PDB Chemical Component 9JF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9JF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C01 |
C06 |
1.391 |
1.384 |
| C01 |
C02 |
1.395 |
1.383 |
| C06 |
C05 |
1.424 |
1.391 |
| C02 |
C03 |
1.391 |
1.384 |
| O01 |
C10 |
1.218 |
1.216 |
| C05 |
C10 |
1.431 |
1.480 |
| C05 |
C04 |
1.368 |
1.407 |
| C03 |
C04 |
1.423 |
1.391 |
| C10 |
C09 |
1.442 |
1.472 |
| C04 |
C07 |
1.433 |
1.478 |
| O03 |
C14 |
1.412 |
1.357 |
| C09 |
C14 |
1.432 |
1.397 |
| C09 |
C08 |
1.377 |
1.412 |
| C07 |
O02 |
1.215 |
1.216 |
| C07 |
C08 |
1.431 |
1.477 |
| C14 |
C13 |
1.397 |
1.394 |
| C08 |
C11 |
1.425 |
1.389 |
| C18 |
C19 |
1.386 |
1.381 |
| C18 |
C17 |
1.388 |
1.382 |
| C19 |
C |
1.392 |
1.387 |
| C13 |
O04 |
1.408 |
1.359 |
| C13 |
C12 |
1.412 |
1.391 |
| C17 |
C16 |
1.393 |
1.383 |
| C11 |
C12 |
1.398 |
1.393 |
| C |
O |
1.412 |
1.359 |
| C |
C15 |
1.399 |
1.388 |
| C12 |
N |
1.432 |
1.394 |
| C16 |
C15 |
1.394 |
1.381 |
| C15 |
S |
1.787 |
1.761 |
| N |
S |
1.662 |
1.657 |
| S |
O05 |
1.440 |
1.421 |
| S |
O06 |
1.449 |
1.421 |
| N |
H08 |
1.000 |
0.970 |
| O |
H |
0.950 |
0.967 |
| C01 |
H01 |
1.080 |
1.080 |
| C02 |
H02 |
1.080 |
1.080 |
| C03 |
H03 |
1.080 |
1.080 |
| C06 |
H04 |
1.080 |
1.080 |
| C11 |
H05 |
1.080 |
1.080 |
| O03 |
H06 |
0.950 |
0.967 |
| O04 |
H07 |
0.950 |
0.967 |
| C16 |
H09 |
1.080 |
1.080 |
| C17 |
H10 |
1.080 |
1.079 |
| C18 |
H11 |
1.080 |
1.081 |
| C19 |
H12 |
1.080 |
1.079 |
Bond Angles for 9JF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
C01 |
C06 |
119.8 |
120.5 |
| C01 |
C06 |
C05 |
120.4 |
119.8 |
| C06 |
C01 |
H01 |
120.1 |
119.8 |
| C01 |
C06 |
H04 |
119.8 |
120.1 |
| C01 |
C02 |
C03 |
120.0 |
120.5 |
| C02 |
C01 |
H01 |
120.1 |
119.7 |
| C01 |
C02 |
H02 |
120.0 |
119.8 |
| C06 |
C05 |
C10 |
120.1 |
120.6 |
| C02 |
C03 |
C04 |
120.2 |
119.8 |
| C03 |
C02 |
H02 |
120.0 |
119.8 |
| C02 |
C03 |
H03 |
119.9 |
120.1 |
| C05 |
C10 |
C09 |
119.9 |
119.3 |
| C05 |
C04 |
C07 |
120.0 |
119.6 |
| C03 |
C04 |
C07 |
120.1 |
120.6 |
| C04 |
C03 |
H03 |
119.9 |
120.1 |
| C10 |
C09 |
C14 |
121.1 |
120.6 |
| C04 |
C07 |
O02 |
119.4 |
120.4 |
| C04 |
C07 |
C08 |
120.2 |
119.2 |
| C09 |
C14 |
C13 |
120.4 |
119.8 |
| C09 |
C08 |
C11 |
120.3 |
119.9 |
| C08 |
C07 |
O02 |
120.4 |
120.4 |
| C07 |
C08 |
C11 |
119.8 |
120.5 |
| C14 |
C13 |
O04 |
118.3 |
119.9 |
| C08 |
C11 |
C12 |
120.8 |
120.0 |
| C08 |
C11 |
H05 |
119.6 |
120.0 |
| C19 |
C18 |
H11 |
120.4 |
119.9 |
| C18 |
C19 |
H12 |
119.7 |
120.1 |
| C18 |
C17 |
H10 |
119.8 |
120.0 |
| C13 |
O04 |
H07 |
109.5 |
114.0 |
| C17 |
C16 |
H09 |
119.7 |
120.0 |
| C12 |
C11 |
H05 |
119.6 |
120.0 |
| O |
C |
C15 |
120.6 |
120.0 |
| C |
O |
H |
109.5 |
114.0 |
| C |
C15 |
S |
120.0 |
120.1 |
| C12 |
N |
S |
120.3 |
120.0 |
| C12 |
N |
H08 |
106.7 |
120.0 |
| N |
S |
O05 |
110.8 |
106.4 |
| N |
S |
O06 |
111.5 |
106.4 |
| S |
N |
H08 |
106.7 |
120.0 |
| O05 |
S |
O06 |
100.2 |
123.2 |
Torsion Angles for 9JF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C06 |
C01 |
C02 |
C03 |
360.0 |
360.0 |
| C02 |
C01 |
C06 |
H01 |
180.0 |
179.7 |
| C06 |
C01 |
C02 |
H02 |
180.0 |
180.0 |
| C01 |
C06 |
C05 |
C10 |
180.1 |
180.0 |
| C02 |
C01 |
C06 |
C05 |
359.9 |
0.0 |
| C06 |
C01 |
C02 |
H01 |
180.0 |
180.3 |
| C02 |
C01 |
C06 |
H04 |
179.9 |
180.0 |
| C01 |
C02 |
C03 |
C04 |
0.1 |
0.0 |
| C03 |
C02 |
C01 |
H02 |
180.0 |
180.0 |
| C01 |
C02 |
C03 |
H03 |
180.1 |
180.0 |
| C05 |
C06 |
C01 |
H01 |
179.9 |
180.3 |
| C01 |
C06 |
C05 |
H04 |
180.0 |
180.0 |
| C06 |
C05 |
C10 |
C09 |
180.2 |
193.8 |
| C06 |
C05 |
C04 |
C07 |
179.6 |
179.9 |
| C03 |
C02 |
C01 |
C06 |
360.0 |
360.0 |
| C03 |
C02 |
C01 |
H01 |
179.9 |
179.7 |
| C01 |
C02 |
C03 |
H02 |
180.0 |
180.0 |
| C02 |
C03 |
C04 |
C07 |
180.2 |
180.1 |
| C04 |
C03 |
C02 |
H03 |
180.0 |
180.0 |
| C10 |
C05 |
C04 |
C07 |
359.8 |
359.9 |
| C05 |
C10 |
C09 |
C14 |
179.9 |
166.3 |
| C01 |
C06 |
C05 |
C04 |
0.3 |
0.0 |
| C03 |
C04 |
C05 |
C07 |
180.1 |
180.0 |
| C05 |
C04 |
C03 |
H03 |
180.1 |
180.1 |
| C05 |
C04 |
C07 |
O02 |
180.1 |
166.3 |
| C05 |
C04 |
C07 |
C08 |
0.3 |
346.3 |
| C04 |
C03 |
C02 |
H02 |
180.1 |
180.0 |
| C02 |
C03 |
C04 |
H03 |
180.0 |
180.0 |
| C05 |
C04 |
C03 |
C07 |
179.9 |
180.0 |
| C03 |
C04 |
C07 |
O02 |
359.9 |
346.3 |
| C03 |
C04 |
C07 |
C08 |
180.1 |
166.3 |
| C10 |
C09 |
C14 |
C13 |
179.9 |
180.2 |
| C10 |
C09 |
C08 |
C11 |
180.0 |
179.9 |
| C07 |
C04 |
C03 |
H03 |
0.2 |
0.1 |
| C08 |
C07 |
C04 |
O02 |
180.2 |
180.0 |
| C04 |
C07 |
C08 |
C11 |
179.8 |
193.8 |
| O03 |
C14 |
C13 |
O04 |
359.9 |
0.1 |
| C14 |
C09 |
C08 |
C11 |
0.1 |
359.9 |
| C09 |
C14 |
C13 |
O04 |
180.0 |
180.0 |
| C05 |
C10 |
C09 |
C08 |
0.0 |
346.3 |
| C09 |
C08 |
C07 |
O02 |
180.0 |
193.8 |
| C07 |
C08 |
C09 |
C11 |
180.0 |
180.0 |
| C09 |
C08 |
C11 |
C12 |
359.9 |
0.0 |
| C09 |
C08 |
C11 |
H05 |
179.9 |
180.0 |
| C04 |
C07 |
O02 |
C08 |
180.2 |
180.0 |
| O02 |
C07 |
C08 |
C11 |
0.0 |
13.8 |
| C04 |
C07 |
C08 |
O02 |
179.8 |
180.0 |
| C09 |
C08 |
C07 |
C11 |
180.0 |
180.0 |
| C07 |
C08 |
C11 |
C12 |
179.9 |
180.0 |
| C07 |
C08 |
C11 |
H05 |
359.9 |
360.0 |
| C14 |
C13 |
O04 |
H07 |
180.0 |
269.9 |
| C11 |
C08 |
C07 |
O02 |
0.0 |
13.8 |
| C12 |
C11 |
C08 |
H05 |
180.0 |
180.1 |
| C19 |
C18 |
C17 |
H10 |
180.0 |
179.8 |
| C18 |
C17 |
C16 |
H09 |
180.2 |
180.0 |
| C19 |
C |
O |
H |
191.6 |
274.8 |
| C09 |
C14 |
C13 |
C12 |
0.2 |
359.8 |
| C13 |
C12 |
C11 |
H05 |
180.1 |
180.0 |
| C13 |
C12 |
N |
S |
134.9 |
212.3 |
| C13 |
C12 |
N |
H08 |
256.4 |
32.1 |
| C08 |
C11 |
C12 |
H05 |
180.0 |
179.9 |
| C11 |
C12 |
N |
S |
315.9 |
32.3 |
| C11 |
C12 |
N |
H08 |
77.4 |
212.0 |
| O |
C |
C15 |
S |
0.2 |
0.0 |
| C15 |
C |
O |
H |
11.4 |
95.0 |
| C12 |
N |
S |
O05 |
88.3 |
45.6 |
| C12 |
N |
S |
O06 |
199.0 |
178.6 |
| S |
N |
C12 |
H08 |
238.5 |
180.3 |
| C15 |
S |
N |
H08 |
204.3 |
112.4 |
| C |
C15 |
S |
N |
100.7 |
296.7 |
| C12 |
N |
S |
H08 |
121.5 |
179.7 |
| O05 |
S |
N |
O06 |
249.3 |
227.1 |
| C |
C15 |
S |
O05 |
337.2 |
183.2 |
| N |
S |
O05 |
O06 |
117.8 |
122.9 |
| O05 |
S |
N |
H08 |
326.8 |
225.9 |
| C |
C15 |
S |
O06 |
227.2 |
50.2 |
| N |
S |
O06 |
O05 |
242.7 |
237.1 |
| O06 |
S |
N |
H08 |
77.5 |
358.9 |
| C12 |
N |
H08 |
S |
230.2 |
180.3 |
| H08 |
N |
S |
O05 |
326.8 |
225.9 |
| H08 |
N |
S |
O06 |
77.5 |
358.9 |
| H |
O |
C |
C15 |
11.4 |
95.0 |
| C02 |
C01 |
H01 |
C06 |
180.0 |
180.3 |
| H01 |
C01 |
C06 |
C05 |
179.9 |
180.3 |
| H01 |
C01 |
C06 |
H04 |
359.9 |
0.3 |
| H01 |
C01 |
C02 |
C03 |
179.9 |
179.7 |
| H01 |
C01 |
C02 |
H02 |
360.0 |
359.7 |
| H02 |
C02 |
C01 |
C06 |
180.0 |
180.0 |
| C01 |
C02 |
H02 |
C03 |
180.0 |
180.0 |
| H02 |
C02 |
C01 |
H01 |
360.0 |
359.7 |
| H02 |
C02 |
C03 |
C04 |
180.1 |
180.0 |
| H02 |
C02 |
C03 |
H03 |
0.1 |
360.0 |
| C02 |
C03 |
H03 |
C04 |
180.0 |
180.0 |
| H03 |
C03 |
C02 |
H02 |
0.1 |
360.0 |
| H03 |
C03 |
C04 |
C07 |
0.2 |
0.1 |
| C01 |
C06 |
H04 |
C05 |
180.0 |
180.0 |
| H04 |
C06 |
C01 |
H01 |
359.9 |
0.3 |
| H04 |
C06 |
C05 |
C10 |
0.1 |
0.1 |
| C08 |
C11 |
H05 |
C12 |
180.0 |
180.1 |
| H10 |
C17 |
C16 |
H09 |
0.2 |
360.0 |
| H11 |
C18 |
C19 |
H12 |
359.9 |
359.6 |
| H11 |
C18 |
C17 |
H10 |
0.1 |
0.3 |
| H12 |
C19 |
C18 |
H11 |
359.9 |
359.6 |