	C7	H4	109.8	109.5
C7	C8	H17	108.5	109.5
C7	C8	H18	108.5	109.5
C9	N1	C8	117.9	119.7
C8	N1	C12	122.5	119.7
N1	C8	H17	108.5	109.4
N1	C8	H18	108.5	109.5
N1	C9	N2	116.8	120.9
C9	N1	C12	119.6	120.6
C9	N2	C10	125.6	120.3
C9	N2	H19	117.2	119.9
N1	C12	H20	118.5	120.2
N2	C10	O4	119.9	120.3
C10	N2	H19	117.2	119.9
O1	C13	C18	122.3	119.7
C14	C13	C18	119.7	120.8
C13	C18	C17	120.7	120.7
C13	C18	H21	119.7	119.6
C13	C14	C15	120.4	119.8
C12	C11	H5	120.0	120.5
C10	C11	H5	120.0	120.4
C18	C17	N3	121.4	120.1
C14	C15	C16	119.8	119.6
C14	C15	C19	120.2	120.9
C17	N3	C25	125.8	120.0
C17	N3	H22	117.1	120.0
C17	C16	C22	121.3	120.9
C27	C26	H12	120.7	120.0
C26	C27	H13	120.0	120.0
C26	C27	H14	120.0	120.0
C16	C15	C19	119.9	119.5
C15	C16	C22	118.8	119.7
C15	C19	C20	120.6	119.4
C15	C19	H6	119.7	120.2
C16	C22	C21	120.6	120.1
C16	C22	H8	119.7	120.0
C19	C20	C21	119.6	120.5
C19	C20	C23	120.2	119.7
C20	C19	H6	119.7	120.3
C22	C21	H7	119.8	119.6
C20	C21	H7	119.8	119.6
C20	C23	N4	179.9	179.9
H3	C7	H4	109.5	109.4
H9	C24	H10	109.5	109.5
H9	C24	H11	109.5	109.5
H10	C24	H11	109.5	109.5
H13	C27	H14	120.0	120.0
H17	C8	H18	109.5	109.5

Torsion Angles for 9KD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C6	C1	H1	180.1	180.3
C6	C5	C4	H2	179.6	180.3
C6	C1	C2	O2	180.0	180.2
C2	C1	C6	H1	180.0	179.7
C5	C4	C3	O1	179.5	179.4
C3	C4	C5	H2	180.0	180.6
C6	C1	C2	H1	180.0	180.3
C1	C2	C3	C4	359.3	360.0
C3	C2	C1	O2	180.3	180.1
C1	C2	C3	O1	180.6	180.0
C1	C2	O2	C7	15.9	0.0
O3	C9	N2	H19	359.9	0.3
C5	C4	C3	H2	180.0	179.4
C4	C3	C2	O2	179.6	180.0
C2	C3	C4	O1	181.3	180.0
C1	C2	C3	O2	179.7	179.9
C3	C2	C1	H1	180.2	180.0
C4	C3	C2	O1	178.7	180.0
C2	C3	C4	H2	180.8	180.0
C3	C2	O2	C7	195.6	179.9
C1	C2	O2	C3	180.3	180.1
O2	C2	C1	H1	359.9	359.9
O2	C2	C3	C4	179.6	180.0
O2	C2	C3	O1	0.9	0.0
C2	O2	C7	C8	173.8	180.0
C2	O2	C7	H3	293.6	300.0
C2	O2	C7	H4	53.9	59.9
O2	C7	C8	N1	312.1	65.0
C8	C7	O2	H3	240.2	240.0
C8	C7	O2	H4	119.8	120.0
O2	C7	C8	H17	72.7	185.0
O2	C7	C8	H18	191.5	305.0
H3	C7	O2	H4	239.7	240.0
O2	C7	C8	H3	119.8	120.0
O2	C7	C8	H4	240.2	240.0
C9	N1	C8	C7	279.2	90.0
C7	C8	N1	C12	99.7	270.0
N1	C8	C7	H17	239.4	240.1
N1	C8	C7	H18	120.6	120.0
H3	C7	C8	H4	120.3	120.0
H17	C8	C7	H18	241.1	239.9
C2	C3	O1	C4	178.7	180.0
O1	C3	C4	H2	359.5	0.0
O1	C3	C2	O2	0.9	0.0
C3	O1	C13	C18	22.6	261.4
N1	C8	C7	H3	192.3	305.0
N1	C8	C7	H4	71.9	185.0
C7	C8	N1	H17	120.6	120.0
C7	C8	N1	H18	239.4	240.0
C8	N1	C9	N2	180.2	180.0
C9	N1	C8	C12	179.6	179.9
C8	N1	C12	H20	359.8	360.0
H17	C8	N1	H18	118.9	120.0
C7	C8	N1	C9	279.2	90.0
C8	N1	C9	C12	180.4	180.1
C9	N1	C8	H17	158.7	330.0
C9	N1	C8	H18	39.8	210.0
N1	C9	N2	C10	0.1	0.0
N1	C9	N2	H19	180.1	180.0
C9	N1	C12	H20	180.2	180.0
N2	C9	N1	C8	180.2	180.0
N2	C9	N1	C12	359.8	360.0
C9	N2	C10	O4	180.0	180.0
C10	N2	C9	H19	180.0	180.0
C9	N1	C12	C8	180.4	180.1
C12	N1	C8	H17	339.1	150.0
C12	N1	C8	H18	220.2	30.0
C12	N1	C9	N2	359.8	360.0
N1	C12	C11	H5	179.9	180.0
C9	N2	C10	H19	180.0	180.0
N2	C10	C11	H5	180.0	180.0
C4	C3	O1	C13	86.2	355.3
C2	C3	O1	C13	265.0	175.3
C14	C13	O1	C18	179.5	179.7
O1	C13	C18	C17	180.1	179.8
O1	C13	C18	H21	0.1	359.7
C18	C13	C14	C15	359.7	359.9
C13	C18	C17	N3	180.4	180.0
O1	C13	C14	C18	180.4	180.3
C14	C13	C18	C17	0.5	0.1
C14	C13	C18	H21	180.5	179.9
C13	C14	C15	C16	0.2	0.0
C13	C14	C15	C19	180.2	180.0
C9	N1	C12	C11	0.2	0.0
C10	C11	C12	H5	180.0	180.0
O4	C10	N2	H19	360.0	360.0
O4	C10	C11	H5	0.1	0.0
C9	N2	C10	C11	0.0	0.0
C12	C11	C10	H5	180.0	180.0
C13	C18	C17	H21	180.0	179.9
C18	C17	N3	C25	103.7	33.8
C18	C17	N3	H22	283.7	213.9
C24	C14	C13	C18	180.0	180.0
C15	C14	C13	C18	359.7	359.9
C16	C15	C14	C19	180.0	180.0
C14	C15	C16	C22	180.0	179.9
C14	C15	C19	C20	180.0	180.1
C14	C15	C19	H6	0.0	360.0
N3	C17	C16	C22	359.1	0.1
C13	C18	C17	C16	359.4	360.0
C17	C16	C15	C19	179.6	180.0
C15	C16	C17	C22	180.4	179.9
C17	C16	C22	C21	180.3	179.9
C17	C16	C22	H8	0.3	359.9
C17	N3	C25	H22	180.0	180.0
C17	N3	C25	C26	179.8	185.9
H13	C27	C26	H14	180.0	180.1
C14	C15	C16	C19	180.0	180.0
C17	C16	C15	C22	179.6	180.1
C16	C15	C19	C20	0.0	0.0
C16	C15	C19	H6	180.0	180.0
C15	C16	C22	C21	359.9	0.0
C15	C16	C22	H8	180.0	180.0
C14	C15	C19	C16	180.0	180.0
C19	C15	C16	C22	0.0	359.9
C15	C19	C20	C21	359.9	0.1
C15	C19	C20	C23	180.0	180.0
C20	C19	C15	H6	180.0	180.1
C22	C16	C15	C19	0.0	359.9
C16	C22	C21	H7	180.1	180.0
C15	C19	C20	H6	180.0	179.9
C19	C20	C21	H7	180.0	180.0
C19	C20	C23	N4	240.2	161.3
C16	C22	C21	H8	180.0	179.9
C19	C20	C21	C22	0.0	359.9
C20	C21	C22	H7	180.0	180.1
C19	C20	C21	C23	180.1	179.9
C21	C20	C19	H6	180.0	180.1
C22	C21	C20	H7	180.0	179.9
C19	C20	C23	C21	179.9	180.1
C23	C20	C19	H6	0.0	0.0
C23	C20	C21	H7	359.9	0.1
H1	C1	C2	C3	180.2	180.0
H1	C1	C2	O2	359.9	359.9
H2	C4	C3	O1	359.5	0.0
O2	C7	H3	C8	241.0	240.0
O2	C7	H3	H4	120.5	120.0
H3	C7	C8	N1	192.3	305.0
C8	C7	H3	H4	239.5	240.0
H3	C7	C8	H17	312.9	64.9
H3	C7	C8	H18	71.7	185.0
O2	C7	H4	C8	119.0	120.0
O2	C7	H4	H3	239.5	240.0
H4	C7	C8	N1	71.9	185.0
C8	C7	H4	H3	120.5	120.0
H4	C7	C8	H17	192.5	305.0
H4	C7	C8	H18	311.4	65.0
C15	C19	H6	C20	180.0	180.1
H6	C19	C20	C21	180.0	180.1
H6	C19	C20	C23	0.0	0.0
C16	C22	H8	C21	180.0	180.1
H8	C22	C21	H7	0.1	0.0
H10	C24	H9	H11	120.0	120.0
H9	C24	H10	H11	240.0	240.0
H9	C24	H11	H10	120.0	120.0
H12	C26	C27	H13	0.0	0.0
H12	C26	C27	H14	180.0	180.0
H13	C27	C26	H12	0.0	0.0
C26	C27	H13	H14	180.0	179.9
H14	C27	C26	H12	180.0	180.0
C26	C27	H14	H13	180.0	180.1
H15	C5	C4	H2	359.5	359.4
H16	C6	C5	H15	360.0	0.9
H16	C6	C1	H1	0.1	359.7
C7	C8	H17	N1	236.4	240.0
H17	C8	C7	H3	312.9	64.9
H17	C8	C7	H4	192.5	305.0
C7	C8	H17	H18	118.2	120.1
H17	C8	N1	C12	339.1	150.0
N1	C8	H17	H18	241.8	240.0
C7	C8	H18	N1	123.6	120.0
H18	C8	C7	H3	71.7	185.0
H18	C8	C7	H4	311.4	65.0
C7	C8	H18	H17	241.8	239.9
H18	C8	N1	C12	220.2	30.0
N1	C8	H18	H17	118.2	120.0
C9	N2	H19	C10	180.0	180.0
H19	N2	C10	O4	360.0	360.0
H20	C12	C11	H5	359.9	0.0
C13	C18	H21	C17	180.0	180.1
H21	C18	C17	N3	0.4	0.1
C17	N3	H22	C25	180.0	180.0