Atom Nomenclature for 9JF

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9JF

Atom Name (V3) Atom Name (V2)
N N1
C C1
O O1
C01 C2
C02 C3
C03 C4
C04 C5
C05 C6
C06 C7
C07 C8
C08 C9
C09 C10
C10 C11
C11 C12
C12 C13
C13 C14
C14 C15
O01 O2
O02 O3
O03 O4
O04 O5
S S1
O05 O6
O06 O7
C15 C16
C16 C17
C17 C18
C18 C19
C19 C20
H08 H1
H H2
H01 H3
H02 H4
H03 H5
H04 H6
H05 H7
H06 H8
H07 H9
H09 H10
H10 H11
H11 H12
H12 H13