Atom Nomenclature for 9HO

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9HO

Atom Name (V3) Atom Name (V2)
O2 O2
C1 C1
O1 O1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
O3 O3
H1 H1
H12C H12C
H22C H22C
H13C H13C
H23C H23C
H14C H14C
H24C H24C
H15C H15C
H25C H25C
H16C H16C
H26C H26C
H17C H17C
H27C H27C
H18C H18C
H28C H28C
H9 H9
H10 H10
H3 H3
H11 H11
H12 H12
H13 H13
H114 H114
H214 H214
H115 H115
H215 H215
H116 H116
H216 H216
H117 H117
H217 H217
H118 H118
H218 H218
H318 H318