Atom Nomenclature for 9JZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9JZ

Atom Name (V3) Atom Name (V2)
O3 O3
C5 C5
C4 C4
C12 C12
C18 C18
C17 C17
C16 C16
C15 C15
C14 C14
N2 N2
C3 C3
O2 O2
C2 C2
C13 C13
N1 N1
C1 C1
N3 N3
C9 C9
C8 C8
C7 C7
C28 C28
C6 C6
C10 C10
O1 O1
N4 N4
C11 C11
C27 C27
C26 C26
C25 C25
C24 C24
C19 C19
C20 C20
N6 N6
C23 C23
C22 C22
C21 C21
N5 N5
H4 H4
H12 H12
H18 H18
H18A H18A
H17 H17
H17A H17A
H16 H16
H16A H16A
H15 H15
H15A H15A
H14 H14
H14A H14A
HN2 HN2
H2 H2
H13 H13
H13A H13A
H13B H13B
HN1 HN1
H1 H1
H1A H1A
H1B H1B
H9 H9
H9A H9A
H8 H8
H8A H8A
H7 H7
H28 H28
H28A H28A
H28B H28B
H6 H6
HN4 HN4
H27 H27
H26 H26
H25 H25
H24 H24
H23 H23
H22 H22
H21 H21